NFκB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses
Open accessAbstract
Our understanding of how steroid hormones regulate physiological functions has been significantly advanced by structural biology approaches. However, progress has been hampered by misfolding of the ligand binding domains in heterologous expression systems and by conformational flexibility that interferes with crystallization. Here, we show that protein folding problems that are common to steroid hormone receptors are circumvented by mutations that stabilize well-characterized conformations of the receptor. We use this approach to present the structure of an apo steroid receptor that reveals a ligand-accessible channel allowing soaking of preformed crystals. Furthermore, crystallization of different pharmacological classes of compounds allowed us to define the structural basis of NFkappaB-selective signaling through the estrogen receptor, thus revealing a unique conformation of the receptor that allows selective suppression of inflammatory gene expression. The ability to crystallize many receptor-ligand complexes with distinct pharmacophores allows one to define structural features of signaling specificity that would not be apparent in a single structure.
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Comparing classes of structures allowed identification of common features across many structures and space groups and statistical characterization of subtle features within single-structure noise.
“Comparison of classes of structures enabled identification of common features across many structures and space groups, and allowed statistical analysis and characterization of subtle features within the noise of a single structure, as we previously used for dissecting estrogen receptor signaling (Bruning et al., 2010; Nettles et al., 2004, 2008).”
From Structural Mechanisms of Allostery and Autoinhibition in JNK Family Kinases (2012) · cites this paper as Nettles et al., 2008
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- Authors
- Nettles, K. W., Bruning, J. B., Gil, G., Nowak, J., Sharma, S. K., Hahm, J. B., Kulp, K., Hochberg, R. B., Zhou, H., Katzenellenbogen, J. A., Katzenellenbogen, B. S., Kim, Y., Joachimiak, A., & Greene, G. L.
- Affiliations
- Scripps Research Institute (US)
- University of Chicago (US)
- Lawrence Livermore National Laboratory (US)
- Yale Cancer Center (US)
- University of Illinois Urbana-Champaign (US)
- Argonne National Laboratory (US)
- Corresponding author
- Nettles, Kendall W
- Greene, Geoffrey L
- ORCID
- Venue
- Nature Chemical Biology
- Published
- 2008-03-16
- Volume
- 4
- Issue
- 4
- Pages
- 241-247
- ISSN
- 1552-4450 (ISSN-L)
- 1552-4469
- PMC
- PMC2659626
- OpenAlex
- W2035504218
- Cited by
- 159
- References
- 34
- Citations by year
- 2026: 4 · 2025: 9 · 2024: 7 · 2023: 4 · 2022: 8 · 2021: 10 · 2020: 4 · 2019: 7 · 2018: 14 · 2017: 9 · 2016: 14 · 2015: 9 · 2014: 15 · 2013: 5 · 2012: 14
- FWCI
- 5.33
- Type
- journal article
- Language
- en
- Update notices
- erratum (2008-06-01)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Chemical Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Funders
- National Heart, Lung, and Blood Institute (R01 HL61432, R01HL061432)
- National Cancer Institute (R01CA089489, 5R01 CA 18119, R01CA037799, R33CA132022, 5R01 CA89489, R01CA018119, R01 CA37799)
- National Institute of Diabetes and Digestive and Kidney Diseases (R37DK015556, 5R37DK-15556, R01DK015556, R01DK077085)
- National Institute of Neurological Disorders and Stroke (R21NS056998)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Estrogen and related hormone effects
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Keywords
- estrogen receptor, NF-κB signaling, steroid hormone receptors, ligand-binding domain, inflammatory gene expression, pharmacophore
- MeSH terms
- Bridged Bicyclo Compounds, Binding Sites, Humans, Hydrogen Bonding, Ligands, Models, Molecular, Mutation, Protein Conformation, Pyrazoles, Pyrimidines, Receptors, Estrogen, Sensitivity and Specificity, Structure-Activity Relationship, Signal Transduction, NF-kappa B, Protein Structure, Secondary, Protein Folding, Crystallography, X-Ray
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