De novo mutations of SETBP1 cause Schinzel-Giedion syndrome
Abstract
Schinzel-Giedion syndrome is characterized by severe mental retardation, distinctive facial features and multiple congenital malformations; most affected individuals die before the age of ten. We sequenced the exomes of four affected individuals (cases) and found heterozygous de novo variants in SETBP1 in all four. We also identified SETBP1 mutations in eight additional cases using Sanger sequencing. All mutations clustered to a highly conserved 11-bp exonic region, suggesting a dominant-negative or gain-of-function effect.
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Like 16p11.2 and 15q13.3 CNVs, mutations in SETBP1 and SCN2A have evidence of causing very different outcomes.
“Similar to CNVs of 16p11.2 and 15q13.3, which are associated with several disorders, there is evidence for this already for mutations associated with SETBP1 (SET binding protein 1) [84] and SCN2A, resulting in very different outcomes.”
From A de novo convergence of autism genetics and molecular neuroscience (2014) · cites this paper as [84]
Cites
A gene atlas of the mouse and human protein-encoding transcriptomes
Su, A. I., Wiltshire, T., Batalov, S., Lapp, H., Ching, K. A., Block, D., Zhang, J., Soden, R., Hayakawa, M., Kreiman, G., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0400782101 · Cited by 3,475 · see citing works
Targeted capture and massively parallel sequencing of 12 human exomes
Ng, S. B., Turner, E. H., Robertson, P. D., Flygare, S. D., Bigham, A. W., Lee, C., Shaffer, T., Wong, M., Bhattacharjee, A., Eichler, E. E., et al. (2009) · Nature · doi:10.1038/nature08250 · Cited by 2,030 · see citing works
Exome sequencing identifies the cause of a mendelian disorder
Ng, S. B., Buckingham, K. J., Lee, C., Bigham, A. W., Tabor, H. K., Dent, K. M., Huff, C. D., Shannon, P. T., Jabs, E. W., Nickerson, D. A., et al. (2010) · Nature Genetics · doi:10.1038/ng.499 · Cited by 1,957 · see citing works
Mutations in a new member of the chromodomain gene family cause CHARGE syndrome
Vissers, L. E. L. M., van Ravenswaaij‐Arts, C. M. A., Admiraal, R. J. C., Hurst, J. A., Vries, B. B. A. D., Janssen, I. M., van der Vliet, W. A., Huys, E., de Jong, P. J., Hamel, B. C. J., et al. (2004) · Nature Genetics · doi:10.1038/ng1407 · Cited by 1,281 · see citing works
Self-citationNOONAN SYNDROME AND RELATED DISORDERS: Genetics and Pathogenesis
Tartaglia, M., & Gelb, B. D. (2005) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.6.080604.162305 · Cited by 355 · see citing works
Schinzel, A., & Giedion, A. (1978) · American Journal of Medical Genetics · doi:10.1002/ajmg.1320010402 · Cited by 143 · see citing works
Massively parallel sequencing of ataxia genes after array-based enrichment
Hoischen, A., Gilissen, C., Arts, P., Wieskamp, N., van der Vliet, W., Vermeer, S., Steehouwer, M., de Vries, P., Meijer, R. P. P., Sequeiros, J., et al. (2010) · Human Mutation · doi:10.1002/humu.21221 · Cited by 100 · see citing works
Self-citationMinakuchi, M., Kakazu, N., Gorrín-Rivas, M. J., Abe, T., Copeland, T. D., Ueda, K., & Adachi, Y. (2001) · European Journal of Biochemistry · doi:10.1046/j.1432-1327.2001.02000.x · Cited by 96 · see citing works
SET-domain proteins of the Su(var)3-9, E(z) and Trithorax families
Álvarez-Venegas, R., & AVRAMOVA, Z. V. (2002) · Gene · doi:10.1016/s0378-1119(02)00401-8 · Cited by 83 · see citing works
There are two major types of skeletal keratan sulphates
Nieduszynski, I. A., Huckerby, T. N., Dickenson, J. M., et al. (1990) · Biochemical Journal · doi:10.1042/bj2710243 · Cited by 76 · see citing works
Panagopoulos, I., Kerndrup, G. B., Carlsen, N., Strömbeck, B., Isaksson, M., & Johansson, B. (2006) · British Journal of Haematology · doi:10.1111/j.1365-2141.2006.06410.x · Cited by 57 · see citing works
Krueger, R. C., Fields, T. A., Hildreth, J., & Schwartz, N. B. (1990) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)38509-6 · Cited by 55 · see citing works
Schinzel–Giedion syndrome: Report of splenopancreatic fusion and proposed diagnostic criteria
Lehman, A., McFadden, D. E., Pugash, D., et al. (2008) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.32277 · Cited by 54 · see citing works
Further clinical and sensorial delineation of Schinzel‐Giedion syndrome: Report of two cases
Minn, D., Christmann, D., Martin, A. D. S., et al. (2002) · American Journal of Medical Genetics · doi:10.1002/ajmg.10348 · Cited by 37 · see citing works
Delineation of a critical region on chromosome 18 for the del(18)(q12.2q21.1) syndrome
Buysse, K., Menten, B., Oostra, A., Tavernier, S., Mortier, G. R., & Speleman, F. (2008) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.32267 · Cited by 31 · see citing works
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Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
O’Roak, B. J., Vives, L., Girirajan, S., Karakoc, E., Krumm, N., Coe, B. P., Levy, R., Ko, A., Lee, C., Smith, J. D., et al. (2012) · Nature · doi:10.1038/nature10989 · Cited by 2,165 · see citing works
Self-citationMultiplex Targeted Sequencing Identifies Recurrently Mutated Genes in Autism Spectrum Disorders
O’Roak, B. J., Vives, L., Fu, W., Egertson, J. D., Stanaway, I. B., Phelps, I. G., Carvill, G., Kumar, A., Lee, C., Ankenman, K., et al. (2012) · Science · doi:10.1126/science.1227764 · Cited by 1,240 · see citing works
Rauch, A., Wieczorek, D., Graf, E., Wieland, T., Endele, S., Schwarzmayr, T., Albrecht, B., Bartholdi, D., Beygo, J., Di Donato, N., et al. (2012) · The Lancet · doi:10.1016/s0140-6736(12)61480-9 · Cited by 1,041 · see citing works
A de novo paradigm for mental retardation.
Vissers, L. E. L. M., de Ligt, J., Gilissen, C., Janssen, I., Steehouwer, M., de Vries, P., van Lier, B., Arts, P., Wieskamp, N., del Rosario, M., et al. (2010) · Nature Genetics · doi:10.1038/ng.712 · Cited by 852 · see citing works
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van der Made, C. I., Simons, A., Schuurs-Hoeijmakers, J., van den Heuvel, G., Mantere, T., Kersten, S., van Deuren, R. C., Steehouwer, M., van Reijmersdal, S. V., Jaeger, M., et al. (2020) · JAMA · doi:10.1001/jama.2020.13719 · Cited by 789 · see citing works
Self-citationCoe, B. P., Witherspoon, K., Rosenfeld, J. A., van Bon, B. W. M., Vulto-van Silfhout, A. T., Bosco, P., Friend, K. L., Baker, C., Buono, S., Vissers, L. E. L. M., et al. (2014) · Nature Genetics · doi:10.1038/ng.3092 · Cited by 720 · see citing works
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Self-citationA de novo convergence of autism genetics and molecular neuroscience
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De Novo Mutations in Moderate or Severe Intellectual Disability
Hamdan, F. F., Srour, M., Capo-Chichi, J.-M., Daoud, H., Nassif, C., Patry, L., Massicotte, C., Ambalavanan, A., Spiegelman, D., Diallo, O., et al. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004772 · Cited by 419 · see citing works
Exome sequencing and the genetic basis of complex traits
Kiezun, A., Garimella, K., Do, R., Stitziel, N. O., Neale, B. M., McLaren, P. J., Gupta, N., Sklar, P., Sullivan, P. F., Moran, J. L., et al. (2012) · Nature Genetics · doi:10.1038/ng.2303 · Cited by 372 · see citing works
Genetic and Epigenetic Networks in Intellectual Disabilities
van Bokhoven, H. (2011) · Annual Review of Genetics · doi:10.1146/annurev-genet-110410-132512 · Cited by 383 · see citing works
Genomics, Intellectual Disability, and Autism
Mefford, H. C., Batshaw, M. L., & Hoffman, E. P. (2012) · New England Journal of Medicine · doi:10.1056/nejmra1114194 · Cited by 329 · see citing works
Clonal diversity of recurrently mutated genes in myelodysplastic syndromes
Walter, M. J., Shen, D., Shao, J., Ding, L., White, B. S., Kandoth, C., Miller, C. A., Niu, B., McLellan, M. D., Dees, N. D., et al. (2013) · Leukemia · doi:10.1038/leu.2013.58 · Cited by 284 · see citing works
Prioritization of neurodevelopmental disease genes by discovery of new mutations
Hoischen, A., Krumm, N., & Eichler, E. E. (2014) · Nature Neuroscience · doi:10.1038/nn.3703 · Cited by 149 · see citing works
Self-citationRecurrent de novo mutations in neurodevelopmental disorders: properties and clinical implications
Wilfert, A. B., Sulovari, A., Turner, T. N., Coe, B. P., & Eichler, E. E. (2017) · Genome Medicine · doi:10.1186/s13073-017-0498-x · Cited by 144 · see citing works
Hunt, D., Leventer, R. J., Simons, C., Taft, R., Swoboda, K. J., Gawne-Cain, M., study, T. D., Magee, A. C., Turnpenny, P. D., & Baralle, D. (2014) · Journal of Medical Genetics · doi:10.1136/jmedgenet-2014-102798 · Cited by 104 · see citing works
Cnossen, W. R., te Morsche, R. H. M., Hoischen, A., Gilissen, C., Chrispijn, M., Venselaar, H., Mehdi, S., Bergmann, C., Veltman, J. A., & Drenth, J. P. H. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1309438111 · Cited by 90 · see citing works
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- Authors
- Hoischen, A., van Bon, B. W. M., Gilissen, C., Arts, P., van Lier, B., Steehouwer, M., de Vries, P., de Reuver, R., Wieskamp, N., Mortier, G., Devriendt, K., Amorim, M. Z., Revencu, N., Kidd, A., Barbosa, M., Turner, A., Smith, J., Oley, C., Henderson, A., Hayes, I. M., Thompson, E. M., Brunner, H. G., de Vries, B. B. A., & Veltman, J. A.
- Affiliations
- Radboud University Medical Center (NL)
- Antwerp University Hospital (BE)
- Unidade Local de Saúde de Coimbra (PT)
- Christchurch Hospital (NZ)
- Sydney Children's Hospital (AU)
- Children's Hospital at Westmead (AU)
- Birmingham Women's Hospital (GB)
- National Health Service (GB)
- South Australia Pathology (AU)
- Corresponding author
- Veltman, Joris A
- ORCID
- Venue
- Nature Genetics
- Published
- 2010-05-02
- Volume
- 42
- Issue
- 6
- Pages
- 483-485
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2097209446
- Cited by
- 489
- References
- 15
- Citations by year
- 2026: 3 · 2025: 14 · 2024: 30 · 2023: 15 · 2022: 12 · 2021: 11 · 2020: 11 · 2019: 18 · 2018: 24 · 2017: 32 · 2016: 22 · 2015: 36 · 2014: 53 · 2013: 68 · 2012: 65
- FWCI
- 37.37
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Digital Access to Libraries (Université catholique de Louvain (UCL), l'Université de Namur (UNamur) and the Université Saint-Louis (USL-B)) (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Lirias (submittedVersion)
- Radboud Repository (Radboud University) (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomic variations and chromosomal abnormalities
- Keywords
- Schinzel-Giedion syndrome, SETBP1, de novo mutations, intellectual disability, congenital malformations, facial dysmorphism, dominant negative effect, exome sequencing
- MeSH terms
- Abnormalities, Multiple, Base Sequence, Carrier Proteins, Face, Humans, Intellectual Disability, Molecular Sequence Data, Mutation, Nuclear Proteins, Syndrome
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