The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Literature-curated protein interaction datasets
Open accessAbstract
High-quality datasets are needed to understand how global and local properties of protein-protein interaction, or 'interactome', networks relate to biological mechanisms, and to guide research on individual proteins. In an evaluation of existing curation of protein interaction experiments reported in the literature, we found that curation can be error-prone and possibly of lower quality than commonly assumed.
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Cites
A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., et al. (2000) · Nature · doi:10.1038/35001009 · Cited by 4,706
High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
Yu, H., Braun, P., Yıldırım, M. A., Lemmens, I., Venkatesan, K., Sahalie, J., Hirozane-Kishikawa, T., Gebreab, F., Li, N., Simonis, N., et al. (2008) · Science · doi:10.1126/science.1158684 · Cited by 1,392
Self-citationTaylor, C. F., Field, D., Sansone, S.-A., Aerts, J., Apweiler, R., Ashburner, M., Ball, C. A., Binz, P.-A., Bogue, M., Booth, T., et al. (2008) · Nature Biotechnology · doi:10.1038/nbt.1411 · Cited by 558 · cited 1×
“These for large-scale biology data are under development 59 , and their development is wholeheartedly endorsed by the biocuration community so as to reduce curation error 30 .”
Background
Cited by
Network medicine: a network-based approach to human disease
Barabási, A.-L., Gulbahce, N., & Loscalzo, J. (2011) · Nature Reviews Genetics · doi:10.1038/nrg2918 · Cited by 5,034
Interactome Networks and Human Disease
Vidal, M., Cusick, M. E., & Barabási, A.-L. (2011) · Cell · doi:10.1016/j.cell.2011.02.016 · Cited by 1,771
Self-citationUncovering disease-disease relationships through the incomplete interactome
Menche, J., Sharma, A., Kitsak, M., Ghiassian, S. D., Vidal, M., Loscalzo, J., & Barabási, A.-L. (2015) · Science · doi:10.1126/science.1257601 · Cited by 1,546
Self-citationManzoni, C., Kia, D. A., Vandrovcova, J., Hardy, J., Wood, N. W., Lewis, P. A., & Ferrari, R. (2018) · Briefings in Bioinformatics · doi:10.1093/bib/bbw114 · Cited by 804
Integrative approaches for finding modular structure in biological networks
Mitra, K., Carvunis, A.-R., Ramesh, S. K., & Ideker, T. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3552 · Cited by 535
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Metadata
- Authors
- Cusick, M. E., Yu, H., Smolyar, A., Venkatesan, K., Carvunis, A.-R., Simonis, N., Rual, J.-F., Borick, H., Braun, P., Dreze, M., Vandenhaute, J., Galli, M., Yazaki, J., Hill, D. E., Ecker, J. R., Roth, F. P., & Vidal, M.
- Venue
- Nature Methods
- Published
- 2008-12-30
- Volume
- 6
- Issue
- 1
- Pages
- 39-46
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2077997913
- Cited by
- 307
- References
- 3
- FWCI
- 10.42
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- CoChat. (2026). Citation check: Literature-curated protein interaction datasets. https://app.cochat.ai/papers/10.1038/nmeth.1284
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- Cusick, M. E., Yu, H., Smolyar, A., Venkatesan, K., Carvunis, A.-R., Simonis, N., Rual, J.-F., Borick, H., Braun, P., Dreze, M., Vandenhaute, J., Galli, M., Yazaki, J., Hill, D. E., Ecker, J. R., Roth, F. P., & Vidal, M. (2009). Literature-curated protein interaction datasets. Nature Methods. https://doi.org/10.1038/nmeth.1284
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
