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Rotational manipulation of single cells and organisms using acoustic waves
Open accessAbstract
The precise rotational manipulation of single cells or organisms is invaluable to many applications in biology, chemistry, physics and medicine. In this article, we describe an acoustic-based, on-chip manipulation method that can rotate single microparticles, cells and organisms. To achieve this, we trapped microbubbles within predefined sidewall microcavities inside a microchannel. In an acoustic field, trapped microbubbles were driven into oscillatory motion generating steady microvortices which were utilized to precisely rotate colloids, cells and entire organisms (that is, C. elegans). We have tested the capabilities of our method by analysing reproductive system pathologies and nervous system morphology in C. elegans. Using our device, we revealed the underlying abnormal cell fusion causing defective vulval morphology in mutant worms. Our acoustofluidic rotational manipulation (ARM) technique is an easy-to-use, compact, and biocompatible method, permitting rotation regardless of optical, magnetic or electrical properties of the sample under investigation.
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Citations
Cites
THE GENETICS OF CAENORHABDITIS ELEGANS
Brenner, S. (1974) · Genetics · doi:10.1093/genetics/77.1.71 · Cited by 15,081
A revolution in optical manipulation
Grier, D. G. (2003) · Nature · doi:10.1038/nature01935 · Cited by 5,123
Functional genomic analysis of C. elegans chromosome I by systematic RNA interference
Fraser, A. G., Kamath, R. S., Zipperlen, P., Martinez-Campos, M., Sohrmann, M., & Ahringer, J. (2000) · Nature · doi:10.1038/35042517 · Cited by 1,765
Miniaturized integration of a fluorescence microscope
Ghosh, K. K., Burns, L. D., Cocker, E. D., Nimmerjahn, A., Ziv, Y., Gamal, A. E., & Schnitzer, M. J. (2011) · Nature Methods · doi:10.1038/nmeth.1694 · Cited by 1,120
Finding function in novel targets: C. elegans as a model organism
Kaletta, T., & Hengartner, M. O. (2006) · Nature Reviews Drug Discovery · doi:10.1038/nrd2031 · Cited by 1,093
Optical alignment and spinning of laser-trapped microscopic particles
Friese, M. E. J., Nieminen, T. A., Heckenberg, N. R., & Rubinsztein-Dunlop, H. (1998) · Nature · doi:10.1038/28566 · Cited by 1,020
Holographic acoustic elements for manipulation of levitated objects
Marzo, A., Seah, S. A., Drinkwater, B. W., Sahoo, D. R., Long, B., & Subramanian, S. (2015) · Nature Communications · doi:10.1038/ncomms9661 · Cited by 943
On-chip manipulation of single microparticles, cells, and organisms using surface acoustic waves
Ding, X., Lin, S.-C. S., Kiraly, B., Yue, H., Li, S., Chiang, I.-K., Shi, J., Benkovic, S. J., & Huang, T. J. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1209288109 · Cited by 912
Self-citationControlled vesicle deformation and lysis by single oscillating bubbles
Marmottant, P., & Hilgenfeldt, S. (2003) · Nature · doi:10.1038/nature01613 · Cited by 853
Functional regeneration after laser axotomy
Yanik, M. F., Cinar, H., Cinar, H. N., Chisholm, A. D., Jin, Y., & Ben-Yakar, A. (2004) · Nature · doi:10.1038/432822a · Cited by 598
A millisecond micromixer via single-bubble-based acoustic streaming
Ahmed, D., Mao, X., Shi, J., Juluri, B. K., & Huang, T. J. (2009) · Lab on a Chip · doi:10.1039/b903687c · Cited by 415
Self-citationLight-driven nanoscale plasmonic motors
Liu, M., Zentgraf, T., Liu, Y., Bartal, G., & Zhang, X. (2010) · Nature Nanotechnology · doi:10.1038/nnano.2010.128 · Cited by 388
Recent Advances in Magnetic Tweezers
De Vlaminck, I., & Dekker, C. (2012) · Annual Review of Biophysics · doi:10.1146/annurev-biophys-122311-100544 · Cited by 374
Automated on-chip rapid microscopy, phenotyping and sorting of C. elegans
Chung, K., Crane, M. M., & Lu, H. (2008) · Nature Methods · doi:10.1038/nmeth.1227 · Cited by 352
Hefner, B. T., & Marston, P. L. (1999) · The Journal of the Acoustical Society of America · doi:10.1121/1.428184 · Cited by 348
High-throughput in vivo vertebrate screening
Pardo-Martin, C., Chang, T.-Y., Koo, B. K., Gilleland, C. L., Wasserman, S. C., & Yanik, M. F. (2010) · Nature Methods · doi:10.1038/nmeth.1481 · Cited by 325
Rohde, C. B., Zeng, F., Gonzalez-Rubio, R., Angel, M., & Yanik, M. F. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706513104 · Cited by 295
Epidermal growth factor signaling induces behavioral quiescence in Caenorhabditis elegans
Van Buskirk, C., & Sternberg, P. W. (2007) · Nature Neuroscience · doi:10.1038/nn1981 · Cited by 238
Selectively manipulable acoustic-powered microswimmers
Ahmed, D., Lu, M., Nourhani, A., Lammert, P. E., Stratton, Z., Muddana, H. S., Crespi, V. H., & Huang, T. J. (2015) · Scientific Reports · doi:10.1038/srep09744 · Cited by 235
Self-citationOscillating bubbles: a versatile tool for lab on a chip applications
Hashmi, A., Yu, G., Reilly-Collette, M., Heiman, G., & Xu, J. (2012) · Lab on a Chip · doi:10.1039/c2lc40424a · Cited by 211
Femtosecond laser nanoaxotomy lab-on-a-chip for in vivo nerve regeneration studies
Guo, S. X., Bourgeois, F., Chokshi, T., Durr, N. J., Hilliard, M. A., Chronis, N., & Ben-Yakar, A. (2008) · Nature Methods · doi:10.1038/nmeth.1203 · Cited by 202
Controlled permeation of cell membrane by single bubble acoustic cavitation
Zhou, Y., Yang, K., Cui, J., Ye, J. Y., & Deng, C. X. (2012) · Journal of Controlled Release · doi:10.1016/j.jconrel.2011.09.068 · Cited by 194
Hong, Z., Zhang, J., & Drinkwater, B. W. (2015) · Physical Review Letters · doi:10.1103/physrevlett.114.214301 · Cited by 179
Investigation of acoustic streaming patterns around oscillating sharp edges
Nama, N., Huang, P.-H., Huang, T. J., & Costanzo, F. (2014) · Lab Chip · doi:10.1039/c4lc00191e · Cited by 179
Self-citationOptical Tweezers Cause Physiological Damage to Escherichia coli and Listeria Bacteria
Rasmussen, M. B., Oddershede, L. B., & Siegumfeldt, H. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.02265-07 · Cited by 173
Ainslie, M. A., & Leighton, T. G. (2011) · The Journal of the Acoustical Society of America · doi:10.1121/1.3628321 · Cited by 164
Formation of the vulva in Caenorhabditis elegans: a paradigm for organogenesis
Sharma-Kishore, R., White, J. G., Southgate, E., & Podbilewicz, B. (1999) · Development · doi:10.1242/dev.126.4.691 · Cited by 155
Ben-Yakar, A., Chronis, N., & Lu, H. (2009) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2009.10.010 · Cited by 138
Single-cell level co-culture platform for intercellular communication
Hong, S., Pan, Q., & Lee, L. P. (2012) · Integrative Biology · doi:10.1039/c2ib00166g · Cited by 124
Optoacoustic generation of a helicoidal ultrasonic beam
Gspan, S., Meyer, A., Bernet, S., & Ritsch‐Marte, M. (2004) · The Journal of the Acoustical Society of America · doi:10.1121/1.1643367 · Cited by 107
Tunable, pulsatile chemical gradient generation via acoustically driven oscillating bubbles
Ahmed, D., Chan, C. Y., Lin, S. S., Muddana, H. S., Nama, N., Benkovic, S. J., & Huang, T. J. (2012) · Lab on a Chip · doi:10.1039/c2lc40923b · Cited by 104
Self-citationAutonomous screening of C. elegans identifies genes implicated in synaptogenesis
Crane, M. M., Stirman, J. N., Ou, C.-Y., Kurshan, P. T., Rehg, J. M., Shen, K., & Lu, H. (2012) · Nature Methods · doi:10.1038/nmeth.2141 · Cited by 100
Hwang, B. J., & Sternberg, P. W. (2003) · Development · doi:10.1242/dev.00924 · Cited by 99
Portable, Battery-Operated, Low-Cost, Bright Field and Fluorescence Microscope
Miller, A. R., Davis, G. L., Oden, Z. M., Razavi, M. R., Fateh, A., Ghazanfari, M., Abdolrahimi, F., Dizaji, S. P., Sakhaie, F., Olsen, R. J., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011890 · Cited by 97
Axonal regeneration proceeds through specific axonal fusion in transected C. elegans neurons
Neumann, B., Nguyen, K. C. Q., Hall, D. H., Ben‐Yakar, A., & Hilliard, M. A. (2011) · Developmental Dynamics · doi:10.1002/dvdy.22606 · Cited by 96
High-throughput hyperdimensional vertebrate phenotyping
Pardo-Martín, C., Allalou, A., Medina, J., Eimon, P. M., Wählby, C., & Yanik, M. F. (2013) · Nature Communications · doi:10.1038/ncomms2475 · Cited by 93
Coşkun, A., Şencan, I., Su, T.-W., & Ozcan, A. (2011) · PLoS ONE · doi:10.1371/journal.pone.0015955 · Cited by 87
Mohanty, S. K., Uppal, A., & Gupta, P. K. (2004) · Biotechnology Letters · doi:10.1023/b:bile.0000030041.94322.71 · Cited by 86
Shear sensitivity of animal cells from a culture-medium perspective
van der Pol, L., & TRAMPER, J. (1998) · Trends in biotechnology · doi:10.1016/s0167-7799(98)01209-8 · Cited by 85
Hefner, B. T., & Marston, P. L. (1999) · The Journal of the Acoustical Society of America · doi:10.1121/1.427997 · Cited by 84
SEPARATION OF H E L A CELLS BY COLLOIDAL SILICA DENSITY GRADIENT CENTRIFUGATION
WOLFF, D. A., & Pertoft, H. (1972) · The Journal of Cell Biology · doi:10.1083/jcb.55.3.579 · Cited by 80
Automated single-cell motility analysis on a chip using lensfree microscopy
Pushkarsky, I., Liu, Y., Weaver, W. M., Su, T., Mudanyali, O., Özcan, A., & Carlo, D. D. (2014) · Scientific Reports · doi:10.1038/srep04717 · Cited by 79
Cáceres, I. D. C., Valmas, N., Hilliard, M. A., & Lu, H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0035037 · Cited by 77
Zahn, T. R., MacMorris, M., Dong, W., Day, R. W., & Hutton, J. C. (2000) · The Journal of Comparative Neurology · doi:10.1002/1096-9861(20000101)429:1<127::aid-cne10>3.0.co;2-h · Cited by 76
Acoustic Devices for Particle and Cell Manipulation and Sensing
Qiu, Y., Wang, H., Demore, C. E. M., Hughes, D., Glynne‐Jones, P., Gebhardt, W., Bolhovitins, A., Poltarjonoks, R., Weijer, K., Schonecker, A. J., et al. (2014) · Sensors · doi:10.3390/s140814806 · Cited by 59
Self-Rotation of Cells in an Irrotational AC E-Field in an Opto-Electrokinetics Chip
Chau, L.-H., Liang, W., Cheung, F. W. K., Liu, W. K., Li, W. J., Chen, S., & Lee, G. (2013) · PLoS ONE · doi:10.1371/journal.pone.0051577 · Cited by 57
The Caenorhabditis elegans Nuclear Receptor Gene nhr-25 Regulates Epidermal Cell Development
Chen, Z., Eastburn, D. J., & Han, M. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.17.7345-7358.2004 · Cited by 54
Letters: optically transparent piezoelectric transducer for ultrasonic particle manipulation
Brodie, G., Qiu, Y., Cochran, S., Spalding, G. C., & MacDonald, M. P. (2014) · IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control · doi:10.1109/tuffc.2014.2923 · Cited by 53
Acoustofluidic Chemical Waveform Generator and Switch
Ahmed, D., Muddana, H. S., Lu, M., French, J. B., Özçelik, A., Ye, F., Butler, P. J., Benkovic, S. J., Manz, A., & Huang, T. J. (2014) · Analytical Chemistry · doi:10.1021/ac5033676 · Cited by 53
Self-citationElectronic properties of nanoentities revealed by electrically driven rotation
Fan, D., Zhu, F. Q., Xu, X., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1200342109 · Cited by 44
Elbez, R., McNaughton, B. H., Patel, L. R., Pienta, K. J., & Kopelman, R. (2011) · PLoS ONE · doi:10.1371/journal.pone.0028475 · Cited by 44
Microbubble array for on-chip worm processing
Xu, Y., Hashmi, A. J., Yu, G., Lu, X., Kwon, H.-J., Chen, X., & Xu, J. (2013) · Applied Physics Letters · doi:10.1063/1.4788677 · Cited by 38
Reina, A., Subramaniam, A. B., Laromaine, A., Samuel, A. D. T., & Whitesides, G. M. (2013) · PLoS ONE · doi:10.1371/journal.pone.0069651 · Cited by 27
An Automated Microfluidic Multiplexer for Fast Delivery of C. elegans Populations from Multiwells
Ghorashian, N., Gökçe, S. K., Guo, S. X., Everett, W. N., & Ben‐Yakar, A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0074480 · Cited by 20
ASK1 promotes the contact hypersensitivity response through IL-17 production
Mizukami, J., Sato, T. K., Camps, M., Ji, H., Rueckle, T., Swinnen, D., Tsuboi, R., Takeda, K., & Ichijo, H. (2014) · Scientific Reports · doi:10.1038/srep04714 · Cited by 16
Rotation of a single cell in a discontinuous rotating electric field
Pilwat, G., & Zimmermann, U. (1983) · Journal of Electroanalytical Chemistry · doi:10.1016/s0022-0728(83)80465-3 · Cited by 8
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Self-citation
Metadata
- Authors
- Ahmed, D., Ozcelik, A., Bojanala, N., Nama, N., Upadhyay, A., Chen, Y., Hanna-Rose, W., & Huang, T. J.
- Venue
- Nature Communications
- Published
- 2016-03-23
- Volume
- 7
- Issue
- 1
- Pages
- 11085-11085
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2303738501
- Cited by
- 508
- References
- 56
- FWCI
- 21.28
- Type
- journal article
- Language
- en
- Open access
- gold
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