Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

Cited by (1,003)

Items 301–400 of 1,003

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2. LPA Variants Are Associated With Residual Cardiovascular Risk in Patients Receiving Statins
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4. Imputation to whole-genome sequence using multiple pig populations and its use in genome-wide association studies
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5. Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease
   Hong‐Hee Won, Pradeep Natarajan, Amanda L. Dobbyn, Daniel M. Jordan, Panos Roussos, Kasper Lage, Soumya Raychaudhuri, Eli A. Stahl, Ron Do · 2015 · PLoS Genetics
6. High-throughput screening of prostate cancer risk loci by single nucleotide polymorphisms sequencing
   Peng Zhang, Ji‐Han Xia, Jing Zhu, Ping Hui Gao, Yijun Tian, Meijun Du, Yong-Chen Guo, Sufyan Suleman, Qin Zhang, Manish Kohli et al. · 2018 · Nature Communications
7. A comprehensive survey of genetic variation in 20,691 subjects from four large cohorts
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9. A meta-analysis of Hodgkin lymphoma reveals 19p13.3 TCF3 as a novel susceptibility locus
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10. Genetic History of Xinjiang’s Uyghurs Suggests Bronze Age Multiple-Way Contacts in Eurasia
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11. Fine Mapping Implicates a Deletion of CFHR1 and CFHR3 in Protection from IgA Nephropathy in Han Chinese
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12. Genetic variation at 16q24.2 is associated with small vessel stroke
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13. A Comprehensive cis-eQTL Analysis Revealed Target Genes in Breast Cancer Susceptibility Loci Identified in Genome-wide Association Studies
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14. A reference panel of 64,976 haplotypes for genotype imputation
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15. Comparison of different methods for imputing genome-wide marker genotypes in Swedish and Finnish Red Cattle
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16. A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach
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17. Genome-wide Analysis of Body Proportion Classifies Height-Associated Variants by Mechanism of Action and Implicates Genes Important for Skeletal Development
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18. Genetic influences on plasma CFH and CFHR1 concentrations and their role in susceptibility to age-related macular degeneration
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19. A Burden of Rare Variants Associated with Extremes of Gene Expression in Human Peripheral Blood
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20. Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer
    M. Eileen Dolan, Omar El Charif, Heather E. Wheeler, Eric R. Gamazon, Shirin Ardeshir‐Rouhani‐Fard, Patrick O. Monahan, Darren Richard Feldman, Robert J. Hamilton, David J. Vaughn, Clair J. Beard et al. · 2017 · Clinical Cancer Research
21. Genomic analyses in African populations identify novel risk loci for cleft palate
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22. Genome-Wide Association Study of Personality Traits in the Long Life Family Study
    Harold T. Bae, Paola Sebastiani, Fangui X. Sun, Stacy L. Andersen, E. Warwick Daw, Antonio Terracciano, Luigi Ferrucci, Thomas T. Perls · 2013 · Frontiers in Genetics
23. Genetic variants linked to myopic macular degeneration in persons with high myopia: CREAM Consortium
    Yee-Ling Wong, Pirro G. Hysi, Chui Ming Gemmy Cheung, Milly S. Tedja, Quan V. Hoang, Stuart W. J. Tompson, Kristina N. Whisenhunt, Virginie J. M. Verhoeven, Wanting Zhao, Moritz Hess et al. · 2019 · PLoS ONE
24. A genome-wide association study identifies four novel susceptibility loci underlying inguinal hernia
    Eric Jorgenson, Nadja Makki, Ling Shen, David C. Chen, Chao Tian, Walter L. Eckalbar, David A. Hinds, Nadav Ahituv, Andrew L. Avins · 2015 · Nature Communications
25. The TMEM106B FTLD-protective variant, rs1990621, is also associated with increased neuronal proportion
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26. Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows
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27. Shared genetic etiology underlying Alzheimer’s disease and type 2 diabetes
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28. “Gap hunting” to characterize clustered probe signals in Illumina methylation array data
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29. Association of genetic variation in the tachykinin receptor 3 locus with hot flashes and night sweats in the Women's Health Initiative Study
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30. Common variants at PVT1, ATG13–AMBRA1, AHI1 and CLEC16A are associated with selective IgA deficiency
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31. Comparative genetic architectures of schizophrenia in East Asian and European populations
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32. New Loci and Neuronal Pathways for Resilience to Heat Stress in Cattle
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33. Genome-wide identification of circulating-miRNA expression quantitative trait loci reveals the role of several miRNAs in the regulation of cardiometabolic phenotypes
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34. Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder
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35. Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation
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36. Ethnic and trans-ethnic genome-wide association studies identify new loci influencing Japanese Alzheimer’s disease risk
    Shigemizu, Daichi, Mitsumori, Risa, Akiyama, Shintaro, Miyashita, Akinori, Morizono, Takashi, Higaki, Sayuri, Asanomi, Yuya, Hara, Norikazu, Tamiya, Gen, Kinoshita, Kengo et al. · 2021 · Translational Psychiatry
37. Variants in WFS1 and Other Mendelian Deafness Genes Are Associated with Cisplatin-Associated Ototoxicity
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38. eXclusionarY: 10 years later, where are the sex chromosomes in GWASs?
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39. Genetically adjusted PSA levels for prostate cancer screening
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40. Genetic and clinical factors associated with obesity among adult survivors of childhood cancer: A report from the St. Jude Lifetime Cohort
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41. A Cross-Cancer Genetic Association Analysis of the DNA Repair and DNA Damage Signaling Pathways for Lung, Ovary, Prostate, Breast, and Colorectal Cancer
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42. The presence of methylation quantitative trait loci indicates a direct genetic influence on the level of DNA methylation in adipose tissue
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43. Amino Acid Variation in HLA Class II Proteins Is a Major Determinant of Humoral Response to Common Viruses
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44. Discovery and refinement of genetic loci associated with cardiometabolic risk using dense imputation maps
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45. Ultrafast homomorphic encryption models enable secure outsourcing of genotype imputation
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46. Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle
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47. Genome-wide association study of coronary artery calcified atherosclerotic plaque in African Americans with type 2 diabetes
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48. Meta-analysis of genome-wide association data identifies novel susceptibility loci for obesity
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49. Targeted neurogenesis pathway-based gene analysis identifies ADORA2A associated with hippocampal volume in mild cognitive impairment and Alzheimer's disease
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50. Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
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51. Quality control, imputation and analysis of genome-wide genotyping data from the Illumina HumanCoreExome microarray
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54. Association of Genetic Variants With Primary Open-Angle Glaucoma Among Individuals With African Ancestry
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55. Dissecting clinical heterogeneity of bipolar disorder using multiple polygenic risk scores
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56. A Common Functional Regulatory Variant at a Type 2 Diabetes Locus Upregulates ARAP1 Expression in the Pancreatic Beta Cell
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57. Genetics of Allergic Diseases
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58. A reference haplotype panel for genome-wide imputation of short tandem repeats
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59. Common and rare von Willebrand factor (VWF) coding variants, VWF levels, and factor VIII levels in African Americans: the NHLBI Exome Sequencing Project
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61. Genetic variants associated with disordered eating
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62. Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density
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63. Genome-wide association analyses based on whole-genome sequencing in Sardinia provide insights into regulation of hemoglobin levels
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64. Comprehensive Assessment of Genotype Imputation Performance
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65. Accuracy of imputation to whole-genome sequence in sheep
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66. OUP accepted manuscript
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67. Trans-ethnic meta-analysis of white blood cell phenotypes
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68. Genetic comorbidities in Parkinson's disease
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72. Genetic variants near MLST8 and DHX57 affect the epigenetic age of the cerebellum
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73. The importance of cohort studies in the post-GWAS era
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74. Polygenic risk for schizophrenia and measured domains of cognition in individuals with psychosis and controls
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75. GWAS of smoking behaviour in 165,436 Japanese people reveals seven new loci and shared genetic architecture
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77. Evaluation of voltage-dependent calcium channel γ gene families identified several novel potential susceptible genes to schizophrenia
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78. Epigenome-wide association study of metabolic syndrome in African-American adults
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79. Polygenic risk alters the penetrance of monogenic kidney disease
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80. Premorbid risk factors for major depressive disorder: Are they associated with early onset and recurrent course?
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81. Smoking and Risk of Multiple Sclerosis
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82. GWAS identifies two novel colorectal cancer loci at 16q24.1 and 20q13.12
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83. Early progression to active tuberculosis is a highly heritable trait driven by 3q23 in Peruvians
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84. Quality Control Procedures for Genome‐Wide Association Studies
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85. A Systematic Mapping Approach of 16q12.2/FTO and BMI in More Than 20,000 African Americans Narrows in on the Underlying Functional Variation: Results from the Population Architecture using Genomics and Epidemiology (PAGE) Study
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86. Pathway analysis of complex diseases for GWAS, extending to consider rare variants, multi-omics and interactions
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87. Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: I. Genetic parameter estimation and accuracy of genomic prediction
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88. Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle: A Simulation Study
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89. Novel Association of Genetic Markers Affecting CYP2A6 Activity and Lung Cancer Risk
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