Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

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9. Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits
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12. Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel
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13. Genome-wide association analysis of venous thromboembolism identifies new risk loci and genetic overlap with arterial vascular disease
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14. Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma
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15. Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups
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16. Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
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17. Classic Selective Sweeps Revealed by Massive Sequencing in Cattle
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18. Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls
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19. Genome-wide association study identifies four novel loci associated with Alzheimer’s endophenotypes and disease modifiers
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20. Genotype Imputation from Large Reference Panels
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21. Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk
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22. Selection, optimization and validation of ten chronic disease polygenic risk scores for clinical implementation in diverse US populations
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23. Trans-ethnic genome-wide association studies: advantages and challenges of mapping in diverse populations
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24. An epigenome-wide association study of total serum immunoglobulin E concentration
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25. Genetic regulatory signatures underlying islet gene expression and type 2 diabetes
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26. Multi-Population Classical HLA Type Imputation
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27. 10-year trajectory of β-cell function and insulin sensitivity in the development of type 2 diabetes: a community-based prospective cohort study
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28. Genome-wide association study of 40,000 individuals identifies two novel loci associated with bipolar disorder
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29. Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
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30. Haplotype estimation for biobank-scale data sets
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31. Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits
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32. Genotype imputation using the Positional Burrows Wheeler Transform
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33. Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen
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34. GWAS of epigenetic aging rates in blood reveals a critical role for TERT
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35. Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility
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36. Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
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37. Defective HNF4alpha-dependent gene expression as a driver of hepatocellular failure in alcoholic hepatitis
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38. APOE and BCHE as modulators of cerebral amyloid deposition: a florbetapir PET genome-wide association study
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39. A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation
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40. Application of genotyping by sequencing technology to a variety of crop breeding programs
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41. Epilepsy, hippocampal sclerosis and febrile seizures linked by common genetic variation around SCN1A
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42. A novel locus of resistance to severe malaria in a region of ancient balancing selection
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43. Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci
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44. A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features
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45. A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes
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46. A functional splice variant associated with decreased asthma risk abolishes the ability of gasdermin B to induce epithelial cell pyroptosis
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47. Fast and accurate imputation of summary statistics enhances evidence of functional enrichment
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48. Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits
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49. Evidence for genetic heterogeneity between clinical subtypes of bipolar disorder
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50. HLA-DQA1–HLA-DRB1 variants confer susceptibility to pancreatitis induced by thiopurine immunosuppressants
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51. Genetic analyses support the contribution of mRNA N6-methyladenosine (m6A) modification to human disease heritability
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52. Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins
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53. Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis
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54. A multiethnic genome-wide association study of primary open-angle glaucoma identifies novel risk loci
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55. A Large Multiethnic Genome-Wide Association Study of Adult Body Mass Index Identifies Novel Loci
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56. Assessment of the Genetic Basis of Rosacea by Genome-Wide Association Study
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57. Strong effects of genetic and lifestyle factors on biomarker variation and use of personalized cutoffs
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58. Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load
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59. A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia
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60. New loci and coding variants confer risk for age-related macular degeneration in East Asians
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61. Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies
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62. DNA methylation in lung cells is associated with asthma endotypes and genetic risk
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63. Fast set-based association analysis using summary data from GWAS identifies novel gene loci for human complex traits
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64. Common polygenic risk for autism spectrum disorder (ASD) is associated with cognitive ability in the general population
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65. Germline genetic contribution to the immune landscape of cancer
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66. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles
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67. A Fast and Simple Method for Detecting Identity-by-Descent Segments in Large-Scale Data
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68. Brain network dynamics during working memory are modulated by dopamine and diminished in schizophrenia
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69. Genome-wide association studies in the Japanese population identify seven novel loci for type 2 diabetes
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70. Polygenic risk of Alzheimer disease is associated with early- and late-life processes
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71. GWAS Identifies 44 Independent Associated Genomic Loci for Self-Reported Adult Hearing Difficulty in UK Biobank
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72. Genetic architecture of human plasma lipidome and its link to cardiovascular disease
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73. Genome-wide association study of caffeine metabolites provides new insights to caffeine metabolism and dietary caffeine-consumption behavior
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74. Novel multiple sclerosis susceptibility loci implicated in epigenetic regulation
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75. GWAS and colocalization analyses implicate carotid intima-media thickness and carotid plaque loci in cardiovascular outcomes
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76. Fine-mapping of 150 breast cancer risk regions identifies 191 likely target genes
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77. Growth Differentiation Factor 15 as a Novel Biomarker for Metformin
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78. Genome-wide polygenic score to predict chronic kidney disease across ancestries
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79. Genetic and environmental exposures constrain epigenetic drift over the human life course
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80. Circulating vitamin D concentration and risk of seven cancers: Mendelian randomisation study
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81. Susceptibility to tuberculosis is associated with variants in the ASAP1 gene encoding a regulator of dendritic cell migration
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82. Genome-wide association study of colorectal cancer identifies six new susceptibility loci
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83. Predicting educational achievement from DNA
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84. Genome‐Wide Association Study in an Amerindian Ancestry Population Reveals Novel Systemic Lupus Erythematosus Risk Loci and the Role of European Admixture
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85. Smoking induces coordinated DNA methylation and gene expression changes in adipose tissue with consequences for metabolic health
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86. Genome-wide association study identifies 48 common genetic variants associated with handedness
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87. Improved Ancestry Estimation for both Genotyping and Sequencing Data using Projection Procrustes Analysis and Genotype Imputation
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88. A harmonized public resource of deeply sequenced diverse human genomes
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89. A Genome-Wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes
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90. Increased High-Density Lipoprotein Levels Associated with Age-Related Macular Degeneration
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91. Low-frequency and common genetic variation in ischemic stroke
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