The DOI matches its Crossref record; 62 of the 62 references it cites were found in a registry or an index.
Whole-genome landscape of pancreatic neuroendocrine tumours
Abstract
The diagnosis of pancreatic neuroendocrine tumours (PanNETs) is increasing owing to more sensitive detection methods, and this increase is creating challenges for clinical management. We performed whole-genome sequencing of 102 primary PanNETs and defined the genomic events that characterize their pathogenesis. Here we describe the mutational signatures they harbour, including a deficiency in G:C > T:A base excision repair due to inactivation of MUTYH, which encodes a DNA glycosylase. Clinically sporadic PanNETs contain a larger-than-expected proportion of germline mutations, including previously unreported mutations in the DNA repair genes MUTYH, CHEK2 and BRCA2. Together with mutations in MEN1 and VHL, these mutations occur in 17% of patients. Somatic mutations, including point mutations and gene fusions, were commonly found in genes involved in four main pathways: chromatin remodelling, DNA damage repair, activation of mTOR signalling (including previously undescribed EWSR1 gene fusions), and telomere maintenance. In addition, our gene expression analyses identified a subgroup of tumours associated with hypoxia and HIF signalling.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“substitution signatures were dominated by C>A transversions in NpCpA or NpCpT contexts (Figures 2 and 3) previously associated with inactivation of the BER gene MUTYH [11].”
From Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers (2019) · cites this paper as [11]
Citations
Cites
Signatures of mutational processes in human cancer
Initiative, A. P. C. G., Alexandrov, L. B., ICGC Breast Cancer Consortium, ICGC MMML-Seq Consortium, PedBrain, I., Nik-Zainal, S., Wedge, D. C., Aparicio, S. A. J. R., Behjati, S., Biankin, A. V., et al. (2013) · Nature · doi:10.1038/nature12477 · Cited by 9,660
Self-citationIntratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing
Gerlinger, M., Rowan, A. J., Horswell, S., Larkin, J., Endesfelder, D., Gronroos, E., Martinez, P., Matthews, N., Stewart, A., Tarpey, P., et al. (2012) · New England Journal of Medicine · doi:10.1056/nejmoa1113205 · Cited by 7,774
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
Law, C. W., Chen, Y., Shi, W., & Smyth, G. K. (2014) · Genome Biology · doi:10.1186/gb-2014-15-2-r29 · Cited by 6,155
ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking
Wilkerson, M. D., & Hayes, D. N. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq170 · Cited by 5,645
Genomic analyses identify molecular subtypes of pancreatic cancer
Bailey, P., Chang, D. K., Nones, K., Johns, A. L., Patch, A.-M., Gingras, M.-C., Miller, D. K., Christ, A. N., Bruxner, T. J. C., Quinn, M. C., et al. (2016) · Nature · doi:10.1038/nature16965 · Cited by 3,621
Self-citationMermel, C. H., Schumacher, S. E., Hill, B., Meyerson, M. M., Beroukhim, R., & Getz, G. A. (2011) · Genome biology · doi:10.1186/gb-2011-12-4-r41 · Cited by 3,520
Discovery and saturation analysis of cancer genes across 21 tumour types
Lawrence, M. S., Stojanov, P., Mermel, C. H., Robinson, J. T., Garraway, L. A., Golub, T. R., Meyerson, M., Gabriel, S. B., Lander, E. S., & Getz, G. (2014) · Nature · doi:10.1038/nature12912 · Cited by 3,096
ClinVar: public archive of interpretations of clinically relevant variants
Landrum, M. J., Lee, J. M., Benson, M., Brown, G., Chao, C., Chitipiralla, S., Gu, B., Hart, J., Hoffman, D., Hoover, J., et al. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1222 · Cited by 2,758
Whole genomes redefine the mutational landscape of pancreatic cancer
Initiative, A. P. C. G., Waddell, N., Pajic, M., Patch, A.-M., Chang, D. K., Kassahn, K. S., Bailey, P., Johns, A. L., Miller, D., Nones, K., et al. (2015) · Nature · doi:10.1038/nature14169 · Cited by 2,642
Self-citationMassive genomic rearrangement acquired in a single catastrophic event during cancer development
Stephens, P. J., Greenman, C. D., Fu, B., Yang, F., Bignell, G. R., Mudie, L. J., Pleasance, E. D., Lau, K. W., Beare, D., Stebbings, L. A., et al. (2011) · Cell · doi:10.1016/j.cell.2010.11.055 · Cited by 2,414
Flagged first, then by citations
Cited by
Sorted by citations
Items 301–400 of 1,000
New insights in diagnosis and treatment of gastroenteropancreatic neuroendocrine neoplasms
Yin, F., Wu, Z.-H., & Lai, J. (2022) · World Journal of Gastroenterology · doi:10.3748/wjg.v28.i17.1751 · Cited by 22
Spatiotemporal heterogeneity and clinical challenge of pancreatic neuroendocrine tumors
Lou, X., Qin, Y., Xu, X., Yu, X., & Ji, S. (2022) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2022.188782 · Cited by 23
Potent molecular-targeted therapies for gastro-entero-pancreatic neuroendocrine carcinoma
Ooki, A., Osumi, H., Fukuda, K., & Yamaguchi, K. (2023) · Cancer and Metastasis Reviews · doi:10.1007/s10555-023-10121-2 · Cited by 24
“…at telomeres and other genomic sites [99], and the multiple endocrine neoplasia type 1 (MEN1) interacts with DNA damage repair, chromatin remodeling, telomere alteration, and the phos-phatidylinositol-4,5-bisphosphate 3-kinase (PI3K)/mechanistic target of rapamycin kinase (mTOR) pathway [67].”
BackgroundPaller, C. J., Tukachinsky, H., Maertens, A., Decker, B. J., Sampson, J. R., Cheadle, J. P., & Antonarakis, E. S. (2024) · JCO Precision Oncology · doi:10.1200/po.23.00251 · Cited by 22
Ziv, E., Rice, S. L., Filtes, J., Yarmohammadi, H., Boas, F. E., Erinjeri, J. P., Petre, E. N., Brody, L. A., Brown, K. T., Covey, A. M., et al. (2018) · Journal of Vascular and Interventional Radiology · doi:10.1016/j.jvir.2018.05.023 · Cited by 22
Partelli, S., Muffatti, F., Rancoita, P. M. V., Andreasi, V., Balzano, G., Crippa, S., Doglioni, C., Rubini, C., Zamboni, G., & Falconi, M. (2019) · Digestive and Liver Disease · doi:10.1016/j.dld.2019.01.008 · Cited by 22
Self-citationCritical appraisal of MGMT in digestive NET treated with alkylating agents
de Mestier, L., Couvelard, A., Blažević, A., Hentic, O., de Herder, W. W., Rebours, V., Paradis, V., Ruszniewski, P. B., Hofland, L. J., & Cros, J. F. (2020) · Endocrine Related Cancer · doi:10.1530/erc-20-0227 · Cited by 22
Biomarkers to Inform Prognosis and Treatment for Unresectable or Metastatic GEP-NENs
Loree, J. M., Chan, D. L. H., Lim, J. W. Y., Stuart, H., Fidelman, N., Koea, J., Posavad, J., Cummins, M., Doucette, S., Myrehaug, S. D., et al. (2024) · JAMA Oncology · doi:10.1001/jamaoncol.2024.4330 · Cited by 21
Tacelli, M., Gentiluomo, M., Biamonte, P., Castano, J. P., Berković, M. C., Cives, M., Kapitanović, S., Marinoni, I., Marinović, S., Nikas, I. P., et al. (2025) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2025.03.005 · Cited by 23
Telomere length alterations and ATRX/DAXX loss in pituitary adenomas
Heaphy, C. M., Bi, W. L., Coy, S., Davis, C., Gallia, G. L., Santagata, S., & Rodríguez, F. J. (2020) · Modern Pathology · doi:10.1038/s41379-020-0523-2 · Cited by 23
Morphologic and Molecular Heterogeneity of Cervical Neuroendocrine Neoplasia
Ordulu, Z., Mino-Kenudson, M. A., Young, R. H., de Vijver, K. K. V., Zannoni, G. F., Félix, A., Burandt, E., Wong, A., Nardi, V., & Oliva, E. (2022) · The American Journal of Surgical Pathology · doi:10.1097/pas.0000000000001943 · Cited by 21
Kasajima, A., Pfarr, N., von Werder, A., Schwamborn, K., Gschwend, J. E., Din, N. U., Esposito, I., Weichert, W., Pavel, M., Agaimy, A., et al. (2023) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-023-03596-5 · Cited by 21
Mizuno, Y., Shimada, S., Akiyama, Y., Watanabe, S., Aida, T., Ogawa, K., Ono, H., Mitsunori, Y., Ban, D., Kudo, A., et al. (2018) · Scientific Reports · doi:10.1038/s41598-017-18323-9 · Cited by 22
Epigenetic regulation in the tumorigenesis of MEN1-associated endocrine cell types
Iyer, S., & Agarwal, S. K. (2018) · Journal of Molecular Endocrinology · doi:10.1530/jme-18-0050 · Cited by 21
Matsumoto, T., Okabe, H., Yamashita, Y., Yusa, T., Itoyama, R., Nakao, Y., Yamao, T., Umzaki, N., Tsukamoto, M., Kitano, Y., et al. (2018) · Surgery Today · doi:10.1007/s00595-018-1703-2 · Cited by 21
Molecular prognostic factors in small-intestinal neuroendocrine tumours
Samsom, K. G., van Veenendaal, L. M., Valk, G. D., Vriens, M. R., Tesselaar, M. E. T., & van den Berg, J. G. (2019) · Endocrine Connections · doi:10.1530/ec-19-0206 · Cited by 21
Men1 maintains exocrine pancreas homeostasis in response to inflammation and oncogenic stress
Wasylishen, A. R., Sun, C., Chau, G. P., Qi, Y., Su, X., Kim, M. P., Estrella, J. S., & Lozano, G. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1920017117 · Cited by 21
Han, X., Chen, W., Chen, P., Zhou, W., Rong, Y., Lv, Y., Li, J., Ji, Y., Chen, W., Lou, W., et al. (2020) · Pancreas · doi:10.1097/mpa.0000000000001535 · Cited by 21
“Recently, sporadic pNETs have been genetically characterized with whole-exome and whole-genome sequencing in relatively large cohorts of 40 to 102 patients.(16,17,27) Scarpa and colleagues(17) found that somatic mutations were most”
BackgroundLena, M. S., Cangi, M. G., Pecciarini, L., Francaviglia, I., Grassini, G., Maire, R., Partelli, S., Falconi, M., Perren, A. A., & Doglioni, C. (2020) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-020-02942-1 · Cited by 21
Self-citationModels in Pancreatic Neuroendocrine Neoplasms: Current Perspectives and Future Directions
Forsythe, S. D., Pu, T., Andrews, S. G., Madigan, J. P., & Sadowski, S. M. (2023) · Cancers · doi:10.3390/cancers15153756 · Cited by 23
Tumor suppressor functions of DAXX through histone H3.3/H3K9me3 pathway in pancreatic NETs
Ueda, H. R., Akiyama, Y., Shimada, S., Mogushi, K., Serizawa, M., Matsumura, S., Mitsunori, Y., Aihara, A., Ban, D., Ochiai, T., et al. (2018) · Endocrine Related Cancer · doi:10.1530/erc-17-0328 · Cited by 21
The Integrated Stress Response in Pancreatic Development, Tissue Homeostasis, and Cancer
Malnassy, G., Ziolkowski, L. M., Macleod, K. F., & Oakes, S. A. (2024) · Gastroenterology · doi:10.1053/j.gastro.2024.05.009 · Cited by 22
Perez, K. J., Kulke, M. H., Chittenden, A. B., Ukaegbu, C. I., Astone, K., Alexander, H., Brais, L. K., Zhang, J., Garcia, J., Esplin, E. D., et al. (2021) · JCO Precision Oncology · doi:10.1200/po.21.00047 · Cited by 20
“In the Invitae cohort, there were 120 individuals who underwent testing between 2010 and 2019 who carried a diagnosis of SI-NET.”
BackgroundInfluentialSmolková, B., Kataki, A., Earl, J., Ruz‐Caracuel, I., Cihova, M., Urbanova, M., Buociková, V., Tamargo, S., Rovīte, V., Niedra, H., et al. (2022) · Critical Reviews in Oncology/Hematology · doi:10.1016/j.critrevonc.2022.103865 · Cited by 21
Peng, S.-Q., Zhu, X., Zhao, M.-Z., Zhang, Y., Wang, A.-R., Chen, M., & Ye, Z.-Y. (2023) · Cell Death and Disease · doi:10.1038/s41419-023-05684-5 · Cited by 19
“A significant percentage of pancreatic cancers have increased PI3K/Akt cascade activation [60, 65, 66].”
BackgroundEpigenetic control of pancreatic cancer metastasis
Krauß, L., Schneider, C., Heßmann, E., Saur, D., & Schneider, G. (2023) · Cancer and Metastasis Reviews · doi:10.1007/s10555-023-10132-z · Cited by 20
“In PanNETs, nearly 40% of patients harbor MEN1 mutations and it is the most commonly mutated gene [62, 63].”
BackgroundCurrent understanding of pathogenetic mechanisms in neuroendocrine neoplasms
Modica, R., Liccardi, A., Minotta, R., Cannavale, G., Benevento, E., & Colao, A. A. L. (2023) · Expert Review of Endocrinology & Metabolism · doi:10.1080/17446651.2023.2279540 · Cited by 20
“Probably, NETs and NECs present different pathogenetic pathways and originate from different precursor cells, but because of the rarity of these malignancies a clear pathway has not been elucidated [98,99].”
BackgroundMoser, E., Ura, A., Vogel, L., Steiger, K., Mogler, C., Evert, M., Märkl, B., Scheidhauer, K., Martignoni, M. E., Frieß, H., et al. (2024) · Modern Pathology · doi:10.1016/j.modpat.2024.100595 · Cited by 20
Backman, S., Botling, J., Nord, H., Ghosal, S., Stalberg, P. L. H., Juhlin, C. C., Almlöf, J. C., Sundin, A., Zhang, L., Moens, L., et al. (2024) · The Journal of Pathology · doi:10.1002/path.6348 · Cited by 22
“…could be attributed to a mutation signature resembling SBS11, which has been attributed to treatment with alkylating agents (Figure 4A Therapy driven route to high-grade transformation in PanNET 363 showing SBS 1 (aetiology: cell division), 5 (unknown aetiology), and 8 (unknown aetiology) [8,29].”
InfluentialRole of the tumor microenvironment in digestive neuroendocrine tumors
Cuny, T., de Herder, W. W., Barlier, A., & Hofland, L. J. (2018) · Endocrine Related Cancer · doi:10.1530/erc-18-0025 · Cited by 20
Pancreatic Neuroendocrine Neoplasms: Landscape and Horizon
Tang, L. H. (2020) · Archives of Pathology & Laboratory Medicine · doi:10.5858/arpa.2019-0654-ra · Cited by 20
“In addition to the hereditary syndromes discussed earlier, which account for less than 10% of PanNETs, germline mutations in DNA damage repair genes, such as CHEK2 and MUTYH, have been identified in 17% of sporadic cases without apparent familial background.(35) In early investigations, cytogenetic and molecular genet…”
BackgroundVega, E. A., Kutlu, O. C., Alarcon, S. V., Salehi, O., Kazakova, V., Kozyreva, O. N., Chan, J. A., & Conrad, C. H. (2021) · Journal of Gastrointestinal Surgery · doi:10.1007/s11605-021-04946-x · Cited by 20
Soldevilla, B., López-López, Á., Lens‐Pardo, A., Carretero-Puche, C., López‐Gonzálvez, Á., Salvia, A. L., Gil-Calderón, B., Martínez, M. C. R., Espinosa-Olarte, P., Sarmentero, J., et al. (2021) · Cancers · doi:10.3390/cancers13112634 · Cited by 21
Context matters – Daxx and Atrx are not robust tumor suppressors in the murine endocrine pancreas
Sun, C., Estrella, J. S., Whitley, E. M., Chau, G. P., Lozano, G., & Wasylishen, A. R. (2022) · Disease Models & Mechanisms · doi:10.1242/dmm.049552 · Cited by 21
“PanNETs exhibit recurrent mutations and copy number losses in PTEN as well as TSC1/2 , leading to activation of PI3K and mTOR signaling (Scarpa et al., 2017; Jiao et al., 2011).”
Rico, K., Duan, S., Pandey, R., Chen, Y., Chakrabarti, J. T., Starr, J., Zavros, Y. L., Else, T., Katona, B. W., Metz, D. C., et al. (2021) · BMJ Open Gastroenterology · doi:10.1136/bmjgast-2021-000765 · Cited by 19
“48 Genetically engineered models (GEMMs) have provided a framework based on developmental paradigms for endocrine cells, 49 while profiling of clonal human cell lines has generated lists of genetic targets to consider as novel therapeutic targets and biomarkers.”
Prisciandaro, M., Antista, M., Raimondi, A., Corti, F., Morano, F., Centonze, G., Sabella, G., Mangogna, A., Randon, G., Pagani, F., et al. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.780716 · Cited by 20
Signaling Pathways Involved in 5-FU Drug Resistance in Cancer
Pouya, F. D., Rasmi, Y., & Nemati, M. (2022) · Cancer Investigation · doi:10.1080/07357907.2022.2055050 · Cited by 21
“Analyses performed on tumor tissues have shown that mutations in the MEN1 gene are effective up to 35% in the development of pulmonary tumors (156–158) and 37% in the pNET (159).”
BackgroundBiology-guided precision medicine in rare cancers: Lessons from sarcomas and neuroendocrine tumours
van der Graaf, W. T. A., Tesselaar, M. E. T., McVeigh, T. P., Oyen, W. J. G., & Fröhling, S. (2022) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2022.05.011 · Cited by 20
Pancreatic Neuroendocrine Tumors: Signaling Pathways and Epigenetic Regulation
Saleh, Z., Moccia, M. C., Ladd, Z., Joneja, U., Li, Y., Spitz, F. J., Hong, Y. K., & Gao, T. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25021331 · Cited by 18
“Conversely, patients with highly differentiated nonfunctional PNETs more commonly show genetic alterations, including ATRX, DAXX, and MEN1 [4–8].”
BackgroundWaldum, H. L., Öberg, K., Sørdal, Ø. F., Sandvik, A. K., Gustafsson, B. I., Mjønes, P., & Fossmark, R. (2018) · Therapeutic Advances in Gastroenterology · doi:10.1177/1756284818775054 · Cited by 19
Asano, D., Kudo, A., Akahoshi, K., Maekawa, A., Murase, Y., Ogawa, K., Ono, H., Ban, D., Tanaka, S., & Tanabe, M. (2020) · Annals of Surgery · doi:10.1097/sla.0000000000004495 · Cited by 19
“Genotypes for well-differentiated PNENs may usually include mutations of death domain-associated protein (DAXX), alpha thalassemia/mental retardation syndrome X-linked (ATRX), and menin (MEN1), while poorly differentiated PNEC may show genetic characters similar to those of pancreatic adenocarcinoma, including mutatio…”
BackgroundSampedro-Nuñez, M. A., Bouthelier, A., Serrano-Somavilla, A., Martínez‐Hernández, R., Adrados, M., Martín‐Pérez, E., de Nova, J. L. M., Cameselle‐Teijeiro, J., Blanco-Carrera, C., Cabezas-Agrícola, J. M., et al. (2020) · Cancers · doi:10.3390/cancers12102968 · Cited by 19
Obazee, O. M., Capurso, G., Tavano, F., Archibugi, L., Bonis, A. D., Greenhalf, W., Key, T. J., Pasquali, C., Milanetto, A. C., Hackert, T., et al. (2017) · Carcinogenesis · doi:10.1093/carcin/bgx150 · Cited by 18
Self-citationFeline combined diaphyseal radial and ulnar fractures
de la Puerta, B., Trayhorn, D., Moores, A. P., Langley-Hobbs, S. J., & Wallace, A. M. (2008) · Veterinary and Comparative Orthopaedics and Traumatology · doi:10.3415/vcot-08-02-0012 · Cited by 19
Uemura, J., Okano, K., Oshima, M., Suto, H., Ando, Y., Kumamoto, K., Kadota, K., Ichihara, S., Kokudo, Y., Maeba, T., et al. (2019) · Annals of Surgery · doi:10.1097/sla.0000000000003624 · Cited by 18
“Mutually exclusive somatic inactivating mutations in either the DAXX or ATRX genes have been reported to be present in as much as 33% to 43% of PNETs in case series.(13,14) Loss of function in these proteins leads to telomere dysfunction and results in impaired nonhomologous end joining, alternate lengthening of telom…”
BackgroundPareja, F. G., Vahdatinia, M., Marchiò, C., Lee, S., Paula, A. D. C., Derakhshan, F. N., da Silva, E. M., Selenica, P., Dopeso, H., Chandarlapaty, S., et al. (2020) · Journal of Clinical Pathology · doi:10.1136/jclinpath-2020-207052 · Cited by 18
Capodanno, Y., Chen, Y., Schrader, J., Tomosugi, M., Sumi, S., Yokoyama, A., Hiraoka, N., & Ohki, R. (2021) · Neoplasia · doi:10.1016/j.neo.2021.07.008 · Cited by 18
Dreijerink, K. M. A., Hackeng, W. M., Singhi, A. D., Heaphy, C. M., & Brosens, L. A. A. (2021) · The Journal of Pathology · doi:10.1002/path.5834 · Cited by 19
“These findings were later confirmed and expanded using whole-genome sequencing [11].”
BackgroundWang, X., Qiu, J.-J., Tan, C., Chen, Y., Tan, Q., Ren, S., Yang, F., Yao, W.-Q., Cao, D., Ke, N., et al. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.843376 · Cited by 18
Neuroendocrine Tumors: Genomics and Molecular Biomarkers with a Focus on Metastatic Disease
Alexander, E. S., & Ziv, E. (2023) · Cancers · doi:10.3390/cancers15082249 · Cited by 18
“They also discovered that sporadic PNETs had a larger proportion of germline mutations [24].”
BackgroundCordero-Hernandez, I., Ross, A. C., Dasari, A. N., Halperin, D. M., Chasen, B. A., & Yao, J. C. (2024) · Endocrine Related Cancer · doi:10.1530/erc-23-0203 · Cited by 18
Angerilli, V., Sabella, G., Simbolo, M., Lagano, V., Centonze, G., Gentili, M., Mangogna, A., Coppa, J. C., Munari, G., Businello, G., et al. (2024) · British Journal of Cancer · doi:10.1038/s41416-024-02705-8 · Cited by 18
Self-citationHereditary Syndromes Associated with Pancreatic and Lung Neuroendocrine Tumors
Papadopoulou‐Marketou, N., Tsoli, M., Chatzellis, E., Alexandraki, K., & Kaltsas, G. (2024) · Cancers · doi:10.3390/cancers16112075 · Cited by 22
“The vast majority of PanNETs are sporadic, but approximately 17% are associated with an inherited syndrome, the most common being Multiple Endocrine Neoplasia type 1 (MEN1), von Hippel–Lindau (VHL) syndromes, Neurofibromatosis type 1 (NF1), and Tuberous Sclerosis Complex (TSC) [2,3].”
BackgroundSARCP, a Clinical Next-Generation Sequencing Assay for the Detection of Gene Fusions in Sarcomas
Atiq, M. A., Balan, J., Blackburn, P. R., Gross, J. M., Voss, J. S., Jin, L. G., Fadra, N., Davila, J. I., Pitel, B. A., Terra, S. B. S. P., et al. (2024) · Journal of Molecular Diagnostics · doi:10.1016/j.jmoldx.2024.10.004 · Cited by 18
Komforti, M. K., Sokolovskaya, E., D’Agostino, C. A., Benayed, R., & Thomas, R. M. (2018) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-018-2344-y · Cited by 18
“described 4 tumors containing EWSR1-FLI1 fusions [36].”
Szybowska, M., Mete, Ö., Weber, E., Silver, J., & Kim, R. H. (2019) · Endocrine Pathology · doi:10.1007/s12022-019-9569-4 · Cited by 19
Challis, B., Casey, R. T., Grossman, A. B., Newell-Price, J. D. C., Newey, P. J., & Thakker, R. V. (2019) · Clinical Endocrinology · doi:10.1111/cen.14094 · Cited by 18
Translational challenges in pancreatic neuroendocrine tumor immunotherapy
Egal, É. S. A., Jacenik, D., Soares, H. P., & Beswick, E. J. (2021) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2021.188640 · Cited by 19
Tamura, A., Ogasawara, T., Fujii, Y. R., Kaneko, H., Nakayama, A., Higuchi, S., Hashimoto, N., Miyabayashi, Y., Fujimoto, M., Komai, E., et al. (2018) · The Journal of Clinical Endocrinology & Metabolism · doi:10.1210/jc.2017-02646 · Cited by 18
Young, K., Starling, N., & Sadanandam, A. (2019) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2019.09.024 · Cited by 18
Raj, N. P., Coffman, K., Le, T., Gian, R. K., Rafailov, J., Choi, Y. R., Chou, J. F., Capanu, M., Dunphy, M. P., Fox, J. J., et al. (2022) · Neuroendocrinology · doi:10.1159/000525216 · Cited by 17
Palsgrove, D. N., Manucha, V., Park, J. Y., & Bishop, J. A. (2023) · Head and Neck Pathology · doi:10.1007/s12105-023-01527-z · Cited by 17
Long-term organoid culture of a small intestinal neuroendocrine tumor
D’Agosto, S. L., Fiorini, E., Pezzini, F., Delfino, P., Simbolo, M., Vicentini, C., Andreani, S., Capelli, P., Rusev, B. C., Lawlor, R. T., et al. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.999792 · Cited by 18
Self-citationPinto, L., Pailas, A., Bondarchenko, M., Sharma, A. B., Neumann, K., Rizzo, A. J., Jeanty, C., Nicot, N., Racca, C., Graham, M. K., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkad1141 · Cited by 18
“…to generalize our findings and considering the clinical relevance of DAXX and ATRX defects in human pancreatic neuroendocrine tumors (PanNETs) ( 67 ,68 ), we next examined centromeric DSB accumulation in the panNET cell line BON-1, as well as in ATRX-KO and DAXX-KO derivatives thereof, which we…”
BackgroundXu, J., Lou, X., Wang, F., Zhang, W., Xu, X., Ye, Z., Zhuo, Q., Wang, Y., Jing, D., Fan, G., et al. (2024) · Advanced Science · doi:10.1002/advs.202308417 · Cited by 17
Zeng, Y., Zhou, Y., Hu, Y., Li, Q., Xu, Z., Lou, X., Zhang, W., Zhu, D., Xie, C., Zhou, Q., et al. (2024) · iScience · doi:10.1016/j.isci.2024.110836 · Cited by 17
“11 However,inNF-Pan-NET,thepatientswithCNValterationtendedtohavehigherTMBandworseprognosis, 10,12 suggesting thatthereisgreatheterogeneityinthepathogenesisofPan-NET.”
InfluentialMajer, A. D., Hua, X., & Katona, B. W. (2024) · Genes · doi:10.3390/genes15091231 · Cited by 17
“Loss of menin function in pNETs and cell lines is associated with dysregulation of genes involved in DNA replication, DNA recombination, DNA repair, and telomere maintenance [35,36].”
BackgroundKim, J. Y., Lee, S. H., An, S., Kim, S. J., Sung, Y., Song, K. B., Hwang, D. W., Kim, S. C., & Hong, S. (2018) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-018-2353-x · Cited by 20
Costs of Cancer Care for Elderly Patients with Neuroendocrine Tumors
Shen, C., Dasari, A. N., Gu, D., Chu, Y., Zhou, S., Xu, Y., Halperin, D. M., Fu, S., Yao, J. C., & Shih, Y. T. (2018) · PharmacoEconomics · doi:10.1007/s40273-018-0656-z · Cited by 17
Open issues on G3 neuroendocrine neoplasms: back to the future
Zatelli, M. C., Guadagno, E., Messina, E., Calzo, F. L., Faggiano, A., Colao, A., & _, _. (2018) · Endocrine Related Cancer · doi:10.1530/erc-17-0507 · Cited by 17
Schmitt, A., Feldmann, G., Zander, T., & Reinhardt, H. C. (2018) · Oncology Research and Treatment · doi:10.1159/000493401 · Cited by 18
Larouche, V., Akirov, A., Thain, E., Kim, R. H., & Ezzat, S. (2019) · Endocrinology Diabetes & Metabolism · doi:10.1002/edm2.92 · Cited by 17
Quevedo, R., Spreafico, A., Bruce, J. P., Danesh, A., Ghamrasni, S. E., Giesler, A., Hanna, Y., Have, C. L., Li, T., Yang, S. Y. C., et al. (2020) · Genome Medicine · doi:10.1186/s13073-020-00730-9 · Cited by 17
Rb and p53 Execute Distinct Roles in the Development of Pancreatic Neuroendocrine Tumors
Yamauchi, Y., Kodama, Y., Shiokawa, M., Kakiuchi, N., Marui, S., Kuwada, T., Sogabe, Y., Tomono, T., Mima, A., Morita, T., et al. (2020) · Cancer Research · doi:10.1158/0008-5472.can-19-2232 · Cited by 17
Risk factors for pancreas and lung neuroendocrine neoplasms: a case–control study
Giraldi, L., Vecchioni, A., Carioli, G., Bilotta, M., Rosa, S. L., Imperatori, A. S., Volante, M., Brizzi, M. P., Inzani, F. S., Petrone, G., et al. (2020) · Endocrine · doi:10.1007/s12020-020-02464-5 · Cited by 17
Tan, D. J., Mitra, M., Chiu, A. M., & Coller, H. A. (2020) · npj Genomic Medicine · doi:10.1038/s41525-020-00159-4 · Cited by 17
Fuentes, M. E., Lu, X., Flores, N. M., Hausmann, S., & Mazur, P. K. (2024) · Scientific Reports · doi:10.1038/s41598-024-58874-2 · Cited by 17
“Additional mutations found commonly in human PanNETs target mTOR pathway genes, including PTEN, TSC2, and PIK3CA 14,33 .”
BackgroundOrthotopic Pancreatic Tumor Mouse Models of Liver Metastasis
Zhang, G., & Du, Y. N. (2018) · Methods in molecular biology · doi:10.1007/978-1-4939-8879-2_27 · Cited by 17
Sun, B. L., Ding, H., & Sun, X. (2025) · American Journal of Clinical Pathology · doi:10.1093/ajcp/aqaf013 · Cited by 17
Ciobanu, O., Martin, S. C., & Fica, S. V. (2021) · Experimental and Therapeutic Medicine · doi:10.3892/etm.2021.10914 · Cited by 18
“In total, up to 40% of well‐differentiated NENs in the pancreas exhibit somatic mutations in the DAXX and ATRX genes (82).”
BackgroundResultMEN1 promotes ferroptosis by inhibiting mTOR-SCD1 axis in pancreatic neuroendocrine tumors
Zeng, Y., Chen, H., Ji, S., Hu, Y., Lou, X., Zhang, W., Jing, D., Fan, G., Zhang, Y., Chen, X., et al. (2022) · Acta Biochimica et Biophysica Sinica · doi:10.3724/abbs.2022162 · Cited by 17
“MEN1 mutations are the major driving factor in the occurrence and development of pNETs, because more than 40% of sporadic pNETs and all MEN1 patients possess somatic mutations of the MEN1 gene [6,30,31].”
BackgroundInfluentialRichter, S., Steenblock, C., Fischer, A., Lemm, S., Ziegler, C. G., Bechmann, N., Nölting, S., Pietzsch, J., & Ullrich, M. (2023) · Theranostics · doi:10.7150/thno.87345 · Cited by 16
“Different mechanisms were shown to result in PI3K/AKT/mTOR activation in GEP-NENs, including gene mutations in pathway components, copy number gain of AKT1 or AKT2, decreased expression of mTOR regulators PTEN and TSC2 or increased expression of tumorigenic pathway components [106, 138-140].”
BackgroundFemia, D., Prinzi, N., Anichini, A., Mortarini, R., Nichetti, F., Corti, F., Torchio, M., Peverelli, G., Pagani, F., Maurichi, A., et al. (2018) · Targeted Oncology · doi:10.1007/s11523-018-0585-y · Cited by 16
Allen, A. N., Qin, A. C. R., Raj, N. P., Wang, J., Uddin, S., Yao, Z., Tang, L. H., Meyers, P. A., Taylor, B. S., Berger, M. F., et al. (2019) · PLoS ONE · doi:10.1371/journal.pone.0217399 · Cited by 16
Starzyñska, T., Karczmarski, J., Paziewska, A., Kulecka, M., Kuśnierz, K., Żeber‐Lubecka, N., Ambrożkiewicz, F., Mikuła, M., Kos‐Kudła, B., & Ostrowski, J. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21124470 · Cited by 15
“Another whole-exome sequencing (WES) study has uncovered somatic point mutations and gene fusions in genes involved in four main pathways: chromatin remodeling, DNA damage repair, activation of mTOR signaling, and telomere maintenance [21].”
BackgroundMarinoni, I. (2021) · Gut · doi:10.1136/gutjnl-2021-324664 · Cited by 16
Boons, G., Vandamme, T., Peeters, M., Camp, G. V., & de Beeck, K. O. (2019) · Reviews in Endocrine and Metabolic Disorders · doi:10.1007/s11154-019-09508-w · Cited by 16
Ciobanu, O. A., Martin, S. C., Herlea, V., & Fica, S. V. (2022) · Cancers · doi:10.3390/cancers14184444 · Cited by 14
“Additionally, MEN1 influences all these key processes [11].”
BackgroundMethodInfluentialVenizelos, A., Sørbye, H., Elvebakken, H., Perren, A. A., Lothe, I. M. B., Couvelard, A., Hjortland, G. O., Sundlöv, A., Svensson, J. B., Garresori, H., et al. (2023) · Endocrine Related Cancer · doi:10.1530/erc-23-0057 · Cited by 15
Alors‐Pérez, E., Pedraza‐Arévalo, S., Blázquez‐Encinas, R., García‐Vioque, V., Agraz-Doblás, A., Yubero‐Serrano, E. M., Sánchez‐Frías, M., Serrano‐Blanch, R., Gálvez-Moreno, M. Á., Gracia‐Navarro, F., et al. (2023) · Molecular Therapy — Nucleic Acids · doi:10.1016/j.omtn.2023.102090 · Cited by 13
“39,40 In contrast, CELF4 expression levels were directly correlated with TSC1 and BAD , two pivotal intermediaries of PI3K/Akt and EGFR/MAPK pathways, 6,41 whose expression appeared to be enriched in relation to CELF4 expression in the GSE/DAVID analysis.”
BackgroundMolecular challenges of neuroendocrine tumors (Review)
Patel, P., & Galoian, K. A. (2017) · Oncology Letters · doi:10.3892/ol.2017.7680 · Cited by 15
“DNA damage repair, chromatin remodelling, telomere maintenance and mTOR signalling (136,137) were reported as common mutated pathways for PanNET based on genome sequencing analysis.”
Biology and Systemic Treatment of Advanced Gastroenteropancreatic Neuroendocrine Tumors
Raj, N. P., Fazio, N., & Strosberg, J. (2018) · American Society of Clinical Oncology Educational Book · doi:10.1200/edbk_200893 · Cited by 15
Hua, J., Shi, S., Xu, J., Wei, M., Zhang, Y., Liu, J., Zhang, B., & Yu, X. (2020) · Annals of Surgery · doi:10.1097/sla.0000000000003884 · Cited by 15
“However, recent large-scale studies unveiled 4 core pathways, that is, the DNA damage repair (DDR), chromatin remodeling, telomere alteration, and phosphoinositide 3-kinase/mammalian target of rapamycin signaling pathways.(24,25) DDR mechanisms are altered by both germinal and somatic mutations.”
BackgroundEvangelou, Z., Zhang, L., Tafe, L. J., Azzouz, L., Grada, Z., & Linos, K. D. (2020) · Journal of Cutaneous Pathology · doi:10.1111/cup.13788 · Cited by 15
“Even EWSR1-FLI1, which was considered pathognomomic of Ewing sarcoma, has recently been reported in pancreatic neuroendocrine tumors (PanNET).(41) More specifically Scarpa et al(41) studied the”
BackgroundHavasi, A. D., Sur, D. G., Cainap, S. S., Lungulescu, C.-V., Gavrilaș, L. I., Cainap, C. I., Vlad, C. I., & Bălăcescu, O. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23031109 · Cited by 16
“underlined the presence of MEN1 mutations in 37% of sporadic PanNET patients [85].”
BackgroundInfluentialqmotif: determination of telomere content from whole-genome sequence data
Holmes, O., Nones, K., Tang, Y., Loffler, K. A., Lee, M., Patch, A., Dagg, R. A., Lau, L. M. S., Leonard, C., Wood, S., et al. (2022) · Bioinformatics Advances · doi:10.1093/bioadv/vbac005 · Cited by 17
Self-citationMattiolo, P., Mafficini, A., Lawlor, R. T., Marchegiani, G., Malleo, G., Pea, A., Salvia, R., Piccoli, P., Sciammarella, C., Santonicco, N., et al. (2022) · Archiv für Pathologische Anatomie und Physiologie und für Klinische Medicin · doi:10.1007/s00428-022-03317-4 · Cited by 15
Self-citationEpigenetic Regulation in Gastroenteropancreatic Neuroendocrine Tumors
Crabtree, J. S. (2022) · Frontiers in Oncology · doi:10.3389/fonc.2022.901435 · Cited by 17
Neuzillet, C., de Mestier, L., Rousseau, B., Mir, O., Hebbar, M., Kocher, H. M., Ruszniewski, P. B., & Tournigand, C. (2017) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2017.07.006 · Cited by 15
“…syndromes, pNET are mainly driven by somatic mutations, which are commonly found in genes involved in chromatin remodelling, DNA damage repair, mTOR signalling, and telomere maintenance (Scarpa et al., 2017), while (ii) siNET display high level of epigenetic deregulation (Karpathakis et al., 2016).”
Anti-tumour activity of everolimus and sunitinib in neuroendocrine neoplasms
Daskalakis, K., Tsoli, M., Angelousi, A. G., Kassi, E., Alexandraki, K., Kolomodi, D., Kaltsas, G., & Koumarianou, A. A. (2019) · Endocrine Connections · doi:10.1530/ec-19-0134 · Cited by 15
Metadata
- Authors
- Initiative, A. P. C. G., Scarpa, A., Chang, D. K., Nones, K., Corbo, V., Patch, A.-M., Bailey, P., Lawlor, R. T., Johns, A. L., Miller, D. K., Mafficini, A., Rusev, B., Scardoni, M., Antonello, D., Barbi, S., Sikora, K. O., Cingarlini, S., Vicentini, C., McKay, S., Quinn, M. C. J., Bruxner, T. J. C., Christ, A. N., Harliwong, I., Idrisoglu, S., McLean, S., Nourse, C., Nourbakhsh, E., Wilson, P. J., Anderson, M. J., Fink, J. L., Newell, F., Waddell, N., Holmes, O., Kazakoff, S. H., Leonard, C., Wood, S., Xu, Q., Nagaraj, S. H., Amato, E., Dalai, I., Bersani, S., Cataldo, I., Dei Tos, A. P., Capelli, P., Davì, M. V., Landoni, L., Malpaga, A., Miotto, M., Whitehall, V. L. J., Leggett, B. A., Harris, J. L., Harris, J., Jones, M. D., Humphris, J., Chantrill, L. A., Chin, V., Nagrial, A. M., Pajic, M., Scarlett, C. J., Pinho, A., Rooman, I., Toon, C., Wu, J., Pinese, M., Cowley, M., Barbour, A., Mawson, A., Humphrey, E. S., Colvin, E. K., Chou, A., Lovell, J. A., Jamieson, N. B., Duthie, F., Gingras, M.-C., Fisher, W. E., Dagg, R. A., Lau, L. M. S., Lee, M., Pickett, H. A., Reddel, R. R., Samra, J. S., Kench, J. G., Merrett, N. D., Epari, K., Nguyen, N. Q., Zeps, N., Falconi, M., Simbolo, M., Butturini, G., Van Buren, G., Partelli, S., Fassan, M., Khanna, K. K., Gill, A. J., Wheeler, D. A., Gibbs, R. A., Musgrove, E. A., Bassi, C., Tortora, G., Pederzoli, P., Pearson, J. V., Waddell, N., Biankin, A. V., & Grimmond, S. M.
- Affiliations
- University of Verona (IT)
- Garvan Institute of Medical Research (AU)
- The University of Queensland (AU)
- Queensland University of Technology (AU)
- Glasgow Royal Infirmary (GB)
- Baylor College of Medicine (US)
- Children's Hospital at Westmead (AU)
- The University of Sydney (AU)
- Fremantle Hospital (AU)
- Royal Adelaide Hospital (AU)
- The University of Melbourne (AU)
- Corresponding author
- Scarpa, Aldo
- Biankin, Andrew V.
- Grimmond, Sean M.
- ORCID
- Scarpa, Aldo
- Chang, David K.
- Corbo, Vincenzo
- Patch, Ann-Marie
- Bailey, Peter
- Lawlor, Rita T.
- Johns, Amber L.
- Mafficini, Andrea
- Rusev, Borislav
- Antonello, Davide
- Barbi, Stefano
- Cingarlini, Sara
- Vicentini, Caterina
- Quinn, Michael C. J.
- Bruxner, Timothy J. C.
- Christ, Angelika N.
- Harliwong, Ivon
- Nourbakhsh, Ehsan
- Wilson, Peter J.
- Anderson, Matthew J.
- Fink, J. Lynn
- Newell, Felicity
- Holmes, Oliver
- Kazakoff, Stephen H.
- Leonard, Conrad
- Wood, Scott
- Nagaraj, Shivashankar Hiriyur
- Bersani, Samantha
- Cataldo, Ivana
- Davì, Maria Vittoria
- Landoni, Luca
- Malpaga, Anna
- Miotto, Marco
- Whitehall, Vicki L. J.
- Leggett, Barbara A.
- Harris, Jonathan
- Jones, Marc D.
- Chantrill, Lorraine A.
- Chin, Venessa
- Nagrial, Adnan M.
- Pajic, Marina
- Scarlett, Christopher J.
- Pinho, Andreia
- Rooman, Ilse
- Toon, Christopher
- Wu, Jianmin
- Pinese, Mark
- Cowley, Mark
- Barbour, Andrew
- Mawson, Amanda
- Colvin, Emily K.
- Chou, Angela
- Jamieson, Nigel B.
- Gingras, Marie-Claude
- Dagg, Rebecca A.
- Lau, Loretta M. S.
- Lee, Michael
- Pickett, Hilda A.
- Reddel, Roger R.
- Samra, Jaswinder S.
- Kench, James G.
- Merrett, Neil D.
- Nguyen, Nam Q.
- Zeps, Nikolajs
- Falconi, Massimo
- Simbolo, Michele
- Partelli, Stefano
- Fassan, Matteo
- Khanna, Kum Kum
- Gill, Anthony J.
- Wheeler, David A.
- Gibbs, Richard A.
- Bassi, Claudio
- Tortora, Giampaolo
- Pearson, John V.
- Waddell, Nicola
- Biankin, Andrew V.
- Grimmond, Sean M.
- Venue
- Nature
- Published
- 2017-02-15
- Volume
- 543
- Issue
- 7643
- Pages
- 65-71
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2589112207
- Cited by
- 999
- References
- 62
- Citations by year
- 2026: 65 · 2025: 101 · 2024: 103 · 2023: 110 · 2022: 126 · 2021: 108 · 2020: 131 · 2019: 89 · 2018: 103 · 2017: 52
- FWCI
- 81.15
- Type
- journal article
- Language
- en
- Update notices
- erratum (2017-09-27)
- Open access
- closed
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (acceptedVersion)
- QUT ePrints (Queensland University of Technology) (submittedVersion)
- UWA Profiles and Research Repository (UWA) (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Archivio Istituzionale della Ricerca - Università Vita-Salute San Raffaele (submittedVersion)
- NOVA (University of Newcastle Australia) (submittedVersion)
- VUBIR (Vrije Universiteit Brussel) (submittedVersion)
- Padua Research Archive (University of Padova) (submittedVersion)
- Funders
- Pancreatic Cancer UK (RIF2015_A06_Jamieson, FLF2015_04_GLASGOW)
- Wellcome Trust (103721/Z/14/Z)
- Cancer Research UK (23526, 17263, 22533)
- Academy of Medical Sciences (AMS-SGCL9-Jamieson)
- Medical Research Council (MR/N005813/1)
- Topics
- Health Sciences › Medicine › Oncology › Neuroendocrine Tumor Research Advances
- Health Sciences › Medicine › Oncology › Pancreatic and Hepatic Oncology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer Genomics and Diagnostics
- Keywords
- pancreatic neuroendocrine tumors, mutational signatures, MUTYH, germline mutations, CHEK2, BRCA2, MEN1, VHL, chromatin remodeling, DNA repair, mTOR signaling, telomere maintenance, hypoxia, carcinogenesis
- MeSH terms
- Base Sequence, Calmodulin-Binding Proteins, Chromosome Aberrations, DNA Mutational Analysis, DNA Repair, Female, Humans, Male, Pancreatic Neoplasms, Genome, Human, RNA-Binding Proteins, Telomere, Germ-Line Mutation, Carcinoma, Neuroendocrine, Genomics, RNA-Binding Protein EWS, Chromatin Assembly and Disassembly, DNA Glycosylases, DNA Copy Number Variations, TOR Serine-Threonine Kinases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review