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The DOI matches its Crossref record; 54 of the 54 references it cites were found in a registry or an index.

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

Open access
Li, Fuguang, Fan, Guangyi, Lu, Cairui, Xiao, Guanghui, Zou, Changsong, Kohel, Russell J, Ma, Zhiying, Shang, Haihong, Ma, Xiongfeng, Wu, Jianyong, Liang, Xinming, Huang, Gai, Percy, Richard G, Liu, Kun, Yang, Weihua, Chen, Wenbin, Du, Xiongming, Shi, Chengcheng, Yuan, Youlu, Ye, Wuwei, Liu, Xin, Zhang, Xueyan, Liu, Weiqing, Wei, Hengling, Wei, Shoujun, Huang, Guodong, Zhang, Xianlong, Zhu, Shuijin, Zhang, He, Sun, Fengming, Wang, Xingfen, Liang, Jie, Wang, Jiahao, He, Qiang, Huang, Leihuan, Wang, Jun, Cui, Jinjie, Song, Guoli, Wang, Kunbo, Xu, Xun, Yu, John Z, Zhu, Yuxian, Yu, Shuxun·2015·Nature Biotechnology
DOI 10.1038/nbt.3208
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Abstract

Gossypium hirsutum has proven difficult to sequence owing to its complex allotetraploid (AtDt) genome. Here we produce a draft genome using 181-fold paired-end sequences assisted by fivefold BAC-to-BAC sequences and a high-resolution genetic map. In our assembly 88.5% of the 2,173-Mb scaffolds, which cover 89.6%∼96.7% of the AtDt genome, are anchored and oriented to 26 pseudochromosomes. Comparison of this G. hirsutum AtDt genome with the already sequenced diploid Gossypium arboreum (AA) and Gossypium raimondii (DD) genomes revealed conserved gene order. Repeated sequences account for 67.2% of the AtDt genome, and transposable elements (TEs) originating from Dt seem more active than from At. Reduction in the AtDt genome size occurred after allopolyploidization. The A or At genome may have undergone positive selection for fiber traits. Concerted evolution of different regulatory mechanisms for Cellulose synthase (CesA) and 1-Aminocyclopropane-1-carboxylic acid oxidase1 and 3 (ACO1,3) may be important for enhanced fiber production in G. hirsutum.

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Metadata

Authors
Li, F., Fan, G., Lu, C., Xiao, G., Zou, C., Kohel, R. J., Ma, Z., Shang, H., Ma, X., Wu, J., Liang, X., Huang, G., Percy, R. G., Liu, K., Yang, W., Chen, W., Du, X., Shi, C., Yuan, Y., Ye, W., Liu, X., Zhang, X., Liu, W., Wei, H., Wei, S., Huang, G., Zhang, X., Zhu, S., Zhang, H., Sun, F., Wang, X., Liang, J., Wang, J., He, Q., Huang, L., Wang, J., Cui, J., Song, G., Wang, K., Xu, X., Yu, J. Z., Zhu, Y., & Yu, S.
Venue
Nature Biotechnology
Publisher
Springer Science and Business Media LLC
Published
2015-04-20
Volume
33
Issue
5
Pages
524-530
ISSN
  • 0733-222X (ISSN-L)
  • 1087-0156
  • 1546-1696
DOI
10.1038/nbt.3208
OpenAlex
W2033611197
Cited by
1,111
References
54
FWCI
139.28
Type
journal article
Language
en
Open access
hybrid

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CoChat. (2026). Citation check: Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. https://app.cochat.ai/papers/10.1038/nbt.3208
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Li, F., Fan, G., Lu, C., Xiao, G., Zou, C., Kohel, R. J., Ma, Z., Shang, H., Ma, X., Wu, J., Liang, X., Huang, G., Percy, R. G., Liu, K., Yang, W., Chen, W., Du, X., Shi, C., Yuan, Y., . . . Yu, S. (2015). Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution. Nature Biotechnology. https://doi.org/10.1038/nbt.3208

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