MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

Ting, Lily, Rad, Ramin, Gygi, Steven P, Haas, Wilhelm·2011·Nature Methods

DOI 10.1038/nmeth.1714

Cited by (1,000)

Items 601–700 of 1,000

Isobaric 6-plex and tosyl dual tagging for the determination of positional isomers and quantitation of monounsaturated fatty acids using rapid UHPLC-MS/MS
Michael R. Armbruster, Mahmoud Elhusseiny Mostafa, Rhea N. Caldwell, Scott F. Grady, Christopher Kent Arnatt, James L. Edwards · 2022 · The Analyst
Employing TMT Quantification in a Shotgun-MS Platform
Darragh Patrick O'Brien, John F. Timms · 2014 · Methods in molecular biology
Role of mass spectrometry-based proteomics in the study of cellular reprogramming and induced pluripotent stem cells
Marco Benevento, Javier Muñoz · 2012 · Expert Review of Proteomics
Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging
Carina Ramallo Guevara, Oliver Philipp, Andréa Hamann, Alexandra Werner, Heinz Dieter Osiewacz, Sascha Rexroth, Matthias Rögner, Ansgar Poetsch · 2016 · Molecular & Cellular Proteomics
Phosphoproteome Profiling Using an Isobaric Carrier without the Need for Phosphoenrichment
Yu Mi Kwon, Seonjeong Lee, Narae Park, Shinyeong Ju, Sungho Shin, Seongjin Yoo, Hankyul Lee, Cheolju Lee · 2022 · Analytical Chemistry
Parallel Proteomic Comparison of Mutants With Altered Carbon Metabolism Reveals Hik8 Regulation of PII Phosphorylation and Glycogen Accumulation in a Cyanobacterium
Chengcheng Huang, Xiaoxiao Duan, Haitao Ge, Zhen Xiao, Limin Zheng, Gaojie Wang, Jinghui Dong, Yan Wang, Yuanya Zhang, Xiahe Huang et al. · 2023 · Molecular & Cellular Proteomics
Quantitative proteomics and RNA-sequencing of mouse liver endothelial cells identify novel regulators of BMP6 by iron
Allison L. Fisher, Chia‐Yu Wang, Yang Xu, Sydney Phillips, João A. Paulo, Beata Małachowska, Xia Xiao, Wojciech M Fendler, Joseph Douglas Mancias, Jodie L. Babitt · 2023 · iScience
Experimental and data analysis advances in thermal proteome profiling
Amanda M. Figueroa‐Navedo, Alexander R. Ivanov · 2024 · Cell Reports Methods
Challenges and Strategies for Proteome Analysis of the Interaction of Human Pathogenic Fungi with Host Immune Cells
Thomas Krüger, Ting Luo, Hella Schmidt, Iordana A. Shopova, Olaf Kniemeyer · 2015 · Proteomes
Selective Identification and Site-Specific Quantification of 4-Hydroxy-2-nonenal-Modified Proteins
Siwen Zhang, Caiyun Fang, Wenjuan Yuan, Ying Zhang, Guoquan Yan, Lei Zhang, Yi Di, Yan Cai, Haojie Lu · 2019 · Analytical Chemistry
Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags
2020
Integration of Segmented Ion Fractionation and Differential Ion Mobility on a Q-Exactive Hybrid Quadrupole Orbitrap Mass Spectrometer
Sibylle Pfammatter, Zhaoguan Wu, Éric Bonneil, Derek J. Bailey, Satendra Prasad, Michael W. Belford, Jonathan Rochon, Pierre Picard, Jean Lacoursière, Jean‐Jacques Dunyach et al. · 2021 · Analytical Chemistry
Proteome alterations during clonal isolation of established human pancreatic cancer cell lines
Patrick Bernhard, Tobias Feilen, Manuel Rogg, Klemens Fröhlich, Miguel Cosenza‐Contreras, Frank Hause, Christoph Schell, Oliver Schilling · 2022 · Cellular and Molecular Life Sciences
Peptide Labeling Using Isobaric Tagging Reagents for Quantitative Phosphoproteomics
Lei Cheng, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert · 2015 · Methods in molecular biology
Proteomics show antigen presentation processes in human immune cells after AS03‐H5N1 vaccination
Allison C. Galassie, Johannes B. Goll, Parimal Samir, Travis Lee Jensen, Kristen L. Hoek, Leigh M. Howard, Tara M. Allos, Xinnan Niu, Laura E. Gordy, Clarence Buddy Creech et al. · 2017 · PROTEOMICS
Proteomic identification of virulence-related factors in young and aging C. elegans infected with Pseudomonas aeruginosa
Christina D. King, Daljeet Singh, Kyle Holden, Annie B. Govan, Scott Alexander Keith, Arjumand Ghazi, Renã A. S. Robinson · 2018 · Journal of Proteomics
Identification of Endogenous Adenomatous Polyposis Coli Interaction Partners and β-Catenin–Independent Targets by Proteomics
Olesja Popow, João A. Paulo, Michael H. Tatham, Melanie S. Volk, Alejandro Rojas‐Fernández, Nicolas Loyer, Ian P. Newton, Jens Januschke, Kevin M. Haigis, Inke S Näthke · 2019 · Molecular Cancer Research
Selective Maleylation-Directed Isobaric Peptide Termini Labeling for Accurate Proteome Quantification
Xiaobo Tian, Marcel P. de Vries, Susan W. J. Visscher, Hjalmar P. Permentier, Rainer Bischoff · 2020 · Analytical Chemistry
Additional Precursor Purification in Isobaric Mass Tagging Experiments by Traveling Wave Ion Mobility Separation (TWIMS)
Pavel V. Shliaha, Rebekah Jukes‐Jones, Andy Christoforou, Jonathan Fox, Chris J. Hughes, James Langridge, Kelvin Cain, Kathryn Susan Lilley · 2014 · Journal of Proteome Research
Proteomic profiling across breast cancer cell lines and models
Marian Kalocsay, Matthew J. Berberich, Robert A. Everley, Maulik K. Nariya, Mirra Chung, Benjamin L. Gaudio, Chiara Victor, Gary Andrew Bradshaw, Robyn J. Eisert, Marc A. Hafner et al. · 2023 · Scientific Data
PARP1-SNAI2 transcription axis drives resistance to PARP inhibitor, Talazoparib
Xia Ding, Zhou Zhu, John D. Lapek, Elizabeth A. McMillan, Alexander Zhang, Chi‐Yeh Chung, Sara J. Dubbury, Jennifer Lapira, Sarah J. Firdaus, Xiaolin Kang et al. · 2022 · Scientific Reports
In‐depth analysis of the Sirtuin 5‐regulated mouse brain malonylome and succinylome using library‐free data‐independent acquisitions
Joanna Bons, Jacob Rose, Ran Zhang, Jordan B. Burton, Christopher Carrico, Eric M. Verdin, Birgit Schilling · 2022 · PROTEOMICS
Hyperplexing Approaches for up to 45-Plex Quantitative Proteomic Analysis
Zhen Wu, Weirong Xiang, Lin Huang, Shuwei Li, Xumin Zhang · 2023 · Analytical Chemistry
Integrative Proteogenomics for Differential Expression and Splicing Variation in a DM1 Mouse Model
Elizaveta M. Solovyeva, Stephan Utzinger, Alexandra Vissières, Joanna Mitchelmore, Erik Ahrné, Erwin Hermes, Tania Poetsch, Marie Ronco, Michael Bidinosti, Claudia Merkl et al. · 2023 · Molecular & Cellular Proteomics
Trace Sample Proteome Quantification by Data-Dependent Acquisition without Dynamic Exclusion
Ci Wu, Jiao Lei, Fei Meng, Xingyao Wang, Cassandra J. Wong, Jiaxi Peng, Ge Lin, Anne‐Claude Gingras, Junfeng Ma, Shen Zhang · 2023 · Analytical Chemistry
A six-plex proteome quantification strategy reveals the dynamics of protein turnover
Fangjun Wang, Kai Cheng, Xiaoluan Wei, Hongqiang Qin, Rui Chen, Jing Liu, Hanfa Zou · 2013 · Scientific Reports
Network-based inference from complex proteomic mixtures using SNIPE
David P. Nusinow, Adam Kieżun, Daniel J. O’Connell, Joel M. Chick, Yingzi Yue, Richard L. Maas, Steven P. Gygi, Shamil R. Sunyaev · 2012 · Bioinformatics
Proteomic analysis of cell fate decision
Jenny Hansson, Jeroen Krijgsveld · 2013 · Current Opinion in Genetics & Development
Multi‐mode acquisition (MMA): An MS/MS acquisition strategy for maximizing selectivity, specificity and sensitivity of DIA product ion spectra
Brad J. Williams, Steve J. Ciavarini, Curt Devlin, Steven M. Cohn, Rong Xie, Johannes P.C. Vissers, LeRoy B. Martin, Allen Caswell, James Langridge, Scott J. Geromanos · 2016 · PROTEOMICS
SPECHT — Single-stage phosphopeptide enrichment and stable-isotope chemical tagging: Quantitative phosphoproteomics of insulin action in muscle
Arminja Nadine Kettenbach, Hiroyuki Sano, Susanna R. Keller, Gustav E. Lienhard, Scott A. Gerber · 2014 · Journal of Proteomics
Mass spectrometric characterization of the crustacean neuropeptidome
Qing Yu, Chuanzi OuYang, Zhidan Liang, Lingjun Li · 2014 · EuPA Open Proteomics
Quantitative Proteomic Verification of Membrane Proteins as Potential Therapeutic Targets Located in the 11q13 Amplicon in Cancers
Heather S. Hoover, Jun Li, Jason Marchese, Christopher Rothwell, Jason Borawoski, Douglas A. Jeffery, Larry Alex Gaither, Nancy Finkel · 2015 · Journal of Proteome Research
A novel triplex isobaric termini labeling quantitative approach for simultaneously supplying three quantitative sources
Hucong Jiang, Yin Hongrui, Liqi Xie, Ying Zhang, Lei Zhang, Pengyuan Yang, Haojie Lu · 2017 · Analytica Chimica Acta
High-Resolution Enabled 5-plex Mass Defect-Based N,N-Dimethyl Leucine Tags for Quantitative Proteomics
Xiaofang Zhong, Dustin C. Frost, Lingjun Li · 2019 · Analytical Chemistry
Analyzing Ribosome Remodeling in Health and Disease
Aleksandra A. Petelski, Nikolai Slavov · 2020 · PROTEOMICS
PAG1 directs SRC-family kinase intracellular localization to mediate receptor tyrosine kinase-induced differentiation
Lauren Foltz, Juan Palacios-Moreno, Makenzie E Mayfield, Shelby Kinch, Jordan Dillon, Jed T. Syrenne, Tyler M. Levy, Mark L. Grimes · 2020 · Molecular Biology of the Cell
Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the Stabilitome
Tarick J. El‐Baba, Shannon A. Raab, R. Buckley, Christopher J. Brown, Corinne A. Lutomski, Lucas W. Henderson, Daniel W. Woodall, Jiangchuan Shen, Jonathan C. Trinidad, Hengyao Niu et al. · 2021 · Analytical Chemistry
Chemically Induced Degradation of Native Proteins by Direct Recruitment to the 26S Proteasome
Madeline Balzarini, Weijun Gui, Isuru M. Jayalath, Bin-Bin Schell, Joel Tong, Thomas J. Kodadek · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
Proteomic and Phosphoproteomic Changes of MAPK-Related Inflammatory Response in an Animal Model of Neuropathic Pain by Differential Target Multiplexed SCS and Low-Rate SCS
David Cedeño, Dana M Tilley, Francesco Vetri, David C Platt, Ricardo Vallejo · 2022 · Journal of Pain Research
Modern Data Acquisition Approaches in Proteomics Based on Dynamic Instrument Control
Michael J. Plank · 2022 · Journal of Proteome Research
A Pathogenic Missense Mutation in Kainate Receptors Elevates Dendritic Excitability and Synaptic Integration through Dysregulation of SK Channels
Toshihiro Nomura, Sakiko Taniguchi, Yizhi Wang, Nai-Hsing Yeh, Anika P. Wilen, Charlotte Castillon, Kendall M. Foote, Jian Xu, John N. Armstrong, Jeffrey N. Savas et al. · 2023 · Journal of Neuroscience
Quantitative proteomics and applications in covalent ligand discovery
Ananya A. Basu, Xiaoyu Zhang · 2024 · Frontiers in Chemical Biology
Neuron type-specific proteomics reveals distinct Shank3 proteoforms in iSPNs and dSPNs lead to striatal synaptopathy in Shank3B–/– mice
Yizhi Wang, Tamara Perez‐Rosello, Samuel N. Smukowski, Dalton James Surmeier, Jeffrey N. Savas · 2024 · Molecular Psychiatry
Evaluation of Protein Identification and Quantification by the diaPASEF Method on timsTOF SCP
Ju Wang, Haiyan Tan, Yingxue Fu, Ashutosh Mishra, Huan Sun, Zhen Wang, Zhiping Wu, Xusheng Wang, Geidy E. Serrano, Thomas G. Beach et al. · 2024 · Journal of the American Society for Mass Spectrometry
Non-targeted proteomics of acute respiratory distress syndrome: clinical and research applications
Xu-Peng Wen, Yue-Zhong Zhang, Qi-Quan Wan · 2021 · Proteome Science
Inducible Protein Degradation as a Strategy to Identify Phosphoprotein Phosphatase 6 Substrates in RAS-Mutant Colorectal Cancer Cells
Natasha C. Mariano, Scott F. Rusin, Isha Nasa, Arminja Nadine Kettenbach · 2023 · Molecular & Cellular Proteomics
Quantitative proteomic analysis reveals that lipopolysaccharide induces mitogen‐activated protein kinase‐dependent activation in human microglial cells
Kyunghee Byun, Jin Young Kim, Enkhjargal Bayarsaikhan, Daesik Kim, Goo‐Bo Jeong, Ki Na Yun, Hye Kyeong Min, Seung Up Kim, Jong Shin Yoo, Bong‐Hee Lee · 2012 · Electrophoresis
Isobaric Tag‐Based Protein Profiling of a Nicotine‐Treated Alpha7 Nicotinic Receptor‐Null Human Haploid Cell Line
João A. Paulo, Steven P. Gygi · 2018 · PROTEOMICS
Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution Using hyperLOPIT
Daniel J. H. Nightingale, Stephen G. Oliver, Kathryn Susan Lilley · 2019 · Methods in molecular biology
Strain-Specific Peptide (SSP) Interference Reference Sample: A Genetically Encoded Quality Control for Isobaric Tagging Strategies
Tian Zhang, Gregory R. Keele, Gary A. Churchill, Steven P. Gygi, João A. Paulo · 2021 · Analytical Chemistry
Affinity-based profiling of endogenous phosphoprotein phosphatases by mass spectrometry
Brooke L. Brauer, Kwame Wiredu, Sierra Mitchell, Greg B. G. Moorhead, Scott A. Gerber, Arminja Nadine Kettenbach · 2021 · Nature Protocols
Neuronal activity regulates the nuclear proteome to promote activity-dependent transcription
Wendy A. Herbst, Weixian Deng, James Akira Wohlschlegel, Jennifer M. Achiro, Kelsey C. Martin · 2021 · The Journal of Cell Biology
CqsA-introduced quorum sensing inhibits type VI secretion system 2 through an OpaR-dependent pathway in Vibrio parahaemolyticus
Kui Wu, Yongyan Long, Qian Liu, Wei Wang, Guoyin Fan, Hui Long, Yangyun Zheng, Xiansheng Ni, Shengen Chen, Haiying Chen et al. · 2021 · Microbial Pathogenesis
Mutation of the RelA(p65) Thr505 phosphosite disrupts the DNA replication stress response leading to CHK1 inhibitor resistance
Jill E. Hunter, Amy E. Campbell, Jacqueline A. Butterworth, Helene Sellier, Nicola L. Hannaway, Saimir Luli, Achilleas Floudas, Niall Steven Kenneth, Adam J. Moore, Philip Brownridge et al. · 2022 · Biochemical Journal
LKB1 regulates JNK-dependent stress signaling and apoptotic dependency of KRAS-mutant lung cancers
Li, Chendi, Syed, Mohammed Usman, Nimbalkar, Anahita, Shen, Yi, Vieira, Melissa D., Fraser, Cameron, Inde, Zintis, Qin, Xingping, Ouyang, Jian, Kreuzer, Johannes et al. · 2025 · Nature Communications
Isobaric labeling: Expanding the breadth, accuracy, depth, and diversity of sample multiplexing
João A. Paulo · 2022 · PROTEOMICS
The anaphase-promoting complex controls a ubiquitination-phosphoprotein axis in chromatin during neurodevelopment
Leya Ledvin, Brandon M. Gassaway, Jonathan Tawil, Olivia Urso, Donald P. Pizzo, Kaeli A. Welsh, Derek L. Bolhuis, Daniel Fisher, Azad Bonni, Steven P. Gygi et al. · 2023 · Developmental Cell
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Infrared-Tandem Mass Tags
Trenton M. Peters-Clarke, Yiran Liang, Keaton L. Mertz, Kenneth W. Lee, Michael S. Westphall, Joshua D. Hinkle, Graeme C. McAlister, John E. P. Syka, Ryan Kelly, Joshua J. Coon · 2024 · Journal of Proteome Research
Proteomic analysis of the pyrenoid‐traversing membranes of Chlamydomonas reinhardtii reveals novel components
Eric Franklin, Lianyong Wang, Edward R. Cruz, Keenan Duggal, Sabrina L. Ergun, Aastha Garde, Alice Lunardon, Weronika Patena, Cole Pacini, Martin C. Jonikas · 2025 · New Phytologist
Exploiting the multiplexing capabilities of tandem mass tags for high-throughput estimation of cellular protein abundances by mass spectrometry
Erik Ahrné, Amalia Martínez-Segura, Afzal P Syed, Arnau Viña‐Vilaseca, Andreas J Gruber, Samuel Marguerat, Alexander Schmidt · 2015 · Methods
In Vivo Fast Photochemical Oxidation of Proteins Using Enhanced Multiplexing Proteomics
Jessica A. Espino, Christina D. King, Lisa M. Jones, Renã A. S. Robinson · 2020 · Analytical Chemistry
A Collision-Induced Dissociation Cleavable Isobaric Tag for Peptide Fragment Ion-Based Quantification in Proteomics
Xiaobo Tian, Marcel P. de Vries, Hjalmar P. Permentier, Rainer Bischoff · 2020 · Journal of Proteome Research
TAG-TMTpro, a Hyperplexing Quantitative Approach for High-Throughput Proteomic Studies
Zhen Wu, Yi Shen, Xumin Zhang · 2022 · Analytical Chemistry
Targeting protein tyrosine phosphatases for CDK6-induced immunotherapy resistance
Xueliang Gao, Yongxia Wu, Joel M. Chick, Andrea Abbott, Baishan Jiang, Jingxin Wang, Susana Comte‐Walters, Roger H. Johnson, Nathaniel P. Oberholtzer, Michael I. Nishimura et al. · 2023 · Cell Reports
AzidoTMT Enables Direct Enrichment and Highly Multiplexed Quantitation of Proteome-Wide Functional Residues
Taylur P. Ma, Anita Izrael-Tomasevic, Rana M Mroue, Hanna G. Budayeva, Sushant Malhotra, Ryan M. Raisner, Marie Evangelista, Christopher M. Rose, Donald S. Kirkpatrick, Kebing Yu · 2023 · Journal of Proteome Research
Automated Sample Preparation Workflow for Tandem Mass Tag-Based Proteomics
Dong‐Gi Mun, Neha S. Joshi, Rohit Budhraja, Gunveen S. Sachdeva, Taewook Kang, Firdous Ahmad Bhat, Husheng Ding, Benjamin J. Madden, Jun Zhong, Akhilesh Pandey · 2023 · Journal of the American Society for Mass Spectrometry
Important options available — from start to finish — for translating proteomics results to clinical chemistry
Niels H. H. Heegaard, Ole Østergaard, Justyna M.C. Bahl, Martin Overgaard, Hans Christian Beck, Lars Melholt Rasmussen, Martin R. Larsen · 2014 · PROTEOMICS - CLINICAL APPLICATIONS
Enhanced Sample Multiplexing of Tissues Using Combined Precursor Isotopic Labeling and Isobaric Tagging (cPILOT)
Christina D. King, Joseph D. Dudenhoeffer, Liqing Gu, Adam R. Evans, Renã A. S. Robinson · 2017 · Journal of Visualized Experiments
STK3 is a therapeutic target for a subset of acute myeloid leukemias
Aylin Camgöz, Maciej Paszkowski‐Rogacz, Shankha Satpathy, Martin Wermke, Martin V. Hamann, Malte v. Bonin, Chunaram Choudhary, Stefan Knapp, Frank Buchholz · 2018 · Oncotarget
Revealing functional insights into ER proteostasis through proteomics and interactomics
Madison T. Wright, Lars Plate · 2020 · Experimental Cell Research
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston · 2021 · Journal of Biological Chemistry
New Set of Isobaric Labeling Reagents for Quantitative 16Plex Proteomics
Xiaolian Ning, Qidan Li, Jin Zi, Zhanlong Mei, Jie Liu, Yuxing Zhang, Mao Bi, Yan Ren, Xingang Liu, Chao Lv et al. · 2023 · Analytical Chemistry
Nonisotopic Reagents for a Cost-Effective Increase in Sample Throughput of Targeted Quantitative Proteomics
Mary Joan Castillo, Adam J. McShane, Min Cai, Yuanyuan Shen, Lei Wang, Xudong Yao · 2015 · Analytical Chemistry
Approaches to identify kinase dependencies in cancer signalling networks
Maria Dermit, Arran David Dokal, Pedro R. Cutillas · 2017 · FEBS Letters
Correlation profiling for determining kinase-substrate relationships
Fiona Elizabeth McAllister, Steven P. Gygi · 2013 · Methods
Phosphoproteomics: Approaches, Developments, and Challenges
Martin R. Larsen, Alistair V.G. Edwards · 2015 · Elsevier eBooks
Functional Proteomics Characterization of the Role of SPRYD7 in Colorectal Cancer Progression and Metastasis
Ana Montero‐Calle, Sofía Jiménez de Ocaña, Ruth Benavente-Naranjo, Raquel Rejas‐González, Rubén A. Bartolomé, Javier Martínez‐Useros, Rodrigo Sanz, Jana Dziaková, María Jesús Fernández‐Aceñero, Marta Mendiola et al. · 2023 · Cells
Research Progress in Isotope Labeling/Tags-Based Protein Quantification and Metrology Technologies
Fan Wu, Chenhuan Zhang, Rui Chen, Zhanying Chu, Bin Han, Rui Zhai · 2024 · Journal of Proteome Research
Unveiling the Molecular Footprint: Proteome-Based Biomarkers for Alzheimer’s Disease
Mukul Jain, Rupal Dhariwal, Nil Patil, Sandhya Ojha, Reshma Tendulkar, Mugdha Tendulkar, Parmdeep Singh Dhanda, Alpa Yadav, Prashant Kaushik · 2023 · Proteomes
Induced degradation of lineage-specific oncoproteins drives the therapeutic vulnerability of small cell lung cancer to PARP inhibitors
Chiho Kim, Xudong Wang, Zhengshuai Liu, Jianwei Hao, Shuai Wang, Peng Li, Zhenzhen Zi, Qing Ding, Seoyeon Jang, Jiwoong Kim et al. · 2024 · Science Advances
Partially isobaric peptide termini labeling assisted proteome quantitation based on MS and MS/MS signals
Shen Zhang, Qi Wu, Yichu Shan, Yuan Zhou, Lihua Zhang, Yukui Zhang · 2014 · Journal of Proteomics
Ultra‐high intra‐spectrum mass accuracy enables unambiguous identification of fragment reporter ions in isobaric multiplexed quantitative proteomics
Fiona Pachl, Kurt Fellenberg, Corinna Wagner, Bernhard Küster · 2012 · PROTEOMICS
Proteomic discovery of host kinase signaling in bacterial infections
Erik Arne Richter, Jörg Mostertz, Falko Hochgräfe · 2016 · PROTEOMICS - CLINICAL APPLICATIONS
Mass Spectrometry-Based Approaches to Understand the Molecular Basis of Memory
Arthur Henriques Pontes, Marcelo Valle de Sousa · 2016 · Frontiers in Chemistry
MS3-IDQ: Utilizing MS3 Spectra beyond Quantification Yields Increased Coverage of the Phosphoproteome in Isobaric Tag Experiments
Matthew J. Berberich, João A. Paulo, Robert A. Everley · 2018 · Journal of Proteome Research
Overexpression of the 14-3-3γ protein in uterine leiomyoma cells results in growth retardation and increased apoptosis
Qi Shen, Xiaoli Hu, Lulu Zhou, Shuangwei Zou, Lu‐Zhe Sun, Xueqiong Zhu · 2018 · Cellular Signalling
Quantitative Proteome Profiling Reveals Cellobiose-Dependent Protein Processing and Export Pathways for the Lignocellulolytic Response in Neurospora crassa
Dan Liu, Yisong Liu, Duoduo Zhang, Xiaoting Chen, Qian Liu, Bentao Xiong, Lihui Zhang, Linfang Wei, Yifan Wang, Hao Fang et al. · 2020 · Applied and Environmental Microbiology
Affinity Enrichment Chemoproteomics for Target Deconvolution and Selectivity Profiling
Thilo Werner, Michael Steidel, H. Christian Eberl, Marcus Bantscheff · 2021 · Methods in molecular biology
Protocol for clickable photoaffinity labeling and quantitative chemical proteomics
Wankyu Lee, Zhen Huang, Christopher W. am Ende, Uthpala I. Seneviratne · 2021 · STAR Protocols
NHS-Ester Tandem Labeling in One Pot Enables 48-Plex Quantitative Proteomics
Sansi Xing, Akshat M. Pai, Ruilin Wu, Yu Lu · 2021 · Analytical Chemistry
Plasma lipopolysaccharide‐binding protein is a biomarker for future venous thromboembolism: Results from discovery and validation studies
Søren Beck Jensen, Nadezhda Latysheva, Kristian Hindberg, Thor Ueland · 2022 · Journal of Internal Medicine
Selective modulation of cell surface proteins during vaccinia infection: A resource for identifying viral immune evasion strategies
Delphine Depierreux, Arwen F. Altenburg, Lior Soday, Alice Fletcher-Etherington, Robin Antrobus, Brian J. Ferguson, Michael P. Weekes, Geoffrey L. Smith · 2022 · PLoS Pathogens
Regulation of CHK1 inhibitor resistance by a c-Rel and USP1 dependent pathway
Jill E. Hunter, Amy E. Campbell, Nicola L. Hannaway, Scott T. Kerridge, Saimir Luli, Jacqueline A. Butterworth, Helene Sellier, Reshmi Mukherjee, Nikita Dhillon, Praveen Dhondurao Sudhindar et al. · 2022 · Biochemical Journal
mIMT-visHTS: A novel method for multiplexing isobaric mass tagged datasets with an accompanying visualization high throughput screening tool for protein profiling
Piero Ricchiuto, Hiroshi Iwata, Katsumi Yabusaki, Iwao Yamada, Brett Pieper, Amitabh Sharma, Masanori Aikawa, Sasha A. Singh · 2015 · Journal of Proteomics
Quantitative Phosphoproteomic Analysis of Brain Tissues
Bing Bai, Haiyan Tan, Junmin Peng · 2017 · Methods in molecular biology
Simple Method to Quantify Protein Abundances from 1000 Cells
Vitrinel, Burcu, Iannitelli, Dylan E., Mazzoni, Esteban O., Christiaen, Lionel, Vogel, Christine · 2020 · ACS Omega
The pursuit of ultrasensitive phosphoproteomics to unravel signalling in rare cells
Emily J. Gaizley, Silvia Šurinová · 2025 · Communications Biology
Analysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platform
Hui-Yin Chang, Yamei Deng, Ruohong Li, Dmitry M. Avtonomov, Bo Wen, Sarah Haynes, Felipe da Veiga Leprevost, Bing Zhang, Fengchao Yu, Alexey I. Nesvizhskii · 2026 · Nature Communications
Iron Deficiency and Recovery in Yeast: A Quantitative Proteomics Approach
José Navarrete-Perea, Ángel Guerra-Moreno, Jonathan G. Van Vranken, Marta Isasa, João A. Paulo, Steven P. Gygi · 2021 · Journal of Proteome Research
Comparing and integrating TMT‐SPS‐MS3 and label‐free quantitative approaches for proteomics scrutiny in recalcitrant Mango (Mangifera indica L.) peel tissue during postharvest period
Mirna V. Bautista‐Valle, Carolina Camacho-Vázquez, José M. Elizalde‐Contreras, Juan Luis Monribot‐Villanueva, Abraham Marcelino Vidal Limón, Esaú Bojórquez‐Velázquez, Jesús Alejandro Zamora‐Briseño, Jesús Valentín Jorrín-Novo, Eliel Ruíz-May · 2023 · PROTEOMICS