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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
Abstract
Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica are closely related Gram-negative beta-proteobacteria that colonize the respiratory tracts of mammals. B. pertussis is a strict human pathogen of recent evolutionary origin and is the primary etiologic agent of whooping cough. B. parapertussis can also cause whooping cough, and B. bronchiseptica causes chronic respiratory infections in a wide range of animals. We sequenced the genomes of B. bronchiseptica RB50 (5,338,400 bp; 5,007 predicted genes), B. parapertussis 12822 (4,773,551 bp; 4,404 genes) and B. pertussis Tohama I (4,086,186 bp; 3,816 genes). Our analysis indicates that B. parapertussis and B. pertussis are independent derivatives of B. bronchiseptica-like ancestors. During the evolution of these two host-restricted species there was large-scale gene loss and inactivation; host adaptation seems to be a consequence of loss, not gain, of function, and differences in virulence may be related to loss of regulatory or control functions.
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“Previous study on phylum Proteobacteria demonstrated that extensively rearranged genomes contain a high number of repeats among closely related bacteria.49”
From Whole genomic DNA sequencing and comparative genomic analysis of Arthrospira platensis: high genome plasticity and genetic diversity (2016) · cites this paper as [49]
Citations
Cites
Escherichia coli and Salmonella :cellular and molecular biology
Neidhardt, F. C. (1996) · ASM Press eBooks · Cited by 8,197
Ashburner, M. (1989) · Cold Spring Harbor Laboratory eBooks · Cited by 6,756
The World Health Report 2002 - Reducing Risks, Promoting Healthy Life
Available, N. A. N. (2003) · Education for Health · doi:10.1080/1357628031000116808 · Cited by 6,078
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
Nei, M., & Gojobori, T. (1986) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040410 · Cited by 4,904
Artemis: sequence visualization and annotation
Rutherford, K. M., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M., & Barrell, B. (2000) · Bioinform. · doi:10.1093/bioinformatics/16.10.944 · Cited by 3,295
Self-citationType III Secretion Machines: Bacterial Devices for Protein Delivery into Host Cells
Galán, J. E., & Collmer, A. (1999) · Science · doi:10.1126/science.284.5418.1322 · Cited by 1,323
Genome sequence of Yersinia pestis, the causative agent of plague
Parkhill, J., Wren, B. W., Thomson, N. R., Titball, R. W., Holden, M. T. G., Prentice, M. B., Sebaihia, M., James, K., Churcher, C. M., Mungall, K. L., et al. (2001) · Nature · doi:10.1038/35097083 · Cited by 1,244
Self-citationComplete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491
Parkhill, J., Achtman, M., James, K., Bentley, S. D., Churcher, C. M., Klee, S. R., Morelli, G., Basham, D., Brown, D., Chillingworth, T., et al. (2000) · Nature · doi:10.1038/35006655 · Cited by 699
Self-citationMaurelli, A. T., Fernández, R. E., Bloch, C. A., Rode, C. K., & Fasano, A. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.7.3943 · Cited by 457
Virulence Functions of Autotransporter Proteins
Henderson, I. R., & Nataro, J. P. (2001) · Infection and Immunity · doi:10.1128/iai.69.3.1231-1243.2001 · Cited by 448
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Genomic insights that advance the species definition for prokaryotes
Konstantinidis, K. T., & Tiedje, J. M. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409727102 · Cited by 2,124
Aminoglycoside modifying enzymes
Ramirez, M. S., & Tolmasky, M. E. (2010) · Drug Resistance Updates · doi:10.1016/j.drup.2010.08.003 · Cited by 1,504
Mattoo, S., & Cherry, J. D. (2005) · Clinical Microbiology Reviews · doi:10.1128/cmr.18.2.326-382.2005 · Cited by 1,134
Invasive non-typhoidal salmonella disease: an emerging and neglected tropical disease in Africa
Feasey, N., Dougan, G., Kingsley, R. A., Heyderman, R. S., & Gordon, M. A. (2012) · The Lancet · doi:10.1016/s0140-6736(11)61752-2 · Cited by 1,049
Horizontal gene transfer and adaptive evolution in bacteria.
Arnold, B. J., Huang, I.-T., & Hanage, W. P. (2022) · Nature Reviews Microbiology · doi:10.1038/s41579-021-00650-4 · Cited by 869
Wu, M., Sun, L. V., Vamathevan, J., Riegler, M., Deboy, R., Brownlie, J. C., McGraw, E. A., Martin, W., Esser, C., Ahmadinejad, N., et al. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020069 · Cited by 851
“The rearrangements in Wolbachia likely correspond with the introduction and massive expansion of the repeat element families that could serve as sites for intragenomic recombination, as has been shown to occur for some other bacterial species (Parkhill et al. 2003).”
BackgroundType V Protein Secretion Pathway: the Autotransporter Story
Henderson, I. R., Navarro‐García, F., Desvaux, M., Fernandez, R. C., & Ala’Aldeen, D. A. A. (2004) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.68.4.692-744.2004 · Cited by 873
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii
Fournier, P., Vallenet, D., Barbe, V., Audic, S., Ogata, H., Poirel, L., Richet, H., Robert, C., Mangenot, S., Abergel, C., et al. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020007 · Cited by 809
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei
Holden, M. T. G., Titball, R. W., Peacock, S. J., Cerdeño-Tárraga, A. M., Atkins, T. P., Crossman, L. C., Pitt, T. L., Churcher, C. M., Mungall, K., Bentley, S. D., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0403302101 · Cited by 758
Self-citationBacterial insertion sequences: their genomic impact and diversity
Siguier, P., Gourbeyre, E., & Chandler, M. (2014) · FEMS Microbiology Reviews · doi:10.1111/1574-6976.12067 · Cited by 773
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
Maury, M. M., Tsai, Y.-H., Charlier, C., Touchon, M., Chenal‐Francisque, V., Leclercq, A., Criscuolo, A., Gaultier, C., Roussel, S., Brisabois, A., et al. (2016) · Nature Genetics · doi:10.1038/ng.3501 · Cited by 699
Stinear, T. P., Seemann, T., Harrison, P. F., Jenkin, G. A., Davies, J. K., Johnson, P. D. R., Abdellah, Z., Arrowsmith, C., Chillingworth, T., Churcher, C., et al. (2008) · Genome Research · doi:10.1101/gr.075069.107 · Cited by 570
Self-citationBarrios, A. F. G., Zuo, R., Hashimoto, Y., Li, Y., Bentley, W. E., & Wood, T. K. (2005) · Journal of Bacteriology · doi:10.1128/jb.188.1.305-316.2006 · Cited by 545
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
Holt, K. E., Parkhill, J., Mazzoni, C. J., Roumagnac, P., Weill, F., Goodhead, I., Rance, R., Baker, S. G., Maskell, D. J., Wain, J. R., et al. (2008) · Nature Genetics · doi:10.1038/ng.195 · Cited by 498
Self-citationThe impact of insertion sequences on bacterial genome plasticity and adaptability
Vandecraen, J., Chandler, M., Aertsen, A., & Houdt, R. V. (2017) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2017.1303661 · Cited by 450
Qian, W., Jia, Y., Ren, S., He, Y.-Q., Feng, J., Lu, L.-F., Sun, Q., Ying, G., Tang, D., Tang, H., et al. (2005) · Genome Research · doi:10.1101/gr.3378705 · Cited by 412
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens
Silby, M. W., Cerdeño-Tárraga, A. M., Vernikos, G. S., Giddens, S. R., Jackson, R. W., Preston, G. M., Zhang, X., Moon, C. D., Gehrig, S. M., Godfrey, S. A. C., et al. (2009) · Genome biology · doi:10.1186/gb-2009-10-5-r51 · Cited by 408
Self-citationComparative genomic and phylogeographic analysis of Mycobacterium leprae
Monot, M., Honoré, N., Garnier, T., Zidane, N., Sherafi, D., Paniz‐Mondolfi, A., Matsuoka, M., Taylor, G. M., Donoghue, H. D., Bouwman, A., et al. (2009) · Nature Genetics · doi:10.1038/ng.477 · Cited by 412
Stinear, T. P., Seemann, T., Pidot, S. J., Frigui, W., Reysset, G., Garnier, T., Meurice, G., Simon, D., Bouchier, C., Ma, L., et al. (2007) · Genome Research · doi:10.1101/gr.5942807 · Cited by 392
Self-citationMcClelland, M., Sanderson, K. E., Clifton, S. W., Latreille, P., Porwollik, S., Sabo, A., Meyer, R., Bieri, T., Ozersky, P., McLellan, M., et al. (2004) · Nature Genetics · doi:10.1038/ng1470 · Cited by 391
The Repertoire of ICE in Prokaryotes Underscores the Unity, Diversity, and Ubiquity of Conjugation
Guglielmini, J., Quintais, L. T., Garcillán-Barcia, M. P., de la Cruz, F., & Rocha, E. P. C. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002222 · Cited by 402
Bordetella pertussis pathogenesis: current and future challenges
Melvin, J. A., Scheller, E. V., Miller, J. F., & Cotter, P. A. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3235 · Cited by 362
Genomic changes following host restriction in bacteria
Moran, N. A., & Plague, G. R. (2004) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2004.09.003 · Cited by 352
Bordetella pertussisStrains with Increased Toxin Production Associated with Pertussis Resurgence
Mooi, F. R., van Loo, I. H. M., van Gent, M., He, Q., Bart, M. J., Heuvelman, K. J., de Greeff, S. C., Diavatopoulos, D. A., Teunis, P. F. M., Nagelkerke, N. J. D., et al. (2009) · Emerging infectious diseases · doi:10.3201/eid1508.081511 · Cited by 351
Diversity of endotoxin and its impact on pathogenesis
Trent, M. S., Stead, C. M., Tran, A. X., & Hankins, J. V. (2006) · Journal of Endotoxin Research · doi:10.1177/09680519060120040201 · Cited by 335
Evolution of the Chaperone/Usher Assembly Pathway: Fimbrial Classification Goes Greek
Nuccio, S., & Bäumler, A. J. (2007) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00014-07 · Cited by 353
Takeuchi, F., Watanabe, S., Baba, T., Yuzawa, H., Ito, T., Morimoto, Y., Kuroda, M., Cui, L., Takahashi, M., Ankai, A., et al. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.21.7292-7308.2005 · Cited by 331
Challis, G. L. (2005) · ChemBioChem · doi:10.1002/cbic.200400283 · Cited by 323
The organization of the bacterial genome.
Rocha, E. (2008) · Annual Review of Genetics · doi:10.1146/annurev.genet.42.110807.091653 · Cited by 337
Evolution in Health and Disease
(2007) · doi:10.1093/acprof:oso/9780199207466.001.0001 · Cited by 323
Varani, A. M., Siguier, P., Gourbeyre, E., Charneau, V., & Chandler, M. (2011) · Genome biology · doi:10.1186/gb-2011-12-3-r30 · Cited by 318
Comparative genomic structure of prokaryotes.
Bentley, S., & Parkhill, J. (2004) · Annual Review of Genetics · doi:10.1146/annurev.genet.38.072902.094318 · Cited by 352
Self-citationThe Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
Frese, S. A., Benson, A. K., Tannock, G. W., Loach, D. M., Kim, J., Zhang, M., Oh, P. L., Heng, N. C. K., Patil, P. B., Juge, N., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1001314 · Cited by 312
Polyketide synthases and nonribosomal peptide synthetases: the emerging view from bacterial genomics
Donadio, S., Monciardini, P., & Sosio, M. (2007) · Natural Product Reports · doi:10.1039/b514050c · Cited by 318
Bart, M. J., Harris, S. R., Advani, A., Arakawa, Y., Bottero, D., Bouchez, V., Cassiday, P. K., Chiang, C., Dalby, T., Fry, N. K., et al. (2014) · mBio · doi:10.1128/mbio.01074-14 · Cited by 314
Self-citationGilmore, M. S., Lebreton, F., & van Schaik, W. (2013) · Current Opinion in Microbiology · doi:10.1016/j.mib.2013.01.006 · Cited by 301
He, S., Hickman, A. B., Varani, A. M., Siguier, P., Chandler, M., Dekker, J. P., & Dyda, F. (2015) · mBio · doi:10.1128/mbio.00762-15 · Cited by 298
Diavatopoulos, D. A., Cummings, C. A., Schouls, L. M., Brinig, M. M., Relman, D. A., & Mooi, F. R. (2005) · PLoS Pathogens · doi:10.1371/journal.ppat.0010045 · Cited by 299
Holden, M. T. G., Heather, Z., Paillot, R., Steward, K. F., Webb, K., Ainslie, F., Jourdan, T., Bason, N. C., Holroyd, N. E., Mungall, K., et al. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000346 · Cited by 265
Self-citationNeave, M. J., Michell, C., Apprill, A. M., & Voolstra, C. R. (2017) · Scientific Reports · doi:10.1038/srep40579 · Cited by 278
Rohmer, L., Fong, C. T., Abmayr, S., Wasnick, M., Freeman, T. J. L., Radey, M. C., Guina, T., Svensson, K., Hayden, H. S., Jacobs, M., et al. (2007) · Genome biology · doi:10.1186/gb-2007-8-6-r102 · Cited by 269
Insertion sequences in prokaryotic genomes
Siguier, P., Filée, J., & Chandler, M. (2006) · Current Opinion in Microbiology · doi:10.1016/j.mib.2006.08.005 · Cited by 259
Recent developments in pertussis
Crowcroft, N. S., & Pebody, R. G. (2006) · The Lancet · doi:10.1016/s0140-6736(06)68848-x · Cited by 257
Everyman's Guide to Bacterial Insertion Sequences
Siguier, P., Gourbeyre, E., Varani, A. M., Ton‐Hoang, B., & Chandler, M. (2015) · Microbiology Spectrum · doi:10.1128/microbiolspec.mdna3-0030-2014 · Cited by 256
The struggle for life of the genome's selfish architects
Hua‐Van, A., Rouzic, A. L., Boutin, T., Filée, J., & Capy, P. (2011) · Biology Direct · doi:10.1186/1745-6150-6-19 · Cited by 264
Bertalan, M., Albano, R. M., de Pádua, V. L. M., Rouws, L. F. M., Rojas, C. A., Hemerly, A. S., Teixeira, K. R. D. S., Schwab, S., Simões‐Araújo, J. L., de Oliveira, A. L. M., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-450 · Cited by 249
Towards a prokaryotic genomic taxonomy.
Coenye, T., Gevers, D., de Peer, Y. V., Vandamme, P., & Swings, J. (2005) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2004.11.004 · Cited by 212
Alsmark, C. M., Frank, A. C., Karlberg, E. O., Legault, B.-A., Ardell, D. H., Canbäck, B., Eriksson, A.-S., Näslund, A. K., Handley, S. A., Huvet, M., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0305659101 · Cited by 242
Causes of Insertion Sequences Abundance in Prokaryotic Genomes
Touchon, M., & Rocha, E. P. C. (2007) · Molecular Biology and Evolution · doi:10.1093/molbev/msm014 · Cited by 241
Patterns of genome evolution that have accompanied host adaptation in Salmonella
Langridge, G. C., Fookes, M. C., Connor, T. R., Feltwell, T., Feasey, N., Parsons, B. N., Seth-Smith, H. M. B., Barquist, L., Stedman, A., Humphrey, T. J., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1416707112 · Cited by 245
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Mendoza, S. N., Olivier, B. G., Molenaar, D., & Teusink, B. (2019) · Genome biology · doi:10.1186/s13059-019-1769-1 · Cited by 245
Green, N. M., Zhang, S., Porcella, S. F., Nagiec, M. J., Barbian, K., Beres, S. B., Lefebvre, R. B., & Musser, J. M. (2005) · The Journal of Infectious Diseases · doi:10.1086/430618 · Cited by 229
Protein engineering of formate dehydrogenase
Tishkov, V. I., & Popov, V. O. (2006) · Biomolecular Engineering · doi:10.1016/j.bioeng.2006.02.003 · Cited by 227
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Chain, P., Comerci, D. J., Tolmasky, M. E., Larimer, F. W., Malfatti, S., Vergez, L. M., Agüero, F., Land, M., Ugalde, R. A., & García, E. G. (2005) · Infection and Immunity · doi:10.1128/iai.73.12.8353-8361.2005 · Cited by 224
Lindsay, J. A., & Holden, M. T. G. (2006) · Functional & Integrative Genomics · doi:10.1007/s10142-005-0019-7 · Cited by 228
Self-citationCatalytic mechanism and application of formate dehydrogenase
Tishkov, V. I., & Popov, V. O. (2004) · Biochemistry (Moscow) · doi:10.1007/pl00021765 · Cited by 218
Leavis, H. L., Willems, R. J. L., van Wamel, W. J. B., Schuren, F. H. J., Caspers, M. P. M., & Bonten, M. J. M. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030007 · Cited by 220
Bhaya, D., Grossman, A. R., Steunou, A., Khuri, N., Cohan, F. M., Hamamura, N., Melendrez, M. C., Bateson, M. M., Ward, D. M., & Heidelberg, J. F. (2007) · The ISME Journal · doi:10.1038/ismej.2007.46 · Cited by 210
Junker, M., Schuster, C. C., McDonnell, A. V., Sorg, K. A., Finn, M. C., Berger, B., & Clark, P. L. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507923103 · Cited by 208
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Callanan, M., Kaleta, P., O'Callaghan, J., O'Sullivan, O., Jordan, K., McAuliffe, O., Sangrador-Vegas, A., Slattery, L., Fitzgerald, G. F., Beresford, T., et al. (2008) · Journal of Bacteriology · doi:10.1128/jb.01295-07 · Cited by 204
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Bordenstein, S. R. (2004) · Molecular Biology and Evolution · doi:10.1093/molbev/msh211 · Cited by 205
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Demangel, C., Stinear, T. P., & Cole, S. T. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2077 · Cited by 197
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Burke, G., & Moran, N. (2011) · Genome Biology and Evolution · doi:10.1093/gbe/evr002 · Cited by 201
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Oakeson, K., Gil, R., Clayton, A. L., Dunn, D., von Niederhausern, A. V., Hamil, C., Aoyagi, A., Duval, B., Baca, A., Silva, F. J., et al. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evt210 · Cited by 203
Holt, K. E., Thomson, N. R., Wain, J. R., Langridge, G. C., Hasan, R. S., Bhutta, Z. A., Quail, M. A., Norbertczak, H., Walker, D., Simmonds, M., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-36 · Cited by 193
Self-citationMultilocus sequence typing – what is resolved?
Cooper, J. E., & Feil, E. J. (2004) · Trends in Microbiology · doi:10.1016/j.tim.2004.06.003 · Cited by 186
Tatti, K. M., Sparks, K. N., Boney, K. O., & Tondella, M. L. (2011) · Journal of Clinical Microbiology · doi:10.1128/jcm.00601-11 · Cited by 184
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Binnewies, T. T., Motro, Y., Hallin, P. F., Lund, O., Dunn, D., La, T., Hampson, D. J., Bellgard, M., Wassenaar, T. M., & Ussery, D. W. (2006) · Functional & Integrative Genomics · doi:10.1007/s10142-006-0027-2 · Cited by 184
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Wick, R. R., Judd, L. M., & Holt, K. E. (2023) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1010905 · Cited by 192
Gilmour, M. W., Thomson, N. R., Sanders, M. J., Parkhill, J., & Taylor, D. E. (2004) · Plasmid · doi:10.1016/j.plasmid.2004.06.006 · Cited by 178
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Lam, C., Octavia, S., Ricafort, L., Sintchenko, V., Gilbert, G. L., Wood, N., McIntyre, P. B., Marshall, H. S., Guiso, N., Keil, A. D., et al. (2014) · Emerging infectious diseases · doi:10.3201/eid2004.131478 · Cited by 177
Eppinger, M., Baar, C., Linz, B., Raddatz, G., Lanz, C., Keller, H., Morelli, G., Gressmann, H., Achtman, M., & Schuster, S. C. (2005) · PLoS Genetics · doi:10.1371/journal.pgen.0020120 · Cited by 180
Self-citationBouchez, V., Brun, D., Cantinelli, T., Doré, G. R. G., Njamkepo, E., & Guiso, N. (2009) · Vaccine · doi:10.1016/j.vaccine.2009.07.074 · Cited by 173
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Treangen, T. J., Abraham, A., Touchon, M., & Rocha, E. P. C. (2009) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2009.00169.x · Cited by 182
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Doig, K., Holt, K. E., Fyfe, J., Lavender, C. J., Eddyani, M., Portaels, F., Yeboah‐Manu, D., Pluschke, G., Seemann, T., & Stinear, T. P. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-258 · Cited by 171
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Metadata
- Authors
- Parkhill, J., Sebaihia, M., Preston, A., Murphy, L. D., Thomson, N., Harris, D. E., Holden, M. T. G., Churcher, C. M., Bentley, S. D., Mungall, K. L., Cerdeño-Tárraga, A. M., Temple, L., James, K., Harris, B., Quail, M. A., Achtman, M., Atkin, R., Baker, S., Basham, D., Bason, N., Cherevach, I., Chillingworth, T., Collins, M., Cronin, A., Davis, P., Doggett, J., Feltwell, T., Goble, A., Hamlin, N., Hauser, H., Holroyd, S., Jagels, K., Leather, S., Moule, S., Norberczak, H., O'Neil, S., Ormond, D., Price, C., Rabbinowitsch, E., Rutter, S., Sanders, M., Saunders, D., Seeger, K., Sharp, S., Simmonds, M., Skelton, J., Squares, R., Squares, S., Stevens, K., Unwin, L., Whitehead, S., Barrell, B. G., & Maskell, D. J.
- Affiliations
- Wellcome Sanger Institute (GB)
- University of Cambridge (GB)
- Drew University (US)
- Max Planck Institute for Infection Biology (DE)
- Corresponding author
- Parkhill, Julian
- Maskell, Duncan J
- ORCID
- Venue
- Nature Genetics
- Published
- 2003-08-10
- Volume
- 35
- Issue
- 1
- Pages
- 32-40
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2155534524
- Cited by
- 1,037
- References
- 53
- Citations by year
- 2026: 24 · 2025: 36 · 2024: 26 · 2023: 28 · 2022: 31 · 2021: 40 · 2020: 29 · 2019: 45 · 2018: 30 · 2017: 40 · 2016: 32 · 2015: 61 · 2014: 61 · 2013: 37 · 2012: 42
- FWCI
- 47.55
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- Bristol Research (University of Bristol) (submittedVersion)
- Topics
- Life Sciences › Immunology and Microbiology › Microbiology › Bacterial Infections and Vaccines
- Life Sciences › Immunology and Microbiology › Microbiology › Microbial infections and disease research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- Bordetella pertussis, Bordetella parapertussis, Bordetella bronchiseptica, genome sequencing, comparative genomics, bacterial evolution, gene loss, host adaptation, virulence, Betaproteobacteria, respiratory pathogens
- MeSH terms
- Base Sequence, Bordetella, Bordetella pertussis, DNA, Bacterial, Molecular Sequence Data, Species Specificity, Genome, Bacterial, Bordetella bronchiseptica, Sequence Analysis, DNA
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