Single-cell dynamics of the chromosome replication and cell division cycles in mycobacteria
Open accessAbstract
During the bacterial cell cycle, chromosome replication and cell division must be coordinated with overall cell growth in order to maintain the correct ploidy and cell size. The spatial and temporal coordination of these processes in mycobacteria is not understood. Here we use microfluidics and time-lapse fluorescence microscopy to measure the dynamics of cell growth, division and chromosome replication in single cells of Mycobacterium smegmatis. We find that single-cell growth is size-dependent (large cells grow faster than small cells), which implicates a size-control mechanism in cell-size homoeostasis. Asymmetric division of mother cells gives rise to unequally sized sibling cells that grow at different velocities but show no differential sensitivity to antibiotics. Individual cells are restricted to one round of chromosome replication per cell division cycle, although replication usually initiates in the mother cell before cytokinesis and terminates in the daughter cells after cytokinesis. These studies reveal important differences between cell cycle organization in mycobacteria compared with better-studied model organisms.
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Mycobacteria divide asymmetrically by a fast, mechanical-snapping mechanism.
“Mycobacteria divide asymmetrically by a fast, mechanical-snapping mechanism (107, 118–121).”
From Mycobacterium smegmatis: The Vanguard of Mycobacterial Research (2023) · cites this paper as [119]
The Discussion reports that mycobacteria usually divide asymmetrically, producing siblings of unequal size. The section on cytokinesis reports a substantial delay between cytokinesis and physical separation, but does not describe separation as a fast, mechanical-snapping mechanism. That mechanism is not supported by this source. (LLM, conf=0.86)
Experimental — accuracy not yet measuredMycobacteria lack MreB and deposit new cell wall material asymmetrically at the tips of the bacilli.
“Mycobacteria lack MreB and deposit new cell wall material asymmetrically at the tips of the bacilli26,27.”
From The mycobacterial cell envelope — a moving target (2020) · cites this paper as [27]
The Abstract says mycobacteria insert new cell-wall material at their poles, supporting deposition at the tips. But the Discussion reports that old and new poles elongate at the same velocity after cell separation, rather than showing asymmetric deposition between tips. The passages do not establish that mycobacteria lack MreB. (LLM, conf=0.87)
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Cites
Chromosome replication and the division cycle of Escherichia coli
Cooper, S., & Helmstetter, C. E. (1968) · Journal of Molecular Biology · doi:10.1016/0022-2836(68)90425-7 · Cited by 1,199 · see citing works
Control of Cell Morphogenesis in Bacteria
Daniel, R. A., & Errington, J. (2003) · Cell · doi:10.1016/s0092-8674(03)00421-5 · Cited by 740 · see citing works
How Cells Coordinate Growth and Division
Jorgensen, P., & Tyers, M. (2004) · Current Biology · doi:10.1016/j.cub.2004.11.027 · Cited by 559 · see citing works
Dynamic Persistence of Antibiotic-Stressed Mycobacteria
Wakamoto, Y., Dhar, N., Chait, R., Schneider, K., Signorino‐Gelo, F., Leibler, S., & McKinney, J. D. (2013) · Science · doi:10.1126/science.1229858 · Cited by 536 · see citing works
Self-citationParish, T., & Stoker, N. G. (2000) · Microbiology · doi:10.1099/00221287-146-8-1969 · Cited by 512 · see citing works
Asymmetry and Aging of Mycobacterial Cells Lead to Variable Growth and Antibiotic Susceptibility
Aldridge, B. B., Fernandez-Suarez, M., Heller, D., Ambravaneswaran, V., Irimia, D., Toner, M., & Fortune, S. M. (2012) · Science · doi:10.1126/science.1216166 · Cited by 454 · see citing works
Optical measurement of cycle-dependent cell growth
Mir, M., Wang, Z., Shen, Z. Z., Bednarz, M., Bashir, R., Golding, I., Prasanth, S. G., & Popescu, G. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1100506108 · Cited by 411 · see citing works
Bacterial Growth and Cell Division: a Mycobacterial Perspective
Hett, E. C., & Rubin, E. J. (2008) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00028-07 · Cited by 408 · see citing works
Cell Growth and Size Homeostasis in Proliferating Animal Cells
Tzur, A., Kafri, R., LeBleu, V. S., Lahav, G., & Kirschner, M. W. (2009) · Science · doi:10.1126/science.1174294 · Cited by 403 · see citing works
Using buoyant mass to measure the growth of single cells
Godin, M., Delgado, F. F., Son, S., Grover, W. H., Bryan, A. K., Tzur, A., Jorgensen, P., Payer, K., Grossman, A. D., Kirschner, M. W., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1452 · Cited by 394 · see citing works
Timing of initiation of chromosome replication in individual Escherichia coli cells.
Skarstad, K., Boye, E., & Steen, H. B. (1986) · The EMBO Journal · doi:10.1002/j.1460-2075.1986.tb04415.x · Cited by 380 · see citing works
Metabolism, cell growth and the bacterial cell cycle
Wang, J. D., & Levin, P. A. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2202 · Cited by 352 · see citing works
Bates, D. B., & Kleckner, N. E. (2005) · Cell · doi:10.1016/j.cell.2005.04.013 · Cited by 323 · see citing works
Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC
Katayama, T., Ozaki, S., Keyamura, K., & Fujimitsu, K. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2314 · Cited by 303 · see citing works
Photobleaching GFP reveals protein dynamics inside live cells
White, J. (1999) · Trends in Cell Biology · doi:10.1016/s0962-8924(98)01433-0 · Cited by 266 · see citing works
Kang, C.-M., Nyayapathy, S., Lee, J.-Y., Suh, J.-W., & Husson, R. N. (2008) · Microbiology · doi:10.1099/mic.0.2007/014076-0 · Cited by 264 · see citing works
Margolin, W. (2009) · Current Biology · doi:10.1016/j.cub.2009.06.033 · Cited by 262 · see citing works
Chien, A., Hill, N. S., & Levin, P. A. (2012) · Current Biology · doi:10.1016/j.cub.2012.02.032 · Cited by 259 · see citing works
Pavelka, M. S., & Jacobs, W. R. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.16.4780-4789.1999 · Cited by 177 · see citing works
Thanky, N. R., Young, D. B., & Robertson, B. D. (2007) · Tuberculosis · doi:10.1016/j.tube.2006.10.004 · Cited by 150 · see citing works
Antigen 84, an Effector of Pleiomorphism in Mycobacterium smegmatis
Nguyen, L. D., Scherr, N., Gatfield, J., Walburger, A., Pieters, J., & Thompson, C. (2007) · Journal of Bacteriology · doi:10.1128/jb.00726-07 · Cited by 121 · see citing works
Organization of sister origins and replisomes during multifork DNA replication in Escherichia coli
Fossum, S., Crooke, E., & Skarstad, K. (2007) · The EMBO Journal · doi:10.1038/sj.emboj.7601871 · Cited by 118 · see citing works
Interference of <i>Mycobacterium tuberculosis</i> cell division by Rv2719c, a cell wall hydrolase
Chauhan, A., Lofton, H., Maloney, E., Moore, J., Fol, M., Madiraju, M. V. V. S., & Rajagopalan, M. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05333.x · Cited by 116 · see citing works
Regulation of Polar Peptidoglycan Biosynthesis by Wag31 Phosphorylation in Mycobacteria
Jani, C., Eoh, H., Lee, J. J., Hamasha, K., Sahana, M. B., Han, J.-S., Nyayapathy, S., Lee, J.-Y., Suh, J., Lee, S.-H., et al. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-327 · Cited by 111 · see citing works
Cell Division Site Placement and Asymmetric Growth in Mycobacteria
Joyce, G., Williams, K. J., Robb, M. L., Noens, E. E. E., Tizzano, B., Shahrezaei, V., & Robertson, B. D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0044582 · Cited by 103 · see citing works
Cooper, S. (2006) · Theoretical Biology and Medical Modelling · doi:10.1186/1742-4682-3-10 · Cited by 100 · see citing works
Ginda, K., Bezulska‐Ditkowska, M., Ziolkiewicz, M., Dziadek, J., Zakrzewska‐Czerwińska, J., & Jakimowicz, D. (2013) · Molecular Microbiology · doi:10.1111/mmi.12146 · Cited by 87 · see citing works
Sloppy size control of the cell division cycle
Tyson, J. J., & Diekmann, O. (1986) · Journal of Theoretical Biology · doi:10.1016/s0022-5193(86)80162-x · Cited by 84 · see citing works
Judd, E. M., Ryan, K. R., Moerner, W. E., Shapiro, L., & McAdams, H. H. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1433105100 · Cited by 83 · see citing works
Do growth and cell division rates determine cell size in multicellular organisms?
Coelho, C. M. A., & Leevers, S. J. (2000) · Journal of Cell Science · doi:10.1242/jcs.113.17.2927 · Cited by 81 · see citing works
Asymmetric growth and division in M ycobacterium spp.: compensatory mechanisms for non‐medial septa
Singh, B., Nitharwal, R. G., Ramesh, M., Pettersson, B. M. F., Kirsebom, L. A., & Dasgupta, S. (2013) · Molecular Microbiology · doi:10.1111/mmi.12169 · Cited by 72 · see citing works
Cell polarity and the control of apical growth in Streptomyces.
Flärdh, K. (2010) · Current Opinion in Microbiology · doi:10.1016/j.mib.2010.10.002 · Cited by 71 · see citing works
Regulation of chromosomal replication in Caulobacter crescentus
Collier, J. (2011) · Plasmid · doi:10.1016/j.plasmid.2011.12.007 · Cited by 60 · see citing works
Synchronization of Chromosome Dynamics and Cell Division in BacteriaPreprint
Thanbichler, M. R. (2009) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a000331 · Cited by 60 · see citing works
Deoxyribonucleic acid replication time in Mycobacterium tuberculosis H37 Rv
Hiriyanna, K. T., & Ramakrishnan, T. V. (1986) · Archives of Microbiology · doi:10.1007/bf00414718 · Cited by 58 · see citing works
Su’etsugu, M., & Errington, J. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.02.024 · Cited by 53 · see citing works
Regulation of Interactions with Sliding Clamps During DNA Replication and Repair
de Saro, F. J. L. (2009) · Current Genomics · doi:10.2174/138920209788185234 · Cited by 45 · see citing works
Global asymptotic stability of the size distribution in probabilistic models of the cell cycle
Tyson, J. J., & Hannsgen, K. B. (1985) · Journal of Mathematical Biology · doi:10.1007/bf00276546 · Cited by 39 · see citing works
Single cell studies of the cell cycle and some models
Mitchison, J. M. (2005) · Theoretical Biology and Medical Modelling · doi:10.1186/1742-4682-2-4 · Cited by 34 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
A Constant Size Extension Drives Bacterial Cell Size Homeostasis
Campos, M., Surovtsev, I. V., Kato, S., Paintdakhi, A., Beltran, B. G., Ebmeier, S., & Jacobs, C. (2014) · Cell · doi:10.1016/j.cell.2014.11.022 · Cited by 472 · see citing works
Biofilms: Understanding the structure and contribution towards bacterial resistance in antibiotics
Shree, P., Singh, C. K., Sodhi, K. K., Surya, J. N., & Singh, D. K. (2023) · Medicine in Microecology · doi:10.1016/j.medmic.2023.100084 · Cited by 437 · see citing works
The mycobacterial cell envelope — a moving target
Dulberger, C. L., Rubin, E. J., & Boutte, C. C. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-019-0273-7 · Cited by 365 · see citing works
Manina, G., Dhar, N., & McKinney, J. D. (2014) · Cell Host & Microbe · doi:10.1016/j.chom.2014.11.016 · Cited by 296 · see citing works
Self-citationStaying in Shape: the Impact of Cell Shape on Bacterial Survival in Diverse Environments
Yang, D. C., Blair, K. M., & Salama, N. R. (2016) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00031-15 · Cited by 283 · see citing works
How sisters grow apart: mycobacterial growth and division
Kieser, K. J., & Rubin, E. J. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3299 · Cited by 255 · see citing works
Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria
Si, F., Treut, G. L., Sauls, J. T., Vadia, S., Levin, P. A., & Jun, S. (2019) · Current Biology · doi:10.1016/j.cub.2019.04.062 · Cited by 250 · see citing works
Deletion of a mycobacterial divisome factor collapses single-cell phenotypic heterogeneity
Rego, E. H., Audette, R. E., & Rubin, E. J. (2017) · Nature · doi:10.1038/nature22361 · Cited by 186 · see citing works
Subcellular Organization: A Critical Feature of Bacterial Cell Replication
Surovtsev, I. V., & Jacobs, C. (2018) · Cell · doi:10.1016/j.cell.2018.01.014 · Cited by 187 · see citing works
Jun, S., Si, F., Pugatch, R., & Scott, M. (2018) · Reports on Progress in Physics · doi:10.1088/1361-6633/aaa628 · Cited by 186 · see citing works
Drug resistant tuberculosis: Implications for transmission, diagnosis, and disease management
Liebenberg, D., Gordhan, B. G., & Kana, B. D. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.943545 · Cited by 210 · see citing works
Subpolar addition of new cell wall is directed by DivIVA in mycobacteria
Meniche, X., Otten, R., Siegrist, M. S., Baer, C. E., Murphy, K. C., Bertozzi, C. R., & Sassetti, C. M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1402158111 · Cited by 175 · see citing works
Sizing up the bacterial cell cycle
Willis, L., & Huang, K. C. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.79 · Cited by 170 · see citing works
ORBIT: a New Paradigm for Genetic Engineering of Mycobacterial Chromosomes
Murphy, K. C., Nelson, S. J., Nambi, S., Papavinasasundaram, K. G., Baer, C. E., & Sassetti, C. M. (2018) · mBio · doi:10.1128/mbio.01467-18 · Cited by 160 · see citing works
Mycobacterium smegmatis: The Vanguard of Mycobacterial Research
Sparks, I. L., Derbyshire, K. M., Jacobs, W. R., & Morita, Y. S. (2023) · Journal of Bacteriology · doi:10.1128/jb.00337-22 · Cited by 149 · see citing works
Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface
Siegrist, M. S., Swarts, B. M., Fox, D., Lim, S. A., & Bertozzi, C. R. (2015) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuu012 · Cited by 132 · see citing works
Maturing Mycobacterium smegmatis peptidoglycan requires non-canonical crosslinks to maintain shape
Baranowski, C., Welsh, M. A., Sham, L.-T., Eskandarian, H. A., Lim, H. C., Kieser, K. J., Wagner, J. C., McKinney, J. D., Fantner, G. E., Ioerger, T. R., et al. (2018) · eLife · doi:10.7554/elife.37516 · Cited by 132 · see citing works
Self-citationAdder and a coarse-grained approach to cell size homeostasis in bacteria
Sauls, J. T., Li, D., & Jun, S. (2016) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2016.02.004 · Cited by 124 · see citing works
Peptidoglycan precursor synthesis along the sidewall of pole-growing mycobacteria
García-Heredia, A., Pohane, A. A., Melzer, E. S., Carr, C. R., Fiolek, T. J., Rundell, S. R., Lim, H. C., Wagner, J. C., Morita, Y. S., Swarts, B. M., et al. (2018) · eLife · doi:10.7554/elife.37243 · Cited by 115 · see citing works
Vaubourgeix, J., Lin, G., Dhar, N., Chenouard, N., Jiang, X., Botella, H., Lupoli, T. J., Mariani, O., Yang, G., Ouerfelli, O., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2014.12.008 · Cited by 113 · see citing works
Self-citationKieser, K. J., Boutte, C. C., Kester, J. C., Baer, C. E., Barczak, A. K., Méniche, X., Chao, M. C., Rego, E. H., Sassetti, C. M., Fortune, S. M., et al. (2015) · PLoS Pathogens · doi:10.1371/journal.ppat.1005010 · Cited by 111 · see citing works
Membranes, energetics, and evolution across the prokaryote-eukaryote divide
Lynch, M., & Marinov, G. K. (2017) · eLife · doi:10.7554/elife.20437 · Cited by 92 · see citing works
Carel, C., Nukdee, K., Cantaloube, S., Bonne, M., Diagne, C. T., Laval, F., Daffé, M., & Zerbib, D. (2014) · PLoS ONE · doi:10.1371/journal.pone.0097148 · Cited by 90 · see citing works
Fumeaux, C., Radhakrishnan, S. K., Ardissone, S., Théraulaz, L., Frandi, A., Martins‐de‐Souza, D., Nesper, J., Abel, S., Jenal, U., & Viollier, P. H. (2014) · Nature Communications · doi:10.1038/ncomms5081 · Cited by 87 · see citing works
Phenotypic heterogeneity in persisters: a novel ‘hunker’ theory of persistence
Urbaniec, J., Xu, Y., Hu, Y., Hingley‐Wilson, S., & McFadden, J. (2021) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuab042 · Cited by 80 · see citing works
Microfluidics and single-cell microscopy to study stochastic processes in bacteria
Potvin-Trottier, L., Luro, S., & Paulsson, J. (2018) · Current Opinion in Microbiology · doi:10.1016/j.mib.2017.12.004 · Cited by 79 · see citing works
Phenotypic Heterogeneity in Mycobacterium tuberculosis
Dhar, N., McKinney, J. D., & Manina, G. (2016) · Microbiology Spectrum · doi:10.1128/microbiolspec.tbtb2-0021-2016 · Cited by 81 · see citing works
Self-citationLogsdon, M. M., Ho, P.-Y., Papavinasasundaram, K., Richardson, K., Cokol, M., Sassetti, C. M., Amir, A., & Aldridge, B. B. (2017) · Current Biology · doi:10.1016/j.cub.2017.09.046 · Cited by 69 · see citing works
Cell division in Corynebacterineae
Donovan, C., & Bramkamp, M. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00132 · Cited by 68 · see citing works
Chromosome Organization and Replisome Dynamics in Mycobacterium smegmatis
Santi, I., & McKinney, J. D. (2015) · mBio · doi:10.1128/mbio.01999-14 · Cited by 67 · see citing works
Self-citationThe essential features and modes of bacterial polar growth
Cameron, T. A., Zupan, J. R., & Zambryski, P. (2015) · Trends in Microbiology · doi:10.1016/j.tim.2015.01.003 · Cited by 59 · see citing works
Division site selection linked to inherited cell surface wave troughs in mycobacteria
Eskandarian, H. A., Odermatt, P. D., Ven, J. X. Y., Hannebelle, M. T. M., Nievergelt, A. P., Dhar, N., McKinney, J. D., & Fantner, G. E. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.94 · Cited by 60 · see citing works
Self-citationChoreography of the Mycobacterium Replication Machinery during the Cell Cycle
Trojanowski, D., Ginda, K., Pióro, M., Hołówka, J., Skut, P., Jakimowicz, D., & Zakrzewska‐Czerwińska, J. (2015) · mBio · doi:10.1128/mbio.02125-14 · Cited by 55 · see citing works
Botella, H., Yang, G., Ouerfelli, O., Ehrt, S., Nathan, C., & Vaubourgeix, J. (2017) · mBio · doi:10.1128/mbio.01183-17 · Cited by 54 · see citing works
Gorla, P., Płocińska, R., Sarva, K., Satsangi, A. T., Pandeeti, E., DONNELLY, R. J., Dziadek, J., Rajagopalan, M. R., & Madiraju, M. V. V. S. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02839 · Cited by 54 · see citing works
Melzer, E. S., Sein, C. E., Chambers, J. J., & Siegrist, M. S. (2018) · Cytoskeleton · doi:10.1002/cm.21490 · Cited by 54 · see citing works
Temporal and intrinsic factors of rifampicin tolerance in mycobacteria
Richardson, K., Bennion, O. T., Tan, S., Hoang, A. N., Cokol, M., & Aldridge, B. B. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1600372113 · Cited by 53 · see citing works
DNA Replication in Mycobacterium tuberculosis
Ditse, Z., Lamers, M. H., & Warner, D. F. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.tbtb2-0027-2016 · Cited by 54 · see citing works
Logsdon, M. M., & Aldridge, B. B. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00514 · Cited by 52 · see citing works
The evolving biology of Mycobacterium tuberculosis drug resistance
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Raffetseder, J., Pienaar, E., Blomgran, R., Eklund, D., Brodin, V. P., Andersson, H., Welin, A., & Lerm, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0112426 · Cited by 55 · see citing works
Wu, M.-L., Gengenbacher, M., & Dick, T. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00947 · Cited by 54 · see citing works
A microfluidic cell-trapping device for single-cell tracking of host–microbe interactions
Delincé, M., Bureau, J.-B., López-Jiménez, A. T., Cosson, P., Soldati, T., & McKinney, J. D. (2016) · Lab on a Chip · doi:10.1039/c6lc00649c · Cited by 51 · see citing works
Self-citationThe Antituberculosis Drug Ethambutol Selectively Blocks Apical Growth in CMN Group Bacteria
Schubert, K., Sieger, B., Meyer, F., Giacomelli, G., Böhm, K., Rieblinger, A., Lindenthal, L., Sachs, N., Wanner, G., & Bramkamp, M. (2017) · mBio · doi:10.1128/mbio.02213-16 · Cited by 50 · see citing works
Mycobacteria Modify Their Cell Size Control under Sub-Optimal Carbon Sources
Priestman, M., Thomas, P., Robertson, B. D., & Shahrezaei, V. (2017) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2017.00064 · Cited by 48 · see citing works
A biphasic growth model for cell pole elongation in mycobacteria
Hannebelle, M. T. M., Ven, J. X. Y., Toniolo, C., Eskandarian, H. A., Vuaridel‐Thurre, G., McKinney, J. D., & Fantner, G. E. (2020) · Nature Communications · doi:10.1038/s41467-019-14088-z · Cited by 47 · see citing works
Self-citationEmerging technologies and infection models in cellular microbiology
López-Jiménez, A. T., & Mostowy, S. (2021) · Nature Communications · doi:10.1038/s41467-021-26641-w · Cited by 47 · see citing works
Vijay, S., Vinh, D. N., Hai, H. T., Ha, V. T. N., Dung, V. T. M., Dinh, T. D., Nhung, H. N., Tram, T. T. B., Aldridge, B. B., Hanh, N. T., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.02296 · Cited by 42 · see citing works
Płocińska, R., Martinez, L., Gorla, P., Pandeeti, E., Sarva, K., Błaszczyk, E., Dziadek, J., Madiraju, M., & Rajagopalan, M. (2014) · Journal of Bacteriology · doi:10.1128/jb.01795-14 · Cited by 43 · see citing works
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M ycobacterium tuberculosis ori C sequestration by MtrA response regulator
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Vijay, S., Nair, R. R., Sharan, D., Jakkala, K., Mukkayyan, N., Swaminath, S., Pradhan, A., Joshi, N. V., & Ajitkumar, P. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00463 · Cited by 36 · see citing works
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Preexisting variation in DNA damage response predicts the fate of single mycobacteria under stress
Manina, G., Griego, A., Singh, L. K., McKinney, J. D., & Dhar, N. (2019) · The EMBO Journal · doi:10.15252/embj.2019101876 · Cited by 33 · see citing works
Self-citationSenzani, S., Li, D., Bhaskar, A., Ealand, C. S., Chang, J. D., Rimal, B., Liu, C., Kim, S. J., Dhar, N., & Kana, B. D. (2017) · Scientific Reports · doi:10.1038/s41598-017-01184-7 · Cited by 34 · see citing works
Self-citationHohl, M., Remm, S., Eskandarian, H. A., Molin, M. D., Arnold, F. M., Hürlimann, L. M., Krügel, A., Fantner, G. E., Sander, P., & Seeger, M. A. (2019) · Molecular Microbiology · doi:10.1111/mmi.14220 · Cited by 33 · see citing works
Baranowski, C., Rego, E. H., & Rubin, E. J. (2019) · Microbiology Spectrum · doi:10.1128/microbiolspec.gpp3-0008-2018 · Cited by 34 · see citing works
Reaction-induced phase transitions with block copolymers in solution and bulk
Lequieu, J. P., & Magenau, A. J. D. (2020) · Polymer Chemistry · doi:10.1039/d0py00722f · Cited by 34 · see citing works
The studies of ParA and ParB dynamics reveal asymmetry of chromosome segregation in mycobacteria
Ginda, K., Santi, I., Bousbaine, D., Zakrzewska‐Czerwińska, J., Jakimowicz, D., & McKinney, J. D. (2017) · Molecular Microbiology · doi:10.1111/mmi.13712 · Cited by 30 · see citing works
Self-citationSpatial control of cell envelope biosynthesis in mycobacteria
Puffal, J., García‐Heredia, A., Rahlwes, K. C., Siegrist, M. S., & Morita, Y. S. (2018) · Pathogens and Disease · doi:10.1093/femspd/fty027 · Cited by 29 · see citing works
Odermatt, P. D., Hannebelle, M. T. M., Eskandarian, H. A., Nievergelt, A. P., McKinney, J. D., & Fantner, G. E. (2019) · Nature Physics · doi:10.1038/s41567-019-0679-1 · Cited by 32 · see citing works
Self-citationBacterial cell proliferation: from molecules to cells
Meunier, A., Cornet, F., & Campos, M. (2020) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaa046 · Cited by 33 · see citing works
Multifork chromosome replication in slow-growing bacteria
Trojanowski, D., Hołówka, J., Ginda, K., Jakimowicz, D., & Zakrzewska‐Czerwińska, J. (2017) · Scientific Reports · doi:10.1038/srep43836 · Cited by 30 · see citing works
Live Imaging of Mycobacterium marinum Infection in Dictyostelium discoideum
Barisch, C., López-Jiménez, A. T., & Soldati, T. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-2450-9_23 · Cited by 31 · see citing works
Singh, V., Dhar, N., Pató, J., Kolly, G. S., Korduláková, J., Forbak, M., Evans, J. C., Székely, R., Rybniker, J., Palčeková, Z., et al. (2017) · Molecular Microbiology · doi:10.1111/mmi.13535 · Cited by 25 · see citing works
Self-citationTrojanowski, D., Kołodziej, M., Hołówka, J., Müller, R., & Zakrzewska‐Czerwińska, J. (2019) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00739-19 · Cited by 26 · see citing works
Epigenetic Phosphorylation Control of Mycobacterium tuberculosis Infection and Persistence
Richard‐Greenblatt, M., & Av‐Gay, Y. (2017) · Microbiology Spectrum · doi:10.1128/microbiolspec.tbtb2-0005-2015 · Cited by 29 · see citing works
Where and When Bacterial Chromosome Replication Starts: A Single Cell Perspective
Trojanowski, D., Hołówka, J., & Zakrzewska‐Czerwińska, J. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02819 · Cited by 28 · see citing works
Lynch, M. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780192847287.003.0009 · Cited by 29 · see citing works
Highly Deviated Asymmetric Division in Very Low Proportion of Mycobacterial Mid-log Phase Cells
Vijay, S., Mukkayyan, N., & Ajitkumar, P. (2014) · The Open Microbiology Journal · doi:10.2174/1874285801408010040 · Cited by 26 · see citing works
Böhm, K., Meyer, F., Rhomberg, A., Kalinowski, J., Donovan, C., & Bramkamp, M. (2017) · mBio · doi:10.1128/mbio.00511-17 · Cited by 26 · see citing works
Lipoarabinomannan mediates localized cell wall integrity during division in mycobacteria
Sparks, I. L., Kado, T., Prithviraj, M., Nijjer, J., Yan, J. Q., & Morita, Y. S. (2024) · Nature Communications · doi:10.1038/s41467-024-46565-5 · Cited by 24 · see citing works
Targeting de novo purine biosynthesis for tuberculosis treatment
Lamprecht, D. A., Wall, R. J., Leemans, A., Truebody, B., Sprangers, J., Fiogbe, P., Davies, C., Wetzel, J., Daems, S., Pearson, W., et al. (2025) · Nature · doi:10.1038/s41586-025-09177-7 · Cited by 24 · see citing works
Self-citationHołówka, J., Trojanowski, D., Janczak, M., Jakimowicz, D., & Zakrzewska‐Czerwińska, J. (2018) · Journal of Bacteriology · doi:10.1128/jb.00044-18 · Cited by 22 · see citing works
Sommer, R., Neres, J., Piton, J., Dhar, N., van der Sar, A. M., Mukherjee, R., Laroche, T., Dyson, P. J., McKinney, J. D., Bitter, W., et al. (2018) · ACS Chemical Biology · doi:10.1021/acschembio.8b00790 · Cited by 24 · see citing works
Self-citationSingle-Cell Analysis of Mycobacteria Using Microfluidics and Time-Lapse Microscopy
Dhar, N., & Manina, G. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-2450-9_14 · Cited by 24 · see citing works
Self-citationSingle-cell growth inference of Corynebacterium glutamicum reveals asymptotically linear growth
Messelink, J. J. B., Meyer, F., Bramkamp, M., & Broedersz, C. P. (2021) · eLife · doi:10.7554/elife.70106 · Cited by 22 · see citing works
Cell-Cycle-Associated Expression Patterns Predict Gene Function in Mycobacteria
Bandekar, A. C., Subedi, S., Ioerger, T. R., & Sassetti, C. M. (2020) · Current Biology · doi:10.1016/j.cub.2020.07.070 · Cited by 20 · see citing works
Parbhoo, T., Sampson, S. L., & Mouton, J. (2020) · Cytometry Part A · doi:10.1002/cyto.a.24030 · Cited by 20 · see citing works
Mishra, A., & Sarkar, D. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00451 · Cited by 20 · see citing works
Methods to monitor bacterial growth and replicative rates at the single-cell level
Marro, F. C., Laurent, F. J., Josse, J., & Blocker, A. (2022) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuac030 · Cited by 19 · see citing works
Pióro, M., Małecki, T., Portas, M., Magierowska, I., Trojanowski, D., Sherratt, D. J., Zakrzewska‐Czerwińska, J., Ginda, K., & Jakimowicz, D. (2018) · Molecular Microbiology · doi:10.1111/mmi.14149 · Cited by 19 · see citing works
Martínez, M., Petit, J., Leyva, A., Sogues, A., Megrian, D., Rodríguez, A., Gaday, Q., Assaya, M. B., Portela, M. M., Haouz, A., et al. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01473-0 · Cited by 16 · see citing works
Characterization of putative DD-carboxypeptidase-encoding genes in Mycobacterium smegmatis
Ealand, C. S., Asmal, R., Mashigo, L., Campbell, L. J., & Kana, B. D. (2019) · Scientific Reports · doi:10.1038/s41598-019-41001-x · Cited by 17 · see citing works
BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies
Mekterović, I., Mekterović, D., & Maglica, Ž. (2014) · BMC Bioinformatics · doi:10.1186/1471-2105-15-251 · Cited by 17 · see citing works
Ghosh, S., Samaddar, S., Kirtania, P., & GUPTA, S. K. (2015) · Journal of Bacteriology · doi:10.1128/jb.00669-15 · Cited by 17 · see citing works
Peptidoglycan in Mycobacteria: chemistry, biology and intervention
Raghavendra, T., Patil, S., & Mukherjee, R. (2018) · Glycoconjugate Journal · doi:10.1007/s10719-018-9842-7 · Cited by 17 · see citing works
A cell wall synthase accelerates plasma membrane partitioning in mycobacteria
Kado, T., Akbary, Z., Motooka, D., Sparks, I. L., Melzer, E. S., Nakamura, S., Rojas, E., Morita, Y. S., & Siegrist, M. S. (2023) · eLife · doi:10.7554/elife.81924 · Cited by 14 · see citing works
Polar protein Wag31 both activates and inhibits cell wall metabolism at the poles and septum
Arejan, N. H., Ensinck, D., Diacovich, L., Patel, P., Quintanilla, S. Y., Saleh, A. E., Gramajo, H., & Boutte, C. C. (2022) · bioRxiv · doi:10.3389/fmicb.2022.1085918 · Cited by 12 · see citing works
Investigating the composition and recruitment of the mycobacterial ImuA′–ImuB–DnaE2 mutasome
Gessner, S. J., Martin, Z. A.-M., Reiche, M. A., Santos, J. A., Dinkele, R., Ramudzuli, A., Dhar, N., de Wet, T. J., Anoosheh, S., Lang, D. M., et al. (2023) · eLife · doi:10.7554/elife.75628 · Cited by 15 · see citing works
Self-citationArejan, N. H., Czapski, D. R., Buonomo, J. A., & Boutte, C. C. (2024) · Journal of Bacteriology · doi:10.1128/jb.00204-24 · Cited by 14 · see citing works
Interfering With DNA Decondensation as a Strategy Against Mycobacteria
Scutigliani, E. M., Scholl, E. R., Grootemaat, A. E., Khanal, S., Kochan, J. A., Krawczyk, P. M., Reits, E. A., Garzan, A., Ngo, H., Green, K. D., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02034 · Cited by 14 · see citing works
Mishra, S., & Saito, K. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.1029111 · Cited by 14 · see citing works
Levin, P. A., & Taheri-Araghi, S. (2019) · Journal of Molecular Biology · doi:10.1016/j.jmb.2019.04.004 · Cited by 13 · see citing works
Higher order assembling of the mycobacterial essential polar growth factor DivIVA/Wag31
Choukate, K., Gupta, A., Basu, B., Virk, K., Ganguli, M., & Chaudhuri, B. N. (2018) · Journal of Structural Biology · doi:10.1016/j.jsb.2019.107429 · Cited by 12 · see citing works
López-Jiménez, A. T., Hagedorn, M., Delincé, M., McKinney, J. D., & Soldati, T. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/586263 · Cited by 10 · see citing works
Self-citationKirtania, P., Ghosh, S., Bhawsinghka, N., Chakladar, M., & GUPTA, S. K. (2016) · FEMS Microbiology Letters · doi:10.1093/femsle/fnw097 · Cited by 9 · see citing works
Antibiotic chemotherapy against heterogeneous pathogen populations in complex host tissues
Bumann, D., Fanous, J., Li, J., & Goormaghtigh, F. (2019) · F1000Research · doi:10.12688/f1000research.19441.1 · Cited by 8 · see citing works
- Authors
- Santi, I., Dhar, N., Bousbaine, D., Wakamoto, Y., & McKinney, J. D.
- Affiliations
- École Polytechnique Fédérale de Lausanne (CH)
- The University of Tokyo (JP)
- Corresponding author
- Santi, Isabella
- Venue
- Nature Communications
- Published
- 2013-09-16
- Volume
- 4
- Issue
- 1
- Pages
- 2470-2470
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2018825030
- Cited by
- 170
- References
- 39
- Citations by year
- 2026: 2 · 2025: 9 · 2024: 9 · 2023: 13 · 2022: 9 · 2021: 11 · 2020: 12 · 2019: 17 · 2018: 26 · 2017: 23 · 2016: 10 · 2015: 15 · 2014: 13
- FWCI
- 8.38
- Type
- journal article
- Language
- en
- Update notices
- erratum (2013-12-03)
- Open access
- bronze
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Infoscience (Ecole Polytechnique Fédérale de Lausanne) (submittedVersion)
- Infoscience (Ecole Polytechnique Fédérale de Lausanne) (submittedVersion, cc-by-nc-nd)
- Funders
- National Science Foundation
- Bill and Melinda Gates Foundation
- Ministry of Education, Culture, Sports, Science and Technology
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (135639)
- National Institutes of Health
- Japan Society for the Promotion of Science (25711008)
- National Heart, Lung, and Blood Institute (HL088906, R01HL088906)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Keywords
- bacterial cell cycle, chromosome replication, cell division, Mycobacterium smegmatis, cell size homeostasis, size-dependent growth, asymmetric cell division, single-cell dynamics, cytokinesis, antibiotic susceptibility, microfluidics, time-lapse fluorescence microscopy
- MeSH terms
- Anti-Bacterial Agents, Bacterial Proteins, Cell Division, Chromosomes, Bacterial, DNA Replication, Homeostasis, Mycobacterium smegmatis, Protein Transport, Cell Size, Cytokinesis, Cell Proliferation, Green Fluorescent Proteins, Time-Lapse Imaging, Single-Cell Analysis
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