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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
Abstract
Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica are closely related Gram-negative beta-proteobacteria that colonize the respiratory tracts of mammals. B. pertussis is a strict human pathogen of recent evolutionary origin and is the primary etiologic agent of whooping cough. B. parapertussis can also cause whooping cough, and B. bronchiseptica causes chronic respiratory infections in a wide range of animals. We sequenced the genomes of B. bronchiseptica RB50 (5,338,400 bp; 5,007 predicted genes), B. parapertussis 12822 (4,773,551 bp; 4,404 genes) and B. pertussis Tohama I (4,086,186 bp; 3,816 genes). Our analysis indicates that B. parapertussis and B. pertussis are independent derivatives of B. bronchiseptica-like ancestors. During the evolution of these two host-restricted species there was large-scale gene loss and inactivation; host adaptation seems to be a consequence of loss, not gain, of function, and differences in virulence may be related to loss of regulatory or control functions.
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“Previous study on phylum Proteobacteria demonstrated that extensively rearranged genomes contain a high number of repeats among closely related bacteria.49”
From Whole genomic DNA sequencing and comparative genomic analysis of Arthrospira platensis: high genome plasticity and genetic diversity (2016) · cites this paper as [49]
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Cites
Escherichia coli and Salmonella :cellular and molecular biology
Neidhardt, F. C. (1996) · ASM Press eBooks · Cited by 8,197
Ashburner, M. (1989) · Cold Spring Harbor Laboratory eBooks · Cited by 6,756
The World Health Report 2002 - Reducing Risks, Promoting Healthy Life
Available, N. A. N. (2003) · Education for Health · doi:10.1080/1357628031000116808 · Cited by 6,078
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
Nei, M., & Gojobori, T. (1986) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040410 · Cited by 4,904
Artemis: sequence visualization and annotation
Rutherford, K. M., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M., & Barrell, B. (2000) · Bioinform. · doi:10.1093/bioinformatics/16.10.944 · Cited by 3,295
Self-citationType III Secretion Machines: Bacterial Devices for Protein Delivery into Host Cells
Galán, J. E., & Collmer, A. (1999) · Science · doi:10.1126/science.284.5418.1322 · Cited by 1,323
Genome sequence of Yersinia pestis, the causative agent of plague
Parkhill, J., Wren, B. W., Thomson, N. R., Titball, R. W., Holden, M. T. G., Prentice, M. B., Sebaihia, M., James, K., Churcher, C. M., Mungall, K. L., et al. (2001) · Nature · doi:10.1038/35097083 · Cited by 1,244
Self-citationComplete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491
Parkhill, J., Achtman, M., James, K., Bentley, S. D., Churcher, C. M., Klee, S. R., Morelli, G., Basham, D., Brown, D., Chillingworth, T., et al. (2000) · Nature · doi:10.1038/35006655 · Cited by 699
Self-citationMaurelli, A. T., Fernández, R. E., Bloch, C. A., Rode, C. K., & Fasano, A. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.7.3943 · Cited by 457
Virulence Functions of Autotransporter Proteins
Henderson, I. R., & Nataro, J. P. (2001) · Infection and Immunity · doi:10.1128/iai.69.3.1231-1243.2001 · Cited by 448
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Antommattei, F. M., & Weis, R. M. (2006) · The Enzymes · doi:10.1016/s1874-6047(06)80014-4 · Cited by 13
A curated genome-scale metabolic model of Bordetella pertussis metabolism
Fyson, N., King, J. D., Belcher, T., Preston, A., & Colijn, C. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005639 · Cited by 13
Self-citationComparison of different approaches for comparative genetic analysis using microarray hybridization
Pin, C., Reuter, M., Pearson, B. M., Friis, L. M., Overweg, K., Baranyi, J., & Wells, J. M. (2006) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-006-0536-x · Cited by 13
von Koenig, C. H. W., Riffelmann, M., & Coenye, T. (2011) · Wiley eBooks · doi:10.1128/9781555816728.ch43 · Cited by 13
Bacterial genome structural variation: prevalence, mechanisms, and consequences
Waters, E. V., Cameron, S. A., Langridge, G. C., & Preston, A. (2025) · Trends in Microbiology · doi:10.1016/j.tim.2025.04.004 · Cited by 12
Self-citationBouchez, V., Douché, T., Dazas, M., Delaplane, S., Matondo, M., Chamot‐Rooke, J., & Guiso, N. (2017) · Toxins · doi:10.3390/toxins9100304 · Cited by 12
Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland
Seth-Smith, H. M. B., Casanova, C., Sommerstein, R., Meinel, D. M., Abdelbary, M. M. H., Blanc, D., Droz, S., Führer, U., Lienhard, R., Lang, C., et al. (2019) · Emerging infectious diseases · doi:10.3201/eid2406.172119 · Cited by 12
Noguera, S. V., Jaramillo, K., Zabala, A., & Villacís, J. E. (2020) · Revista Argentina de Microbiología · doi:10.1016/j.ram.2020.07.001 · Cited by 12
Genomic landscapes of bacterial transposons and their applications in strain improvement
Wu, S., Tian, P., & Tan, T. (2022) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-022-12170-z · Cited by 12
IEIIS Meeting minireview: Bordetella evolution: lipid A and Toll-like receptor 4
MacArthur, I., Mann, P. B., Harvill, E. T., & Preston, A. (2007) · Journal of Endotoxin Research · doi:10.1177/0968051907082609 · Cited by 12
Self-citationThe Bordetella type III secretion system: its application to vaccine development
Abe, A., Nagamatsu, K., & Watanabe, M. (2008) · Microbiology and Immunology · doi:10.1111/j.1348-0421.2008.00028.x · Cited by 12
Barchinger, S. E., Zhang, X., Hester, S. E., Rodríguez, M. E., Harvill, E. T., & Ades, S. E. (2012) · BMC Microbiology · doi:10.1186/1471-2180-12-179 · Cited by 12
Worthington, Z. E. V., van Rooijen, N., & Carbonetti, N. H. (2011) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2011.00836.x · Cited by 12
Introducing Evolutionary Thinking For Medicine
Stearns, S. C., Nesse, R. M., & Haig, D. (2007) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199207466.003.0001 · Cited by 12
Slack, M. (2010) · Elsevier eBooks · doi:10.1016/b978-0-323-04579-7.00172-6 · Cited by 12
Brickman, T. J., & Armstrong, S. K. (2018) · Molecular Microbiology · doi:10.1111/mmi.13943 · Cited by 12
Genome Size Reversely Correlates With Host Plant Range in Helicoverpa Species
Zhang, S., Gu, S., Ni, X., & Li, X. (2019) · Frontiers in Physiology · doi:10.3389/fphys.2019.00029 · Cited by 12
Characterization of Bordetella bronchiseptica strains using phenotypic and genotypic markers
Friedman, L. E., Messina, M., Santoferrara, L. F., Santillán, M. A., Mangano, A. M., & Franco, M. A. (2006) · Veterinary Microbiology · doi:10.1016/j.vetmic.2006.06.005 · Cited by 12
Characterization of a new protective antigen of Streptococcus canis
Jian-de, Y., Liu, Y., Xu, J., & Li, B. (2010) · Veterinary Research Communications · doi:10.1007/s11259-010-9414-1 · Cited by 12
Fed-batch cultivation of Bordetella pertussis: Metabolism and Pertussis Toxin production
Thalen, M., Venema, M., Dekker, A., Berwald, L., van den IJssel, J., Zomer, B., Beuvery, C., Martens, D. E., & TRAMPER, J. (2006) · Biologicals · doi:10.1016/j.biologicals.2005.12.001 · Cited by 12
Hasan, M. R., Tan, R., Al‐Rawahi, G. N., Thomas, É., & Tilley, P. A. G. (2014) · Canadian Journal of Infectious Diseases and Medical Microbiology · doi:10.1155/2014/763128 · Cited by 12
Hfq modulates global protein pattern and stress response in Bordetella pertussis
Hayes, J. Á., Surmann, K., Lamberti, Y., Depke, M., Dhople, V. M., Blancá, B., Ruiz, E., Večerek, B., Schmidt, F., Völker, U., et al. (2019) · Journal of Proteomics · doi:10.1016/j.jprot.2019.103559 · Cited by 12
Wear, S. S., Sande, C., Ovchinnikova, O. G., Preston, A., & Whitfield, C. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.101486 · Cited by 11
Self-citationCui, X., Xu, X., Huang, P., Bao, G., & Liu, Y. (2022) · Pharmaceutics · doi:10.3390/pharmaceutics14071434 · Cited by 11
Badhai, J., & Das, S. K. (2023) · Journal of Applied Microbiology · doi:10.1093/jambio/lxad200 · Cited by 11
Unveiling the burden of pertussis
van Boven, M. (2004) · Trends in Microbiology · doi:10.1016/j.tim.2004.01.002 · Cited by 11
Evolution and Conservation of Bordetella Intracellular Survival in Eukaryotic Host Cells
Rivera, I., Linz, B., & Harvill, E. T. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.557819 · Cited by 11
Jing, X., Liu, H., Nie, Y., & Xu, Y. (2021) · Systems Microbiology and Biomanufacturing · doi:10.1007/s43393-021-00025-z · Cited by 11
Luu, L. D. W., Zhong, L., Kaur, S., Raftery, M. J., & Lan, R. (2021) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.660280 · Cited by 11
Moon, K., Sim, M., Tai, C., Yoo, K., Merzbacher, C., Yu, S., Kim, D. D., Lee, J., Förstner, K. U., Chen, Q., et al. (2021) · Microbiology Spectrum · doi:10.1128/spectrum.00044-21 · Cited by 11
Xu, S., Wang, X., Zhang, F., Jiang, Y., Zhang, Y.-T. Y., Cheng, M., Yan, X., Hong, Q., He, J., & Qiu, J. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00172-22 · Cited by 11
Oh, H., Shin, J., Ato, M., Ma, X., Williams, D. J., Han, K., Kim, Y. J., Kang, H., Jung, K., Hanada, K., et al. (2017) · Osong Public Health and Research Perspectives · doi:10.24171/j.phrp.2017.8.1.13 · Cited by 11
MacArthur, I., Belcher, T., King, J. D., Ramasamy, V., Alhammadi, M., & Preston, A. (2019) · Emerging Microbes & Infections · doi:10.1080/22221751.2019.1601502 · Cited by 11
Self-citationLuca, E. D., Álvarez‐Narváez, S., Maboni, G., Baptista, R. P., Nemeth, N. M., Niedringhaus, K. D., Ladner, J. T., Lorch, J. M., Koroleva, G., Lovett, S. P., et al. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.667356 · Cited by 11
Sukumar, N., Sloan, G. P., Conover, M. S., Love, C. F., Mattoo, S., Kock, N. D., & Deora, R. (2010) · Infection and Immunity · doi:10.1128/iai.01142-09 · Cited by 11
Recent progress, developments, and issues in comparative fungal genomics
Hsiang, T., & Baillie, D. L. (2004) · Canadian Journal of Plant Pathology · doi:10.1080/07060660409507108 · Cited by 11
Multilocus Sequence Typing of Pathogens
Pérez‐Losada, M., Porter, M. L., Viscidi, R. P., & Crandall, K. A. (2010) · Elsevier eBooks · doi:10.1016/b978-0-12-384890-1.00017-0 · Cited by 11
Human genetic variation of medical significance
Kídd, K. K., & Kidd, J. R. (2007) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199207466.003.0005 · Cited by 11
Plague, G. R., Boodram, K. S., Dougherty, K. M., Bregg, S., Gilbert, D. P., Bakshi, H., & da Costa, D. P. (2017) · Journal of Molecular Evolution · doi:10.1007/s00239-017-9797-5 · Cited by 11
Abrahams, J. S., Weigand, M. R., Ring, N., MacArthur, I., Etty, J., Peng, S., Williams, M. M., Bready, B., Catalano, A. P., Davis, J. R., et al. (2022) · Microbial Genomics · doi:10.1099/mgen.0.000761 · Cited by 10
Self-citationNatural History and Ecology of Interactions Between Bordetella Species and Amoeba
Ma, L., Linz, B., Caulfield, A. D., Dewan, K. K., Rivera, I., & Harvill, E. T. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.798317 · Cited by 10
Toxin-linked mobile genetic elements in major enteric bacterial pathogens
Panwar, S., Kumari, S., Verma, J., Bakshi, S., Narendrakumar, L., Paul, D., & Das, B. (2023) · Gut Microbiome · doi:10.1017/gmb.2023.2 · Cited by 10
Remesh, A. T., Alagarasu, K., Jadhav, S., Prabhakar, M., & Viswanathan, R. (2024) · Vaccines · doi:10.3390/vaccines12030253 · Cited by 10
Parisi, A., Nunez, O. G., López-Perea, N., & Calles, J. M. (2024) · Vaccine · doi:10.1016/j.vaccine.2024.03.028 · Cited by 10
Acid tolerance response of Bordetella bronchiseptica in avirulent phase
Fingermann, M., & Hozbor, D. F. (2015) · Microbiological Research · doi:10.1016/j.micres.2015.09.001 · Cited by 10
Survey and Rapid Detection of Bordetella pertussis in Clinical Samples Targeting the BP485 in China
Liu, W., Xu, Y., Dong, D., Li, H., Zhao, X., Li, L., Zhang, Y., Wei, X., Wang, X., Huang, S., et al. (2015) · Frontiers in Public Health · doi:10.3389/fpubh.2015.00039 · Cited by 10
Okada, K., Ogura, Y., Hayashi, T., Abe, A., Kuwae, A., Horiguchi, Y., & Abé, H. (2014) · Genome Announcements · doi:10.1128/genomea.00436-14 · Cited by 10
Complete genome sequence of a clinical Bordetella pertussis isolate from Brazil
Andrade, B. G. N., Marin, M. F. A., Cambuy, D. D., da Fonseca, E. L., Souza, N. F., & Vicente, A. C. P. (2014) · Memórias do Instituto Oswaldo Cruz · doi:10.1590/0074-0276140288 · Cited by 10
Stępniewska, K., Urbaniak, K., & Markowska‐Daniel, I. (2014) · Polish Journal of Veterinary Sciences · doi:10.2478/pjvs-2014-0009 · Cited by 10
Chow, S.-K., Arbefeville, S. S., Boyanton, B. L., Dault, E. M., Dunn, J. J., Ferrieri, P., Greene, W. H., Pence, M. A., Otiso, J., Richter, S. S., et al. (2020) · Journal of Clinical Microbiology · doi:10.1128/jcm.01041-20 · Cited by 10
Abe, A., Nishimura, R., Tanaka, N., Kurushima, J., & Kuwae, A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0135140 · Cited by 10
Loker, S. B., Temple, L. M., & Preston, A. (2011) · Infection and Immunity · doi:10.1128/iai.01169-10 · Cited by 10
Self-citationVaughan, T. E., Pratt, C. B., Sealey, K. L., Preston, A., Fry, N. K., & GORRINGE, A. R. (2014) · Microbiology · doi:10.1099/mic.0.079251-0 · Cited by 10
Self-citationGzyl, A., Augustynowicz, E., Mosiej, E., Zawadka, M., Gniadek, G., Nowaczek, A., & Slusarczyk, J. (2005) · Journal of Medical Microbiology · doi:10.1099/jmm.0.45690-0 · Cited by 10
McMahon, G., Ring, S. M., Smith, G. D., & Timpson, N. J. (2015) · Human Molecular Genetics · doi:10.1093/hmg/ddv293 · Cited by 12
Li, S., Liu, C., Liu, Y., Ma, Q., Wang, Y., & Wang, Y. (2020) · BMC Microbiology · doi:10.1186/s12866-020-01945-x · Cited by 10
Ghosh, W., Alam, M., Roy, C., Pyne, P., George, A., Chakraborty, R., Majumder, S., Agarwal, A., Chakraborty, S., Majumdar, S., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0064856 · Cited by 11
IS982 and kin: new insights into an old IS family
Fayad, N., Awad, M. K., & Mahillon, J. (2020) · Mobile DNA · doi:10.1186/s13100-020-00221-z · Cited by 9
Genomes in Motion: Gene Transfer as a Catalyst for Genome Change
Lawrence, J. G., & Hendrickson, H. L. (2008) · Cambridge University Press eBooks · doi:10.1017/cbo9780511541520.002 · Cited by 9
Lam, C., Octavia, S., Sintchenko, V., Gilbert, G. L., & Lan, R. (2014) · BMC Research Notes · doi:10.1186/1756-0500-7-727 · Cited by 9
Occurence of Bordetella bronchiseptica in domestic cats with upper respiratory tract infections
Garbal, M., Adaszek, Ł., Łyp, P., Frymus, J., Winiarczyk, M., & Winiarczyk, S. (2016) · Polish Journal of Veterinary Sciences · doi:10.1515/pjvs-2016-0043 · Cited by 9
Li, Y., Tang, M., Wang, G., Li, C., Chen, W., Luo, Y., Zeng, J., Hu, X., Zhou, Y., Gao, Y., et al. (2019) · PLoS ONE · doi:10.1371/journal.pone.0214686 · Cited by 9
Pertussis in Low and Medium Income Countries: A Pragmatic Approach
Guiso, N., & Taieb, F. (2019) · Advances in experimental medicine and biology · doi:10.1007/5584_2019_409 · Cited by 9
Comparative genomics ofBordetella pertussisand prediction of new vaccines and drug targets
Felice, A. G., Santos, L. N. Q., Kolossowski, I., Zen, F. L., Alves, L. G., Rodrigues, T. C. V., Prado, L. C. D. S., Jaiswal, A. K., Tiwari, S., Miranda, F. M., et al. (2021) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2021.1940279 · Cited by 9
Ifill, G., Blimkie, T. M., Lee, A. H., Mackie, G. A., Chen, Q., Stibitz, S., Hancock, R. E. W., & Fernandez, R. C. (2021) · mSphere · doi:10.1128/msphere.00650-21 · Cited by 9
DiVenere, A. M., Amengor, D., Silva, R. P., Goldsmith, J. A., McLellan, J. S., & Maynard, J. A. (2022) · mBio · doi:10.1128/mbio.01527-22 · Cited by 9
Interspecies Variations in Bordetella Catecholamine Receptor Gene Regulation and Function
Brickman, T. J., Suhadolc, R. J., & Armstrong, S. K. (2015) · Infection and Immunity · doi:10.1128/iai.00787-15 · Cited by 9
General metabolism of Laribacter hongkongensis: a genome-wide analysis
Curreem, S. O. T., Teng, J. L. L., Tse, H., Yuen, K., Lau, S. K. P., & Woo, P. C. Y. (2011) · Cell & Bioscience · doi:10.1186/2045-3701-1-16 · Cited by 9
Performance of Bordetella pertussis IS481 real‐time PCR in a vaccine trial setting
Gullsby, K., Hallander, H. O., & Bondeson, K. (2007) · Apmis · doi:10.1111/j.1600-0463.2007.00774.x · Cited by 9
Pertussis Diagnosis in the 21st Century: Progress and Pitfalls, Part I
Leber, A. L., Salamon, D. P., & Prince, H. E. (2011) · Clinical Microbiology Newsletter · doi:10.1016/j.clinmicnews.2011.07.001 · Cited by 9
Donato, G. M., Hsia, H.-L. J., Green, C. S., & Hewlett, E. L. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.22.7579-7588.2005 · Cited by 9
Host Specificity of Ovine Bordetella parapertussis and the Role of Complement
Hester, S. E., Goodfield, L. L., Park, J., Feaga, H. A., Ivanov, Y. V., Bendor, L., Taylor, D. L., & Harvill, E. T. (2015) · PLoS ONE · doi:10.1371/journal.pone.0130964 · Cited by 9
Chen, Q., Lee, G. S., Craig, C., Ng, V. H., Carlson, P. E., Hinton, D. M., & Stibitz, S. (2018) · Journal of Bacteriology · doi:10.1128/jb.00175-18 · Cited by 9
Simo, G., Kanté, S. T., Madinga, J. N., Kame‐Ngasse, G. I., Farikou, O., Ilombe, G., Geiger, A., Lutumba, P. T., & Njiokou, F. (2019) · Parasite · doi:10.1051/parasite/2019005 · Cited by 9
A Molecular Perspective of Microbial Pathogenicity
Relman, D. A., & Falkow, S. (2010) · Elsevier eBooks · doi:10.1016/b978-0-443-06839-3.00001-1 · Cited by 9
Computational Resources in Infectious Disease: Limitations and Challenges
Berglund, E., Nystedt, B., & Andersson, S. G. E. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000481 · Cited by 9
McKay, L. S., Spandrio, A. R., Johnson, R. M., Sobran, M. A., Marlatt, S. A., Mote, K. B., Dedloff, M. R., Nash, Z. M., Julio, S. M., & Cotter, P. A. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1012084 · Cited by 8
First, N. J., Pedreira-Lopez, J., San-Silvestre, M. R. F., Parrish, K. M., Lu, X.-H., & Gestal, M. C. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1111502 · Cited by 8
Luu, L. D. W., Rafique, R., Payne, M., Octavia, S., Robson, J. R., Sintchenko, V., & Lan, R. (2024) · Journal of Clinical Microbiology · doi:10.1128/jcm.01178-24 · Cited by 8
Register, K. B., Davison, N. J., Foster, G., Ivanov, Y. V., & Harvill, E. T. (2015) · Microbiology · doi:10.1099/mic.0.000035 · Cited by 8
Medkova, A. Y., Аlyapkina, Y. S., Николаевна, С. Л., Amelina, I. P., Alekseev, Y. I., Bokovoĭ, A. G., & Иванович, К. Г. (2010) · Molecular Genetics Microbiology and Virology · doi:10.3103/s0891416810040051 · Cited by 8
Single Amino Acid Polymorphisms of Pertussis Toxin Subunit S2 (PtxB) Affect Protein Function
Millen, S. H., Watanabe, M., Komatsu, E., Yamaguchi, F., Nagasawa, Y., Suzuki, E., Monaco, H., & Weiss, A. A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0137379 · Cited by 8
Complete Genome Sequence of Bordetella bronchiseptica Strain KM22
Nicholson, T. L., Bayles, D. O., & Shore, S. M. (2020) · Microbiology Resource Announcements · doi:10.1128/mra.01207-19 · Cited by 8
Badhai, J., & Das, S. K. (2021) · FEMS Microbiology Letters · doi:10.1093/femsle/fnab035 · Cited by 8
Probing Immune-Mediated Clearance of Acute Middle Ear Infection in Mice
Dewan, K. K., Sedney, C. J., Caulfield, A. D., Su, Y., Ma, L., Blas‐Machado, U., & Harvill, E. T. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2021.815627 · Cited by 8
Modeling the catarrhal stage of Bordetella pertussis upper respiratory tract infections in mice
Soumana, I. H., Dewan, K. K., Linz, B., Rivera, I., Ma, L., Howard, L. K., Caulfield, A. D., Sedney, C. J., Blas‐Machado, U., Šebo, P., et al. (2022) · Disease Models & Mechanisms · doi:10.1242/dmm.049266 · Cited by 8
Díaz-Maldonado, H., Gómez, M. J., Moreno‐Paz, M., Martín‐Úriz, P. S., Amils, R., Parro, V., & de Saro, F. J. L. (2015) · Scientific Reports · doi:10.1038/srep13329 · Cited by 8
Molecular typing ofBordetella parapertussisisolates circulating in Pakistan
Bokhari, H., Said, F., Syed, M. A., Mughal, A. A., Kazi, Y. F., Kallonen, T., He, Q., King, A. J., Heuvelman, K. J., & Mooi, F. R. (2011) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2011.00861.x · Cited by 8
Kenicer, J., Hardie, A., Hamilton, F., Gadsby, N. J., & Templeton, K. E. (2014) · Journal of Clinical Microbiology · doi:10.1128/jcm.00212-14 · Cited by 8
Streefland, M., van de Waterbeemd, B., Kint, J., van der Pol, L. A., Beuvery, E. C., TRAMPER, J., & Martens, D. E. (2008) · Biotechnology and Bioengineering · doi:10.1002/bit.22030 · Cited by 8
Mruk, I., & Kaczorowski, T. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00119-07 · Cited by 8
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Metadata
- Authors
- Parkhill, J., Sebaihia, M., Preston, A., Murphy, L. D., Thomson, N., Harris, D. E., Holden, M. T. G., Churcher, C. M., Bentley, S. D., Mungall, K. L., Cerdeño-Tárraga, A. M., Temple, L., James, K., Harris, B., Quail, M. A., Achtman, M., Atkin, R., Baker, S., Basham, D., Bason, N., Cherevach, I., Chillingworth, T., Collins, M., Cronin, A., Davis, P., Doggett, J., Feltwell, T., Goble, A., Hamlin, N., Hauser, H., Holroyd, S., Jagels, K., Leather, S., Moule, S., Norberczak, H., O'Neil, S., Ormond, D., Price, C., Rabbinowitsch, E., Rutter, S., Sanders, M., Saunders, D., Seeger, K., Sharp, S., Simmonds, M., Skelton, J., Squares, R., Squares, S., Stevens, K., Unwin, L., Whitehead, S., Barrell, B. G., & Maskell, D. J.
- Affiliations
- Wellcome Sanger Institute (GB)
- University of Cambridge (GB)
- Drew University (US)
- Max Planck Institute for Infection Biology (DE)
- Corresponding author
- Parkhill, Julian
- Maskell, Duncan J
- ORCID
- Venue
- Nature Genetics
- Published
- 2003-08-10
- Volume
- 35
- Issue
- 1
- Pages
- 32-40
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2155534524
- Cited by
- 1,037
- References
- 53
- Citations by year
- 2026: 24 · 2025: 36 · 2024: 26 · 2023: 28 · 2022: 31 · 2021: 40 · 2020: 29 · 2019: 45 · 2018: 30 · 2017: 40 · 2016: 32 · 2015: 61 · 2014: 61 · 2013: 37 · 2012: 42
- FWCI
- 47.55
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Bacterial Infections and Vaccines
- Life Sciences › Immunology and Microbiology › Microbiology › Microbial infections and disease research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- Bordetella pertussis, Bordetella parapertussis, Bordetella bronchiseptica, genome sequencing, comparative genomics, bacterial evolution, gene loss, host adaptation, virulence, Betaproteobacteria, respiratory pathogens
- MeSH terms
- Base Sequence, Bordetella, Bordetella pertussis, DNA, Bacterial, Molecular Sequence Data, Species Specificity, Genome, Bacterial, Bordetella bronchiseptica, Sequence Analysis, DNA
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