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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
Abstract
Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica are closely related Gram-negative beta-proteobacteria that colonize the respiratory tracts of mammals. B. pertussis is a strict human pathogen of recent evolutionary origin and is the primary etiologic agent of whooping cough. B. parapertussis can also cause whooping cough, and B. bronchiseptica causes chronic respiratory infections in a wide range of animals. We sequenced the genomes of B. bronchiseptica RB50 (5,338,400 bp; 5,007 predicted genes), B. parapertussis 12822 (4,773,551 bp; 4,404 genes) and B. pertussis Tohama I (4,086,186 bp; 3,816 genes). Our analysis indicates that B. parapertussis and B. pertussis are independent derivatives of B. bronchiseptica-like ancestors. During the evolution of these two host-restricted species there was large-scale gene loss and inactivation; host adaptation seems to be a consequence of loss, not gain, of function, and differences in virulence may be related to loss of regulatory or control functions.
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“Previous study on phylum Proteobacteria demonstrated that extensively rearranged genomes contain a high number of repeats among closely related bacteria.49”
From Whole genomic DNA sequencing and comparative genomic analysis of Arthrospira platensis: high genome plasticity and genetic diversity (2016) · cites this paper as [49]
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Metadata
- Authors
- Parkhill, J., Sebaihia, M., Preston, A., Murphy, L. D., Thomson, N., Harris, D. E., Holden, M. T. G., Churcher, C. M., Bentley, S. D., Mungall, K. L., Cerdeño-Tárraga, A. M., Temple, L., James, K., Harris, B., Quail, M. A., Achtman, M., Atkin, R., Baker, S., Basham, D., Bason, N., Cherevach, I., Chillingworth, T., Collins, M., Cronin, A., Davis, P., Doggett, J., Feltwell, T., Goble, A., Hamlin, N., Hauser, H., Holroyd, S., Jagels, K., Leather, S., Moule, S., Norberczak, H., O'Neil, S., Ormond, D., Price, C., Rabbinowitsch, E., Rutter, S., Sanders, M., Saunders, D., Seeger, K., Sharp, S., Simmonds, M., Skelton, J., Squares, R., Squares, S., Stevens, K., Unwin, L., Whitehead, S., Barrell, B. G., & Maskell, D. J.
- Affiliations
- Wellcome Sanger Institute (GB)
- University of Cambridge (GB)
- Drew University (US)
- Max Planck Institute for Infection Biology (DE)
- Corresponding author
- Parkhill, Julian
- Maskell, Duncan J
- ORCID
- Venue
- Nature Genetics
- Published
- 2003-08-10
- Volume
- 35
- Issue
- 1
- Pages
- 32-40
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2155534524
- Cited by
- 1,037
- References
- 53
- Citations by year
- 2026: 24 · 2025: 36 · 2024: 26 · 2023: 28 · 2022: 31 · 2021: 40 · 2020: 29 · 2019: 45 · 2018: 30 · 2017: 40 · 2016: 32 · 2015: 61 · 2014: 61 · 2013: 37 · 2012: 42
- FWCI
- 47.55
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Bacterial Infections and Vaccines
- Life Sciences › Immunology and Microbiology › Microbiology › Microbial infections and disease research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- Bordetella pertussis, Bordetella parapertussis, Bordetella bronchiseptica, genome sequencing, comparative genomics, bacterial evolution, gene loss, host adaptation, virulence, Betaproteobacteria, respiratory pathogens
- MeSH terms
- Base Sequence, Bordetella, Bordetella pertussis, DNA, Bacterial, Molecular Sequence Data, Species Specificity, Genome, Bacterial, Bordetella bronchiseptica, Sequence Analysis, DNA
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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