A draft network of ligand–receptor-mediated multicellular signalling in human

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12. A single-cell transcriptome atlas profiles early organogenesis in human embryos
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13. Lgr5+ telocytes are a signaling source at the intestinal villus tip
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14. Progress in multicellular human cardiac organoids for clinical applications
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15. Cell lineage and communication network inference via optimization for single-cell transcriptomics
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16. LGR5 expressing skin fibroblasts define a major cellular hub perturbed in scleroderma
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17. Cardiac fibroblasts regulate the development of heart failure via Htra3-TGF-β-IGFBP7 axis
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18. Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos
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20. Understanding cell‐cell communication and signaling in the colorectal cancer microenvironment
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21. MicroRNA-21–Dependent Macrophage-to-Fibroblast Signaling Determines the Cardiac Response to Pressure Overload
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22. Acute liver failure is regulated by MYC- and microbiome-dependent programs
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23. Analysis of Donor Pancreata Defines the Transcriptomic Signature and Microenvironment of Early Neoplastic Lesions
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27. Single-cell transcriptomics and surface epitope detection in human brain epileptic lesions identifies pro-inflammatory signaling
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28. Comparative analysis of cell–cell communication at single-cell resolution
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29. scRNA-seq of human vitiligo reveals complex networks of subclinical immune activation and a role for CCR5 in T reg function
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30. Hippo pathway deletion in adult resting cardiac fibroblasts initiates a cell state transition with spontaneous and self-sustaining fibrosis
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31. Multicellular communities are perturbed in the aging human brain and Alzheimer’s disease
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32. Computation and visualization of cell–cell signaling topologies in single-cell systems data using Connectome
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33. Interpretable systems biomarkers predict response to immune-checkpoint inhibitors
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34. CytoTalk: De novo construction of signal transduction networks using single-cell transcriptomic data
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35. Estimation of cell lineages in tumors from spatial transcriptomics data
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36. Giotto, a toolbox for integrative analysis and visualization of spatial expression data
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37. Universal recording of immune cell interactions in vivo
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38. Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease
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39. Cancer-associated fibroblast subtypes modulate the tumor-immune microenvironment and are associated with skin cancer malignancy
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40. Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma
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41. Single-cell transcriptomics analyses of neural stem cell heterogeneity and contextual plasticity in a zebrafish brain model of amyloid toxicity
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42. Wnt Signaling Separates the Progenitor and Endocrine Compartments during Pancreas Development
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43. A physical wiring diagram for the human immune system
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44. Comprehensive visualization of cell–cell interactions in single-cell and spatial transcriptomics with NICHES
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45. The Alzheimer’s gene SORL1 is a regulator of endosomal traffic and recycling in human neurons
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46. Spatial transcriptomics reveals tryptophan metabolism restricting maturation of intratumoral tertiary lymphoid structures
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47. Computational solutions for spatial transcriptomics
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48. Clonally expanded, GPR15-expressing pathogenic effector T H 2 cells are associated with eosinophilic esophagitis
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49. Ovarian cancer-derived IL-4 promotes immunotherapy resistance
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50. Dermal Condensate Niche Fate Specification Occurs Prior to Formation and Is Placode Progenitor Dependent
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51. Cellular heterogeneity landscape in laryngeal squamous cell carcinoma
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52. Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing
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53. Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
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54. Distinct regional ontogeny and activation of tumor associated macrophages in human glioblastoma
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55. An Atlas of Protein-Protein Interactions Across Mouse Tissues
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56. DIALOGUE maps multicellular programs in tissue from single-cell or spatial transcriptomics data
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57. Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mice Defined by Single-Cell RNA Sequencing
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58. Persistent transcriptional programmes are associated with remote memory
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59. Single-Nucleus RNA Sequencing Identifies New Classes of Proximal Tubular Epithelial Cells in Kidney Fibrosis
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62. Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA
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63. Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma
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66. Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer
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68. Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis
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73. Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis
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75. In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes
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77. Unravelling glioblastoma heterogeneity by means of single-cell RNA sequencing
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78. Ewing Sarcoma and Osteosarcoma Have Distinct Immune Signatures and Intercellular Communication Networks
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83. Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir
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86. Single-cell transcriptome-based multilayer network biomarker for predicting prognosis and therapeutic response of gliomas
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87. A single-cell transcriptomic landscape of mouse testicular aging
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88. Single-Nucleus RNA-Sequencing Profiling of Mouse Lung. Reduced Dissociation Bias and Improved Rare Cell-Type Detection Compared with Single-Cell RNA Sequencing
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89. Single-cell RNA-seq of heart reveals intercellular communication drivers of myocardial fibrosis in diabetic cardiomyopathy
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90. Single-Cell Analysis Reveals Distinct Immune and Smooth Muscle Cell Populations that Contribute to Chronic Thromboembolic Pulmonary Hypertension
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91. Heterogeneity in endothelial cells and widespread venous arterialization during early vascular development in mammals
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92. Immune landscape in invasive ductal and lobular breast cancer reveals a divergent macrophage-driven microenvironment
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94. Single-cell RNA-seq dissects the intratumoral heterogeneity of triple-negative breast cancer based on gene regulatory networks
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95. Single-Cell Transcriptional Survey of Ileal-Anal Pouch Immune Cells From Ulcerative Colitis Patients
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96. A proteomic atlas of ligand–receptor interactions at the ovine maternal–fetal interface reveals the role of histone lactylation in uterine remodeling
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97. Single cell RNA‐sequencing: A powerful yet still challenging technology to study cellular heterogeneity
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98. Single-cell omics: experimental workflow, data analyses and applications
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99. Immunology in the Era of Single-Cell Technologies
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