Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

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30. Androgenetic Alopecia: Identification of Four Genetic Risk Loci and Evidence for the Contribution of WNT Signaling to Its Etiology
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35. Quantifying Missing Heritability at Known GWAS Loci
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59. Statistical methods for genome-wide association studies
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72. Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues
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74. Statistical analysis for genome-wide association study
    Zeng Ping, Yang Zhao, Qian Cheng, Zhang Li-wei, Ruyang Zhang, Gou Jianwei, Liu Jin, Liu Liya, Chen Feng · 2015 · Journal of Biomedical Research
75. The Norwegian Mother, Father, and Child cohort study (MoBa) genotyping data resource: MoBaPsychGen pipeline v.1
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    Dan Rosmarin, Claire Palles, Alistair T. Pagnamenta, Kulvinder Kaur, Guillermo Pita, Miguel Martín, Enric Domingo, Angela Jones, Kimberley M. Howarth, Luke Freeman-Mills et al. · 2014 · Gut
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80. A Nonsense Mutation in TMEM95 Encoding a Nondescript Transmembrane Protein Causes Idiopathic Male Subfertility in Cattle
    Hubert Pausch, Sabine Kölle, Christine Wurmser, Hermann Schwarzenbacher, Reiner Emmerling, Sandra Jansen, Matthias Trottmann, C. Fuerst, Kay‐Uwe Götz, Ruedi Fries · 2014 · PLoS Genetics
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    Linda M Boettger, Rany M. Salem, Robert E. Handsaker, Gina Marie Peloso, Sekar Kathiresan, Joel N. Hirschhorn, Steven A. McCarroll · 2016 · Nature Genetics
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85. Application of neural networks with back-propagation to genome-enabled prediction of complex traits in Holstein-Friesian and German Fleckvieh cattle
    Anita Ehret, David Hochstuhl, Daniel Gianola B, Georg Erwin Thaller · 2015 · Genetics Selection Evolution
86. Common Variant Burden Contributes to the Familial Aggregation of Migraine in 1,589 Families
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    Mike A. Nalls, José Brás, Dena G. Hernandez, Margaux F. Keller, Elisa Majounie, Alan Edward Renton, Mohamad Saad, Iris E. Jansen, Rita João Guerreiro, Steven J Lubbe et al. · 2014 · Neurobiology of Aging
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    Chun‐Fang Xu, Toby Johnson, Xiaojing Wang, Chris Carpenter, Alan P. Graves, Liling L. Warren, Zhengyu Xue, Karen S. King, Dana J. Fraser, Sandy Stinnett et al. · 2015 · Clinical Cancer Research
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    Lijing Yao, Benjamin P. Berman, Peggy Farnham · 2015 · Critical Reviews in Biochemistry and Molecular Biology
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    Pelikan, Richard C., Kelly, Jennifer A., Fu, Yao, Lareau, Caleb A., Tessneer, Kandice L., Wiley, Graham B., Wiley, Mandi M., Glenn, Stuart B., Harley, John B., Guthridge, Joel M. et al. · 2018 · Nature Communications
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