Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
Hughes, Jim R, Roberts, Nigel, McGowan, Simon, Hay, Deborah, Giannoulatou, Eleni, Lynch, Magnus, De Gobbi, Marco, Taylor, Stephen, Gibbons, Richard, Higgs, Douglas R·2014·Nature Genetics
DOI 10.1038/ng.2871
Cited by (490)
Items 201–300 of 490
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- CaptureCompendium: a comprehensive toolkit for 3C analysisJelena M. Telenius, Damien J. Downes, Martin J. Sergeant, A. Marieke Oudelaar, Simon J. McGowan, Jon Kerry, Lars L.P. Hanssen, Ron Schweßinger, Chris Q. Eijsbouts, James O. J. Davies et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
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- Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq).Miao Yu, Ivan Juric, Armen Abnousi, Ming Hu, B. Ren · 2021 · Methods in molecular biology
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- A modified protocol of Capture-C allows affordable and flexible high-resolution promoter interactome analysisArkadiy K. Golov, Dmitrii A. Abashkin, Nikolay V. Kondratyev, Sergey V. Razin, Alexey A. Gavrilov, Вера Евгеньевна Голимбет · 2020 · Scientific Reports
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- Making connections: enhancers in cellular differentiationJennifer Clara Herrmann, Robert A. Beagrie, Jim R. Hughes · 2021 · Trends in Genetics
- Investigation of the spatial structure and interactions of the genome at sub-kilobase-pair resolution using T2CPetros Kolovos, Rutger W. W. Brouwer, Christel E. M. Kockx, Michael Lesnussa, Nick Kepper, Jessica Zuin, A. Imam, Harmen J.G. van de Werken, Kerstin S. Wendt, Tobias Knoch et al. · 2018 · Nature Protocols
- 3D genomics and its applications in precision medicineMeng-Jie Chen, Xingyu Liu, Qing-You Liu, D. Shi, Hui Li · 2023 · Cellular & Molecular Biology Letters
- Transcriptional Regulation of the Pancreatic Islet: Implications for Islet FunctionMichael L. Stitzel, Ina Kycia, Romy Kursawe, Duygu Ucar · 2015 · Current Diabetes Reports
- Discover novel disease-associated genes based on regulatory networks of long-range chromatin interactionsHao Wang, Jiaxin Yang, Yu Zhang, Jianrong Wang · 2020 · Methods
- Advances in higher-order chromatin architecture: the move towards 4D genomeNamyoung Jung, Tae-Kyung Kim · 2021 · BMB Reports
- Predictive Polymer Models for 3D Chromosome OrganizationMichael Chiang, Giada Forte, Nick Gilbert, Davide Marenduzzo, Chris A. Brackley · 2020 · Methods in molecular biology
- Targeted Chromosome Conformation Capture (HiCap)Artemy Zhigulev, Pelin Sahlén · 2022 · Methods in molecular biology
- GOPHER: Generator Of Probes for capture Hi-C Experiments at high ResolutionP. Hansen, Salaheddine Ali, Hannah Blau, D. Danis, Jochen Hecht, U. Kornak, D. G. Lupiáñez, S. Mundlos, Robin Steinhaus, P. Robinson · 2019 · BMC Genomics
- When 3D genome technology meets viral infection, including SARS‐CoV‐2Weizheng Liang, Shuangqing Wang, Hao Wang, Xiushen Li, Qingxue Meng, Yan Zhao, Chunfu Zheng · 2022 · Journal of Medical Virology
- Three‐dimensional genome architecture in health and diseaseJean‐François Ouimette, Claire Rougeulle, Reiner A. Veitia · 2018 · Clinical Genetics
- Modeling three-dimensional genomic organization in evolution and pathogenesisAlon Diament, Tamir Tuller · 2018 · Seminars in Cell and Developmental Biology
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