Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells
Open accessAbstract
Susceptibility and protection against human autoimmune diseases, including type I diabetes, multiple sclerosis, and Goodpasture disease, is associated with particular human leukocyte antigen (HLA) alleles. However, the mechanisms underpinning such HLA-mediated effects on self-tolerance remain unclear. Here we investigate the molecular mechanism of Goodpasture disease, an HLA-linked autoimmune renal disorder characterized by an immunodominant CD4+ T-cell self-epitope derived from the α3 chain of type IV collagen (α3 135-145). While HLA-DR15 confers a markedly increased disease risk, the protective HLA-DR1 allele is dominantly protective in trans with HLA-DR15 (ref. 2). We show that autoreactive α3 135-145-specific T cells expand in patients with Goodpasture disease and, in α3 135-145-immunized HLA-DR15 transgenic mice, α3 135-145-specific T cells infiltrate the kidney and mice develop Goodpasture disease. HLA-DR15 and HLA-DR1 exhibit distinct peptide repertoires and binding preferences and present the α3 135-145 epitope in different binding registers. HLA-DR15-α3 135-145 tetramer+ T cells in HLA-DR15 transgenic mice exhibit a conventional T-cell phenotype (T conv) that secretes pro-inflammatory cytokines. In contrast, HLA-DR1-α3 135-145 tetramer+ T cells in HLA-DR1 and HLA-DR15/DR1 transgenic mice are predominantly CD4+Foxp3+ regulatory T cells (T reg cells) expressing tolerogenic cytokines. HLA-DR1-induced T reg cells confer resistance to disease in HLA-DR15/DR1 transgenic mice. HLA-DR15+ and HLA-DR1+ healthy human donors display altered α3 135-145-specific T-cell antigen receptor usage, HLA-DR15-α3 135-145 tetramer+ Foxp3- T conv and HLA-DR1-α3 135-145 tetramer+ Foxp3+CD25 hi CD127 lo T reg dominant phenotypes. Moreover, patients with Goodpasture disease display a clonally expanded α3 135-145-specific CD4+ T-cell repertoire. Accordingly, we provide a mechanistic basis for the dominantly protective effect of HLA in autoimmune disease, whereby HLA polymorphism shapes the relative abundance of self-epitope specific T reg cells that leads to protection or causation of autoimmunity.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Features and development of Coot
Emsley, P., Lohkamp, B., Scott, W. G., & Cowtan, K. D. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444910007493 · Cited by 27,510 · see citing works
<i>PHENIX</i> : a comprehensive Python-based system for macromolecular structure solution
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., et al. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444909052925 · Cited by 23,716 · see citing works
<i>Phaser</i> crystallographic software
McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., & Read, R. J. (2007) · Journal of Applied Crystallography · doi:10.1107/s0021889807021206 · Cited by 20,612 · see citing works
Overview of the <i>CCP</i> 4 suite and current developments
Winn, M. D., Ballard, C. C., Cowtan, K. D., Dodson, E. J., Emsley, P., Evans, P. R., Keegan, R. M., Krissinel, E. B., Leslie, A. G. W., McCoy, A., et al. (2011) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444910045749 · Cited by 12,353 · see citing works
MEME SUITE: tools for motif discovery and searching
Bailey, T. L., Boden, M., Buske, F. A., Frith, M., Grant, C. E., Clementi, L., Ren, J., Li, W. W., & Noble, W. S. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp335 · Cited by 10,648 · see citing works
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, P. D., Afonine, P. V., Bunkòczi, G., Chen, V. B., Davis, I., Echols, N., Headd, J. J., Hung, L., Kapral, G. J., Grosse‐Kunstleve, R. W., et al. (2012) · International Tables for Crystallography · doi:10.1107/97809553602060000865 · Cited by 7,334 · see citing works
2016 update of the PRIDE database and its related tools
Vizcaíno, J. A., Csordás, A., del‐Toro, N., Dianes, J. A., Griss, J., Lavidas, I., Mayer, G., Pérez‐Riverol, Y., Reisinger, F., Ternent, T., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv1145 · Cited by 3,466 · see citing works
Shilov, I. V., Seymour, S. L., Patel, A. A., Loboda, A., Tang, W. H., Keating, S. P., Hunter, C. L., Nuwaysir, L. M., & Schaeffer, D. A. (2007) · Molecular & Cellular Proteomics · doi:10.1074/mcp.t600050-mcp200 · Cited by 1,299 · see citing works
Alport's Syndrome, Goodpasture's Syndrome, and Type IV Collagen
Hudson, B. G., Tryggvason, K., Sundaramoorthy, M., & Neilson, E. G. (2003) · New England Journal of Medicine · doi:10.1056/nejmra022296 · Cited by 960 · see citing works
Self-citationImproved visualization of protein consensus sequences by iceLogo
Colaert, N., Helsens, K., Martens, L., Vandekerckhove, J. S., & Gevaert, K. (2009) · Nature Methods · doi:10.1038/nmeth1109-786 · Cited by 746 · see citing works
Immune self-reactivity triggered by drug-modified HLA-peptide repertoire
Illing, P. T., Vivian, J. P., Dudek, N. L., Kostenko, L., Chen, Z., Bharadwaj, M., Miles, J. J., Kjer‐Nielsen, L., Gras, S., Williamson, N. A., et al. (2012) · Nature · doi:10.1038/nature11147 · Cited by 694 · see citing works
Self-citationCopy number polymorphism in Fcgr3 predisposes to glomerulonephritis in rats and humans
Aitman, T. J., Dong, R., Vyse, T. J., Norsworthy, P. J., Johnson, M. D., Smith, J., Mangion, J., Roberton-Lowe, C., Marshall, A. J., Petretto, E. G., et al. (2006) · Nature · doi:10.1038/nature04489 · Cited by 666 · see citing works
IMGT®, the international ImMunoGeneTics information system®
Lefranc, M., Giudicelli, V., Ginestoux, C., Jabado-Michaloud, J., Folch, G., Bellahcene, F., Wu, Y., Gemrot, E., Brochet, X., Lane, J., et al. (2004) · Nucleic Acids Res. · doi:10.1093/nar/gkn838 · Cited by 521 · see citing works
Cowieson, N. P., Aragão, D., Clift, M., et al. (2014) · Journal of Synchrotron Radiation · doi:10.1107/s1600577514021717 · Cited by 455 · see citing works
Scally, S. W., Petersen, J., Law, S. C., Dudek, N. L., Nel, H. J., Loh, K. L., Wijeyewickrema, L. C., Eckle, S. B. G., van Heemst, J., Pike, R. N., et al. (2013) · Journal of Experimental Medicine · doi:10.1084/jem.20131241 · Cited by 429 · see citing works
Self-citationWang, G. C., Dash, P., McCullers, J. A., Doherty, P. C., & Thomas, P. G. (2012) · Science Translational Medicine · doi:10.1126/scitranslmed.3003647 · Cited by 238 · see citing works
Identification of a motif for HLA-DR1 binding peptides using M13 display libraries.
Hammer, J., Takács, B., & Sinigaglia, F. (1992) · The Journal of Experimental Medicine · doi:10.1084/jem.176.4.1007 · Cited by 222 · see citing works
Genetic Protection from the Inflammatory Disease Type 1 Diabetes in Humans and Animal Models
Todd, J. A., & Wicker, L. S. (2001) · Immunity · doi:10.1016/s1074-7613(01)00202-3 · Cited by 203 · see citing works
Functional epistasis on a common MHC haplotype associated with multiple sclerosis
Gregersen, J. W., Kranc, K. R., Ke, X., Svendsen, P., Madsen, L. S., Thomsen, A. R., Cardon, L. R., Bell, J. I., & Fugger, L. H. (2006) · Nature · doi:10.1038/nature05133 · Cited by 203 · see citing works
Self-citationPaired analysis of TCRα and TCRβ chains at the single-cell level in mice
Dash, P., McClaren, J. L., Oguin, T. H., Rothwell, W. T., Todd, B., Morris, M. Y., Becksfort, J. B., Reynolds, C., Brown, S. A., Doherty, P. C., et al. (2010) · Journal of Clinical Investigation · doi:10.1172/jci44752 · Cited by 199 · see citing works
T-cell receptor recognition of HLA-DQ2–gliadin complexes associated with celiac disease
Petersen, J., Montserrat, V., Mujico, J. R., et al. (2014) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2817 · Cited by 193 · see citing works
Self-citationNetzer, K., Leinonen, A., Boutaud, A., et al. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.16.11267 · Cited by 192 · see citing works
Ligand motifs of HLA-DRB5*0101 and DRB1*1501 molecules delineated from self-peptides.
Vogt, A. B., Kropshofer, H., Kalbacher, H., Kalbus, M., Rammensee, H., Coligan, J. E., & Martinꝉ, R. (1994) · The Journal of Immunology · doi:10.4049/jimmunol.153.4.1665 · Cited by 177 · see citing works
The HLA complex in Goodpasture's disease: A model for analyzing susceptibility to autoimmunity
Phelps, R. G., & Rees, A. J. (1999) · Kidney International · doi:10.1046/j.1523-1755.1999.00720.x · Cited by 173 · see citing works
Li, Y., Li, H., Martinꝉ, R., et al. (2000) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4198 · Cited by 138 · see citing works
Broughton, S. E., Petersen, J., Theodossis, A., Scally, S. W., Loh, K. L., Thompson, A., van Bergen, J., Kooy–Winkelaar, Y., Henderson, K. N., Beddoe, T., et al. (2012) · Immunity · doi:10.1016/j.immuni.2012.07.013 · Cited by 135 · see citing works
Self-citationIL-23, not IL-12, Directs Autoimmunity to the Goodpasture Antigen
Ooi, J. D., Phoon, R. K. S., Holdsworth, S. R., & Kitching, A. R. (2009) · Journal of the American Society of Nephrology · doi:10.1681/asn.2008080891 · Cited by 118 · see citing works
Self-citationvan der Horst-Bruinsma, I. E., VISSER, H. K. A., Hazes, J. M. W., et al. (1999) · Human Immunology · doi:10.1016/s0198-8859(98)00101-3 · Cited by 115 · see citing works
Salama, A. D., Chaudhry, A., Holthaus, K. A., et al. (2003) · Kidney International · doi:10.1046/j.1523-1755.2003.00259.x · Cited by 115 · see citing works
Cairns, L. S., Phelps, R. G., Bowie, L., et al. (2003) · Journal of the American Society of Nephrology · doi:10.1097/01.asn.0000091588.80007.0e · Cited by 76 · see citing works
Ooi, J. D., Chang, J., O’Sullivan, K. M., et al. (2013) · Journal of the American Society of Nephrology · doi:10.1681/asn.2012070705 · Cited by 74 · see citing works
Self-citationClement, C. C., Becerra, A., Yin, L., et al. (2016) · Journal of Biological Chemistry · doi:10.1074/jbc.m115.655738 · Cited by 63 · see citing works
Constitutive and Inflammatory Immunopeptidome of Pancreatic β-Cells
Dudek, N. L., Tan, C. T., Gorasia, D. G., et al. (2012) · Diabetes · doi:10.2337/db11-1333 · Cited by 60 · see citing works
Self-citationMohme, M., Hotz, C., Stevanović, S., Binder, T. M. C., Lee, J.-H., Okoniewski, M. J., EIERMANN, T. H., Sospedra, M., Rammensee, H., & Martinꝉ, R. (2013) · Brain · doi:10.1093/brain/awt108 · Cited by 51 · see citing works
Healthy Individuals Have Goodpasture Autoantigen-Reactive T Cells
Zou, J., Hannier, S., Cairns, L. S., et al. (2008) · Journal of the American Society of Nephrology · doi:10.1681/asn.2007050546 · Cited by 50 · see citing works
Schittenhelm, R. B., Dudek, N. L., Croft, N. P., et al. (2014) · Tissue Antigens · doi:10.1111/tan.12282 · Cited by 48 · see citing works
Self-citationApostolopoulos, J. J., Ooi, J. D., Odobasic, D., et al. (2005) · Journal of Immunological Methods · doi:10.1016/j.jim.2005.10.011 · Cited by 39 · see citing works
Self-citationA Systems Approach to Understand Antigen Presentation and the Immune Response
Dudek, N. L., Croft, N. P., Schittenhelm, R. B., Ramarathinam, S. H., & Purcell, A. W. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-3341-9_14 · Cited by 31 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Savage, P. A., Klawon, D. E. J., & Miller, C. H. (2020) · Annual Review of Immunology · doi:10.1146/annurev-immunol-100219-020937 · Cited by 321 · see citing works
The immunopathogenesis of narcolepsy type 1
Liblau, R. S., Latorre, D., Kornum, B. R., Dauvilliers, Y., & Mignot, E. J. (2024) · Nature Reviews Immunology · doi:10.1038/s41577-023-00902-9 · Cited by 91 · see citing works
Saggau, C., Bacher, P., Esser, D., Rasa, M., Meise, S., Mohr, N., Kohlstedt, N., Hutloff, A., Schacht, S.-S., Dargvainiene, J., et al. (2024) · Immunity · doi:10.1016/j.immuni.2024.08.005 · Cited by 79 · see citing works
Wen, X., Yang, J., James, E., Chow, I.-T., Reijonen, H., & Kwok, W. W. (2020) · Science Immunology · doi:10.1126/sciimmunol.aax8767 · Cited by 35 · see citing works
- Authors
- Ooi, J. D., Petersen, J., Tan, Y. H., Huynh, M., Willett, Z. J., Ramarathinam, S. H., Eggenhuizen, P. J., Loh, K. L., Watson, K. A., Gan, P. Y., Alikhan, M. A., Dudek, N. L., Handel, A., Hudson, B. G., Fugger, L., Power, D. A., Holt, S. G., Coates, P. T., Gregersen, J. W., Purcell, A. W., Holdsworth, S. R., La Gruta, N. L., Reid, H. H., Rossjohn, J., & Kitching, A. R.
- Affiliations
- Monash Medical Centre (AU)
- Monash University (AU)
- The University of Melbourne (AU)
- University of Georgia (US)
- Vanderbilt University Medical Center (US)
- John Radcliffe Hospital (GB)
- The Royal Melbourne Hospital (AU)
- Royal Adelaide Hospital (AU)
- Regionshospitalet Viborg (DK)
- Corresponding author
- Reid, Hugh H.
- Rossjohn, Jamie
- Kitching, A. Richard
- ORCID
- Ooi, Joshua D.
- Petersen, Jan
- Huynh, Megan
- Ramarathinam, Sri H.
- Eggenhuizen, Peter J.
- Loh, Khai L.
- Watson, Katherine A.
- Gan, Poh Y.
- Alikhan, Maliha A.
- Handel, Andreas
- Hudson, Billy G.
- Fugger, Lars
- Power, David A.
- Holt, Stephen G.
- Coates, P. Toby
- Gregersen, Jon W.
- Purcell, Anthony W.
- Reid, Hugh H.
- Rossjohn, Jamie
- Kitching, A. Richard
- Venue
- Nature
- Published
- 2017-05
- Volume
- 545
- Issue
- 7653
- Pages
- 243-247
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC5903850
- OpenAlex
- W2611932423
- Cited by
- 218
- References
- 38
- Citations by year
- 2026: 16 · 2025: 12 · 2024: 23 · 2023: 17 · 2022: 23 · 2021: 22 · 2020: 32 · 2019: 31 · 2018: 32 · 2017: 9
- FWCI
- 12.85
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- ORCA Online Research @Cardiff (Cardiff University) (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK018381)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › vaccines and immunoinformatics approaches
- Health Sciences › Medicine › Rheumatology › Systemic Lupus Erythematosus Research
- Keywords
- HLA-DR1, HLA-DR15, regulatory T cells, antigen-specific regulatory T cells, autoreactive T cells, self-tolerance, MHC class II
- MeSH terms
- Animals, Base Sequence, Female, Humans, Male, Mice, Transgenic, Models, Molecular, CD4-Positive T-Lymphocytes, Autoimmunity, HLA-DR1 Antigen, Immunodominant Epitopes, Cytokines, Anti-Glomerular Basement Membrane Disease, Collagen Type IV, T-Lymphocytes, Regulatory, Mice, Forkhead Transcription Factors, HLA-DR Serological Subtypes
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review