MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
Ting, Lily, Rad, Ramin, Gygi, Steven P, Haas, Wilhelm·2011·Nature Methods
Cited by (1,000)
Items 201–300 of 1,000
- SETD1A protects from senescence through regulation of the mitotic gene expression programKen Tajima, Satoru Matsuda, Toshifumi Yae, Benjamin Jacob Drapkin, Robert Tyler Morris, Myriam Boukhali, Kira Niederhoffer, Valentine Comaills, Taronish D. Dubash, Linda T. Nieman et al. · 2019 · Nature Communications
- A review on recent trends in the phosphoproteomics workflow. From sample preparation to data analysisJiřı́ Urban · 2021 · Analytica Chimica Acta
- Multiomic analysis identifies CPT1A as a potential therapeutic target in platinum-refractory, high-grade serous ovarian cancerDongqing Huang, Shrabanti Chowdhury, Hong Wang, Sara R. Savage, Richard G. Ivey, Jacob J. Kennedy, Jeffrey R. Whiteaker, Chenwei Lin, Xiaonan Hou, Ann L. Oberg et al. · 2021 · Cell Reports Medicine
- In situ cell-type-specific cell-surface proteomic profiling in miceShuster, S. Andrew, Li, Jiefu, Chon, URee, Sinantha-Hu, Miley C., Luginbuhl, David J., Udeshi, Namrata D., Carey, Dominique Kiki, Takeo, Yukari H., Xie, Qijing, Xu, Chuanyun et al. · 2022 · Neuron
- Lysine Demethylase KDM4A Associates with Translation Machinery and Regulates Protein SynthesisCapucine Van Rechem, Joshua C. Black, Myriam Boukhali, Martin J. Aryee, S. Gräslund, Wilhelm Haas, Cyril H. Benes, Johnathan R. Whetstine · 2015 · Cancer Discovery
- High‐performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implicationsJames C. Williamson, Alistair V.G. Edwards, Thiago Verano‐Braga, Veit Schwämmle, Frank Kjeldsen, Ole Nørregaard Jensen, Martin R. Larsen · 2016 · PROTEOMICS
- Cdkal1, a type 2 diabetes susceptibility gene, regulates mitochondrial function in adipose tissueColin J. Palmer, Raphael J. Bruckner, João A. Paulo, Lawrence Kazak, Jonathan Z. Long, Amir I. Mina, Zhaoming Deng, Katherine B. LeClair, Jessica A. Hall, Shangyu Hong et al. · 2017 · Molecular Metabolism
- Improving Qualitative and Quantitative Performance for MSE-based Label-free ProteomicsNicholas J. Bond, Pavel V. Shliaha, Kathryn Susan Lilley, Laurent Gatto · 2013 · Journal of Proteome Research
- Comparing the Diagnostic Classification Accuracy of iTRAQ, Peak-Area, Spectral-Counting, and emPAI Methods for Relative Quantification in Expression ProteomicsAdam Dowle, Julie C. Wilson, Jerry R. Thomas · 2016 · Journal of Proteome Research
- Leveraging Compound Promiscuity to Identify Targetable Cysteines within the KinomeSuman Rao, Deepak Gurbani, Guangyan Du, Robert A. Everley, Christopher M. Browne, A. Chaikuad, Li Tan, Martin Schröder, Sudershan Reddy Gondi, Scott B. Ficarro et al. · 2019 · Cell chemical biology
- Deep multiomics profiling of brain tumors identifies signaling networks downstream of cancer driver genesHong Wang, Alexander K. Diaz, Timothy I. Shaw, Yuxin Li, Mingming Niu, Ji-Hoon Cho, Barbara S. Paugh, Yang Zhang, Jeffrey M. Sifford, Bing Bai et al. · 2019 · Nature Communications
- Quantitative Protein Analysis by Mass SpectrometryVishwajeeth Pagala, Anthony A. High, Xusheng Wang, Haiyan Tan, Kiran Kodali, Ashutosh Mishra, Kanisha Kavdia, Yanji Xu, Zhiping Wu, Junmin Peng · 2015 · Methods in molecular biology
- Physical and Molecular Landscapes of Mouse Glioma Extracellular Vesicles Define HeterogeneityAron Gyuris, José Navarrete-Perea, Ala Jo, Simona Cristea, Shuang Zhou, Kyle B. Fraser, Zhiyun Wei, Anna M. Krichevsky, Ralph Weissleder, Hakho Lee et al. · 2019 · Cell Reports
- Mapping glycan-mediated galectin-3 interactions by live cell proximity labelingEugene Joeh, Timothy R. O’Leary, Weichao Li, Richard L. Hawkins, Jonathan R. Hung, Christopher G. Parker, Mia L. Huang · 2020 · Proceedings of the National Academy of Sciences
- BoxCar and Library-Free Data-Independent Acquisition Substantially Improve the Depth, Range, and Completeness of Label-Free Quantitative ProteomicsDevang Mehta, Sabine Scandola, R. Glen Uhrig · 2022 · Analytical Chemistry
- Proximity Labeling in PlantsShou‐Ling Xu, Ruben Shrestha, Sumudu S Karunadasa, Peiqiao Xie · 2023 · Annual Review of Plant Biology
- Effects of MEK inhibitors GSK1120212 and PD0325901 in vivo using 10‐plex quantitative proteomics and phosphoproteomicsJoão A. Paulo, Fiona Elizabeth McAllister, Robert A. Everley, Sean A. Beausoleil, Alexander S. Banks, Steven P. Gygi · 2014 · PROTEOMICS
- Multiplexed Phosphoproteomic Profiling Using Titanium Dioxide and Immunoaffinity Enrichments Reveals Complementary Phosphorylation EventsAnthony P. Possemato, João A. Paulo, Daniel Mulhern, Ailan Guo, Steven P. Gygi, Sean A. Beausoleil · 2017 · Journal of Proteome Research
- Synaptic proteins associated with cognitive performance and neuropathology in older humans revealed by multiplexed fractionated proteomicsCarlyle, Becky C., Kandigian, Savannah E., Kreuzer, Johannes, Das, Sudeshna, Trombetta, Bianca A., Kuo, Yikai, Bennett, David A., Schneider, Julie A., Petyuk, Vladislav A., Kitchen, Robert R. et al. · 2021 · Neurobiology of Aging
- 21-plex DiLeu Isobaric Tags for High-Throughput Quantitative ProteomicsDustin C. Frost, Feng Yu, Lingjun Li · 2020 · Analytical Chemistry
- A review on recent developments in mass spectrometry instrumentation and quantitative tools advancing bacterial proteomicsLaurence Van Oudenhove, Bart V. Devreese · 2013 · Applied Microbiology and Biotechnology
- Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's DiseaseRobert H. Mills, Yoshiki Vázquez‐Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg C. Humphrey, Larry L. Smarr, Rob D. Knight, David J. Gonzalez · 2019 · mSystems
- PUMILIO proteins promote colorectal cancer growth via suppressing p21Yuanyuan Gong, Zukai Liu, Yihang Yuan, Zhenzhen Yang, Jiawei Zhang, Qin Lu, Wei Wang, Chao Fang, Haifan Lin, Sanhong Liu · 2022 · Nature Communications
- Proteomics of protein post-translational modifications implicated in neurodegenerationRu‐Jing Ren, Eric B. Dammer, Gang Wang, Nicholas T. Seyfried, Allan I. Levey · 2014 · Translational Neurodegeneration
- A Bayesian mixture modelling approach for spatial proteomicsOliver M. Crook, Claire M. Mulvey, Paul Kirk, Kathryn Susan Lilley, Laurent Gatto · 2018 · PLoS Computational Biology
- Quantitative LC–MS/MS Glycomic Analysis of Biological Samples Using AminoxyTMTShiyue Zhou, Yunli Hu, Lucas J. Veillon, Sergei I. Snovida, John C. Rogers, Julian A. Saba, Yehia S. Mechref · 2016 · Analytical Chemistry
- Proteogenomic Network Analysis of Context-Specific KRAS Signaling in Mouse-to-Human Cross-Species TranslationBrubaker, Douglas K., Paulo, Joao A., Sheth, Shikha, Poulin, Emily J., Popow, Olesja, Joughin, Brian A., Strasser, Samantha Dale, Starchenko, Alina, Gygi, Steven P., Lauffenburger, Douglas A. et al. · 2019 · Cell Systems
- Precise Temporal Regulation of Post-transcriptional Repressors Is Required for an Orderly Drosophila Maternal-to-Zygotic TransitionWen Xi Cao, Sarah Kabelitz, Meera Gupta, Eyan Yeung, Sichun Lin, Christiane Rammelt, Christian H. Ihling, Filip Pekovic, Timothy C.H. Low, Najeeb U. Siddiqui et al. · 2020 · Cell Reports
- Enrichment of Neurodegenerative Microglia Signature in Brain-Derived Extracellular Vesicles Isolated from Alzheimer’s Disease Mouse ModelsSatoshi Muraoka, Mark P. Jedrychowski, Naotoshi Iwahara, Mohammad Abdullah, Kristen D. Onos, Kelly J. Keezer, Jianqiao Hu, Seiko Ikezu, Gareth R. Howell, Steven P. Gygi et al. · 2021 · Journal of Proteome Research
- Using ion purity scores for enhancing quantitative accuracy and precision in complex proteomics samplesScott J. Geromanos, Chris J. Hughes, Steve J. Ciavarini, Johannes P.C. Vissers, James Langridge · 2012 · Analytical and Bioanalytical Chemistry
- Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein VprJohn D. Lapek, Mary K. Lewinski, Jacob M. Wozniak, John Guatelli, David J. Gonzalez · 2017 · Molecular & Cellular Proteomics
- Amine-reactive Neutron-encoded Labels for Highly Plexed Proteomic QuantitationAlexander S. Hebert, Anna E. Merrill, Jonathan A. Stefely, Derek J. Bailey, Craig D. Wenger, Michael S. Westphall, David J. Pagliarini, Joshua J. Coon · 2013 · Molecular & Cellular Proteomics
- Characterizing Ubiquitination Sites by Peptide-based Immunoaffinity EnrichmentDaisy J. Bustos, Corey E. Bakalarski, Yanling Yang, Junmin Peng, Donald S. Kirkpatrick · 2012 · Molecular & Cellular Proteomics
- New techniques, applications and perspectives in neuropeptide researchKellen DeLaney, Amanda Rae Buchberger, Louise E. Atkinson, Stefan Gründer, Angela Mousley, Lingjun Li · 2018 · Journal of Experimental Biology
- Super-SILAC: current trends and future perspectivesAnjana Shenoy, Tamar Geiger · 2014 · Expert Review of Proteomics
- Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout StrainsMarta Isasa, Christopher M. Rose, Suzanne Elsasser, José Navarrete-Perea, João A. Paulo, Daniel J. Finley, Steven P. Gygi · 2015 · Journal of Proteome Research
- Polarized microtubule remodeling transforms the morphology of reactive microglia and drives cytokine releaseMax Adrian, Martin Weber, Ming‐Chi Tsai, Caspar Glock, Olga I. Kahn, Lilian Phu, Tommy K. Cheung, William J. Meilandt, Christopher M. Rose, Casper C. Hoogenraad · 2023 · Nature Communications
- Comparative Evaluation of Two Isobaric Labeling Tags, DiART and iTRAQZhen Chen, Quanhui Wang, Liang Lin, Qi Tang, James L. Edwards, Shuwei Li, Siqi Liu · 2012 · Analytical Chemistry
- Quantitative phosphoproteomics reveals new roles for the protein phosphatase PP6 in mitotic cellsScott F. Rusin, Kate A. Schlosser, Mark E. Adamo, Arminja Nadine Kettenbach · 2015 · Science Signaling
- Mass spectrometry based proteomics as foodomics tool in research and assurance of food quality and safetyUroš Andjelković, Djuro Josić · 2018 · Trends in Food Science & Technology
- Temporal Proteomic Analysis of Herpes Simplex Virus 1 Infection Reveals Cell-Surface Remodeling via pUL56-Mediated GOPC DegradationTimothy K. Soh, Colin T. R. Davies, Julia Muenzner, Leah M. Hunter, Henry G. Barrow, Viv Connor, Clément R. Bouton, Cameron Smith, Edward Emmott, Robin Antrobus et al. · 2020 · Cell Reports
- A Tutorial Review of Labeling Methods in Mass Spectrometry-Based Quantitative ProteomicsZicong Wang, Peng-Kai Liu, Lingjun Li · 2024 · ACS Measurement Science Au
- Integrative proteomics identifies a conserved Aβ amyloid responsome, novel plaque proteins, and pathology modifiers in Alzheimer’s diseaseYona Levites, Eric B. Dammer, Yong Ran, Wangchen Tsering, Duc M. Duong, Measho H. Abreha, Joshna Dharmendrabhai Gadhavi, Kiara Lolo, Jorge A. Trejo‐Lopez, Jennifer Phillips et al. · 2024 · Cell Reports Medicine
- Spatial proteomics for understanding the tissue microenvironmentYiheng Mao, Xi Wang, Peiwu Huang, Ruijun Tian · 2021 · The Analyst
- A Biologist's Field Guide to Multiplexed Quantitative ProteomicsCorey E. Bakalarski, Donald S. Kirkpatrick · 2016 · Molecular & Cellular Proteomics
- Improvement of Quantitative Measurements in Multiplex Proteomics Using High-Field Asymmetric Waveform SpectrometrySibylle Pfammatter, Éric Bonneil, Pierre Thibault · 2016 · Journal of Proteome Research
- MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed ProteinsConstantin Ammar, Markus Gruber, Gergely Csaba, Ralf Zimmer · 2019 · Molecular & Cellular Proteomics
- Benchmarking Quantitative Performance in Label-Free ProteomicsJames A. Dowell, Logan J. Wright, Eric A. Armstrong, John M. Denu · 2021 · ACS Omega
- Time-resolved profiling of RNA binding proteins throughout the mRNA life cycleYeon Choi, Buyeon Um, Yongwoo Na, Jeesoo Kim, V. Narry Kim, V. Narry Kim · 2024 · Molecular Cell
- Five-plex isotope dimethyl labeling for quantitative proteomicsYue Wu, Fangjun Wang, Zheyi Liu, Hongqiang Qin, Chunxia Song, Junfeng Huang, Yangyang Bian, Xiaoluan Wei, Jing Dong, Hanfa Zou · 2013 · Chemical Communications
- The role of quantitative mass spectrometry in the discovery of pancreatic cancer biomarkers for translational scienceDaniel Ansari, Linus Aronsson, Agata Sasor, Charlotte Welinder, Melinda Rezeli, György Marko‐Varga, Roland E. Andersson · 2014 · Journal of Translational Medicine
- Deep Coverage of Global Protein Expression and Phosphorylation in Breast Tumor Cell Lines Using TMT 10-plex Isobaric LabelingFang-Ke Huang, Guoan Zhang, Kevin Lawlor, Arpi Nazarian, John Philip, Paul Tempst, Noah Dephoure, Thomas A. Neubert · 2017 · Journal of Proteome Research
- Data-independent Acquisition Improves Quantitative Cross-linking Mass SpectrometryFränze Müller, Lars Kolbowski, Oliver M. Bernhardt, Lukas Reiter, Juri Rappsilber · 2019 · Molecular & Cellular Proteomics
- A dynamic view of the proteomic landscape during differentiation of ReNcell VM cells, an immortalized human neural progenitor lineYuyu Song, Kartik Subramanian, Matthew J. Berberich, Steven Rodriguez, Isabel J. Latorre, Catherine M. Luria, Robert A. Everley, Mark W. Albers, Timothy John Mitchison, Peter Karl Sorger · 2019 · Scientific Data
- Is label‐free LC‐MS/MS ready for biomarker discovery?Marianne Sandin, Aakash Chawade, Fredrik Levander · 2015 · PROTEOMICS - CLINICAL APPLICATIONS
- Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface codeXie, Qijing, Li, Jiefu, Li, Hongjie, Udeshi, Namrata D., Svinkina, Tanya, Orlin, Daniel, Kohani, Sayeh, Guajardo, Ricardo, Mani, D.R., Xu, Chuanyun et al. · 2022 · Neuron
- Proteomics in the pharmaceutical and biotechnology industry: a look to the next decadeJennie Rebecca Lill, William Rodney Mathews, Christopher M. Rose, Markus Schirle · 2021 · Expert Review of Proteomics
- Multiomics analyses reveal early metabolic imbalance and mitochondrial stress in neonatal photoreceptors leading to cell death in Pde6brd1/rd1 mouse model of retinal degenerationKe Jiang, Anupam K. Mondal, Yogita K. Adlakha, Jessica Gumerson, Angel M. Aponte, Linn M. Gieser, Jung-Woong Kim, Alexis Boleda, Matthew J. Brooks, Jacob K. Nellissery et al. · 2022 · Human Molecular Genetics
- The Intriguing Landscape of Single‐Cell Protein AnalysisHaiyang Xie, Xianting Ding · 2022 · Advanced Science
- Tribbles ortholog NIPI-3 and bZIP transcription factor CEBP-1 regulate a Caenorhabditis elegans intestinal immune surveillance pathwayDeborah L. McEwan, Rhonda L. Feinbaum, Nicholas Stroustrup, Wilhelm Haas, Annie L. Conery, Anthony N. Anselmo, Ruslan I. Sadreyev, Frederick M. Ausubel · 2016 · BMC Biology
- Mass Spectrometry-Based Proteomics for Pre-Eclampsia and Preterm BirthKai Pong Law, Ting-Li Han, Chao Tong, Philip Newton Baker · 2015 · International Journal of Molecular Sciences
- Comprehensive cell surface proteomics defines markers of classical, intermediate and non-classical monocytesBenjamin J. Ravenhill, Lior Soday, Jack W. Houghton, Robin Antrobus, Michael P. Weekes · 2020 · Scientific Reports
- Inferring protein-protein interaction networks from mass spectrometry-based proteomic approaches: a mini-reviewYugandhar, Kumar, Gupta, Shagun, Yu, Haiyuan · 2019 · Computational and Structural Biotechnology Journal
- Neutrophil profiles of pediatric COVID-19 and multisystem inflammatory syndrome in childrenBrittany P. Boribong, Thomas James LaSalle, Yannic C. Bartsch, Felix E. Ellett, Maggie Loiselle, Jameson P. Davis, Anna L. K. Gonye, David B. Sykes, Soroush Hajizadeh, Johannes Kreuzer et al. · 2022 · Cell Reports Medicine
- Comprehensive and Scalable Highly Automated MS-Based Proteomic Workflow for Clinical Biomarker Discovery in Human PlasmaLoı̈c Dayon, Antonio Núñez Galindo, John Corthésy, Ornella Cominetti, Martin Kussmann · 2014 · Journal of Proteome Research
- cysTMTRAQ—An Integrative Method for Unbiased Thiol-based Redox ProteomicsJennifer Parker, Kelly M. Balmant, Fanchao Zhu, Ning Zhu, Sixue Chen · 2014 · Molecular & Cellular Proteomics
- Multi-level omics analysis in a murine model of dystrophin loss and therapeutic restorationThomas C. Roberts, Henrik J. Johansson, Graham McClorey, Caroline Godfrey, K. Emelie M. Blomberg, Thibault Coursindel, Michael John Gait, C.I. Edvard Smith, Janne Lehtiö, Samir EL Andaloussi et al. · 2015 · Human Molecular Genetics
- Proteomic and Metabolomic Characterization of a Mammalian Cellular Transition from Quiescence to ProliferationHo‐Joon Lee, Mark P. Jedrychowski, Arunachalam Vinayagam, Ning Wu, Ng Shyh‐Chang, Yanhui Hu, Chua Min-Wen, Jodene K. Moore, John M. Asara, Costas Andreas Lyssiotis et al. · 2017 · Cell Reports
- Integrated Analysis of Transcriptomic, miRNA and Proteomic Changes of a Novel Hybrid Yellow Catfish Uncovers Key Roles for miRNAs in HeterosisGuosong Zhang, Jie Li, Jiajia Zhang, Xia Liang, Xinyu Zhang, Tao Wang, Shaowu Yin · 2019 · Molecular & Cellular Proteomics
- High-Resolution In Vivo Identification of miRNA Targets by Halo-Enhanced Ago2 Pull-DownXiaoyi Li, Yuri Pritykin, Carla P. Concepcion, Yuheng Lu, Gaspare La Rocca, Minsi Zhang, Bryan King, Peter J. Cook, Yu Wah Au, Olesja Popow et al. · 2020 · Molecular Cell
- Chemical isotope labeling for quantitative proteomicsXiaobo Tian, Hjalmar P. Permentier, Rainer Bischoff · 2021 · Mass Spectrometry Reviews
- The FDA-approved drug Alectinib compromises SARS-CoV-2 nucleocapsid phosphorylation and inhibits viral infection in vitroTomer M. Yaron, Brook E. Heaton, Tyler M. Levy, Jared Lee Johnson, Tristan X. Jordan, Benjamin M. Cohen, Alexander Kerelsky, Ting-Yu Lin, Katarina M. Liberatore, Danielle K. Bulaon et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- The p97-UBXD8 complex regulates ER-Mitochondria contact sites by altering membrane lipid saturation and compositionRakesh Ganji, João A. Paulo, Yuecheng Xi, Ian Kline, Jiang Zhu, Christoph Stephan Clemen, Conrad Chris Weihl, John G. Purdy, Steven P. Gygi, Malavika Raman · 2023 · Nature Communications
- Compositional Proteomics: Effects of Spatial Constraints on Protein Quantification Utilizing Isobaric TagsJonathon J. O’Brien, Jeremy D. O’Connell, João A. Paulo, Sanjukta Guha Thakurta, Christopher M. Rose, Michael P. Weekes, Edward L. Huttlin, Steven P. Gygi · 2017 · Journal of Proteome Research
- A PDGFRα-driven mouse model of glioblastoma reveals a stathmin1-mediated mechanism of sensitivity to vinblastineHyun Jung Jun, Vicky A. Appleman, Hua‐Jun Wu, Christopher M. Rose, Javier J. Pineda, Alan T. Yeo, Bethany Delcuze, Charlotte Lee, Aron Gyuris, Haihao Zhu et al. · 2018 · Nature Communications
- Co-option of Plasmodium falciparum PP1 for egress from host erythrocytesAditya S. Paul, Alexandra Miliu, João A. Paulo, Jonathan M. Goldberg, Arianna M. Bonilla, Laurence Berry, Marie Seveno, Catherine Braun‐Breton, Aziz L. Kosber, Brendan Elsworth et al. · 2020 · Nature Communications
- Improved isobaric tandem mass tag quantification by ion mobility mass spectrometryRobert M. Sturm, Christopher B. Lietz, Lingjun Li · 2014 · Rapid Communications in Mass Spectrometry
- RTN4 Knockdown Dysregulates the AKT Pathway, Destabilizes the Cytoskeleton, and Enhances Paclitaxel-Induced Cytotoxicity in CancersGopal P. Pathak, Rashmi Shah, Barry E. Kennedy, John Patrick Murphy, Derek R. Clements, Prathyusha Konda, Michael Giacomantonio, Zhaolin Xu, Isabel R. Schlaepfer, Shashi Ashok Gujar · 2018 · Molecular Therapy
- Quantitative Accuracy and Precision in Multiplexed Single-Cell ProteomicsClaudia Ctortecka, Karel Stejskal, Gabriela Krššáková, Sasha Mendjan, Karl Mechtler · 2021 · Analytical Chemistry
- A comprehensive proteomic and phosphoproteomic analysis of yeast deletion mutants of 14‐3‐3 orthologs and associated effects of rapamycinJoão A. Paulo, Steven P. Gygi · 2014 · PROTEOMICS
- Pseudomonas aeruginosa Proteome under Hypoxic Stress Conditions Mimicking the Cystic Fibrosis LungKarthik Shantharam Kamath, Christoph Krisp, Joel M. Chick, Dana Pascovici, Steven P. Gygi, Mark P. Molloy · 2017 · Journal of Proteome Research
- An evolutionarily conserved uORF regulates PGC1α and oxidative metabolism in mice, flies, and bluefin tunaPhillip A. Dumesic, Daniel F. Egan, P. Gut, Mei T. Tran, Alice Parisi, Nirmalya Chatterjee, Mark P. Jedrychowski, Margherita Paschini, L. Kazak, Sarah E. Wilensky et al. · 2019 · Cell Metabolism
- Mass spectrometry-based proteomics and peptidomics for systems biology and biomarker discoveryRobert Cunningham, Di Ma, Lingjun Li · 2012 · Frontiers in Biology
- Carboxyl-Ester Lipase Maturity-Onset Diabetes of the Young Is Associated With Development of Pancreatic Cysts and Upregulated MAPK Signaling in Secretin-Stimulated Duodenal FluidHelge Ræder, Fiona Elizabeth McAllister, Erling Tjora, Shweta Bhatt, Ingfrid S. Haldorsen, Jiang Hu, Stefan M. Willems, Mette Nåmdal Vesterhus, Abdelfattah El Ouaamari, M. Liu et al. · 2013 · Diabetes
- Distinct temporal requirements for autophagy and the proteasome in yeast meiosisFuping Wen, Yueshuai Guo, Yang Hu, Wei-Xiao Liu, Qian Wang, Yuan-Ting Wang, Haiyan Yu, Chao‐Ming Tang, Jun Yang, Tao Zhou et al. · 2016 · Autophagy
- HDAC6 differentially regulates autophagy in stem-like versus differentiated cancer cellsTanveer Sharif, Emma Martell, Cathleen Dai, Mohammad Saleh Ghassemi-Rad, Mark Robert Hanes, Patrick J. Murphy, Nandini Nagarajan Margam, Hirendrasinh B. Parmar, Carman Anthony Giacomantonio, Roy Duncan et al. · 2018 · Autophagy
- Automated 16-Plex Plasma Proteomics with Real-Time Search and Ion Mobility Mass Spectrometry Enables Large-Scale Profiling in Naked Mole-Rats and MiceAleksandr Gaun, Kaitlyn N. Lewis Hardell, Niclas Olsson, Jonathon J. O’Brien, Sudha Gollapudi, Megan Smith, Graeme C. McAlister, Romain Huguet, Robert Keyser, Rochelle Buffenstein et al. · 2021 · Journal of Proteome Research
- Enhanced Sample Multiplexing for Nitrotyrosine-Modified Proteins Using Combined Precursor Isotopic Labeling and Isobaric TaggingRenã A. S. Robinson, Adam R. Evans · 2012 · Analytical Chemistry
- Quantitative Proteomic Analysis Reveals Metabolic Alterations, Calcium Dysregulation, and Increased Expression of Extracellular Matrix Proteins in Laminin α2 Chain–deficient MuscleBruno Menezes de Oliveira, Cíntia Yuri Matsumura, Cibely Cristine Fontes de Oliveira, Kinga I. Gawlik, Helena Acosta, Patrik Wernhoff, Madeleine Durbeej · 2014 · Molecular & Cellular Proteomics
- Web-Based Search Tool for Visualizing Instrument Performance Using the Triple Knockout (TKO) Proteome StandardJeremy P. Gygi, Qing Yu, José Navarrete-Perea, Ramin Rad, Steven P. Gygi, João A. Paulo · 2018 · Journal of Proteome Research
- Perfluorinated alkyl substances affect the growth, physiology and root proteome of hydroponically grown maize plantsLeonard Barnabas Ebinezer, Ilaria Battisti, Nisha Sharma, Laura Ravazzolo, Lokesh Ravi, Anna Rita Trentin, Giuseppe Barion, Anna Panozzo, Stefano Dall’Acqua, Teofilo Vamerali et al. · 2022 · Journal of Hazardous Materials
- An RNA damage response network mediates the lethality of 5-FU in colorectal cancerJung-Kuei Chen, Karl A. Merrick, Yi Wen Kong, Anita Izrael-Tomasevic, George M. Eng, Erika D. Handly, Jesse Christopher Patterson, Ian Gordon Cannell, Lucía Suárez-López, Aaron M. Hosios et al. · 2024 · Cell Reports Medicine
- Global combined precursor isotopic labeling and isobaric tagging (cPILOT) approach with selective MS 3 acquisitionAdam R. Evans, Renã A. S. Robinson · 2013 · PROTEOMICS
- Proteomics Reveals Age-Related Differences in the Host Immune Response to SepsisZhiyun Cao, Sachin P. Yende, John A. Kellum, Derek C. Angus, Renã A. S. Robinson · 2013 · Journal of Proteome Research
- Mass Defect-Based Pseudo-Isobaric Dimethyl Labeling for Proteome QuantificationYuan Zhou, Yichu Shan, Qi Wu, Shen Zhang, Lihua Zhang, Yukui Zhang · 2013 · Analytical Chemistry
- Discovery of novel plasma biomarkers for future incident venous thromboembolism by untargeted synchronous precursor selection mass spectrometry proteomicsSøren Beck Jensen, Kristian Hindberg, Terry Solomon, Erin N. Smith, John D. Lapek, David J. Gonzalez, Nadezhda Latysheva, Kelly A. Frazer, Sigrid Kufaas Brækkan, John‐Bjarne Hansen · 2018 · Journal of Thrombosis and Haemostasis
- Evaluation of iTRAQ and SWATH-MS for the Quantification of Proteins Associated with Insulin Resistance in Human Duodenal Biopsy SamplesSylvie Bourassa, Frédéric Fournier, Benjamin Nehmé, Isabelle Kelly, André Tremblay, Valéry Lemelin, Benoı̂t Lamarche, Patrick Couture, Arnaud Droit · 2015 · PLoS ONE
- An mRNA processing pathway suppresses metastasis by governing translational control from the nucleusAlbertas Navickas, Hosseinali Asgharian, Juliane Winkler, Lisa Fish, Kristle Garcia, Daniel Markett, Martin Dodel, Bruce Culbertson, Sohit Miglani, Tanvi V. Joshi et al. · 2023 · Nature Cell Biology
- Generation of Multiple Reporter Ions from a Single Isobaric Reagent Increases Multiplexing Capacity for Quantitative ProteomicsCraig R. Braun, Gregory H. Bird, Martin Wühr, Brian K. Erickson, Ramin Rad, Loren D. Walensky, Steven P. Gygi, Wilhelm Haas · 2015 · Analytical Chemistry
- The Glial Cell-Derived Neurotrophic Factor (GDNF)-responsive Phosphoprotein Landscape Identifies Raptor Phosphorylation Required for Spermatogonial Progenitor Cell ProliferationMin Wang, Yueshuai Guo, Mei Wang, Tao Zhou, Yuanyuan Xue, Guihua Du, Xiangjin Wei, Jing Wang, Lin Qi, Hao Zhang et al. · 2017 · Molecular & Cellular Proteomics