Proteoform: a single term describing protein complexity

Cited by (1,037)

Items 901–1,000 of 1,037

1. Refining proteoform characterization in biopharmaceuticals: A paradigm for the impact of pI markers and carrier ampholytes in imaged capillary isoelectric focusing tandem mass spectrometry.
   Teresa Kwok, She-Lin Chan, Niusheng Xu, Tie-Min Huang, Tao Bo · 2025 · Journal of chromatography. B, Analytical technologies in the biomedical and life sciences
2. RAGPPI: Retrieval-Augmented Generation Benchmark for Protein-Protein Interactions in Drug Discovery
   Youngseung Jeon, Zi-Wen Li, T. Li, J. Chang, Morteza Ziyadi, Xiang 'Anthony Chen · 2025 · Conference of the European Chapter of the Association for Computational Linguistics
3. Meeting Report: The Japanese–German Symposium on the “Advancement and Application of Proteoform‐Centric Proteomics” (Kyoto, Japan, 2024)
   Nobuaki Takemori, Philipp T. Kaulich, Jan Hahn, Hartmut Schlüter, Naoyuki Sugiyama, Kazuya Tsumagari, Yasushi Ishihama, S. Fuchs, Mio Iwasaki, Franz-Josef Müller et al. · 2025 · Proteomics
4. PyTDC: A multimodal machine learning training, evaluation, and inference platform for biomedical foundation models
   Alejandro Velez-Arce, Caraballo, Jesus, Marinka Žitnik · 2025 · arXiv (Cornell University)
5. Native Top-Down Proteomics of Endogenous Protein Complexes Enabled by Online Two-Dimensional Liquid Chromatography
   Matthew S. Fischer, Holden T. Rogers, Emily A. Chapman, Song Jin, Ying Ge · 2025 · bioRxiv
6. In-depth characterization of S-glutathionylation in ventricular myosin light chain 1 across species by top-down proteomics
   Emily A. Chapman, Holden T. Rogers, Zhan Gao, Hsin‐Ju Chan, Francisco J. Alvarado, Ying Ge · 2025 · Journal of Molecular and Cellular Cardiology
7. The Proteoform Program of Life: Deciphering Evolution at the Protein Level.
   Neil L. Kelleher · 2025 · Journal of Proteome Research
8. Deciphering Proteoform Landscape of Mammary Carcinoma by Top-Down Proteomics
   Samantha J. Knott, Trisha Tucholski, Harini Josyer, David R. Inman, Andreas Friedl, Yanlong Zhu, Ying Ge, Suzanne M. Ponik · 2025 · Journal of Proteome Research
9. Proteo-SAFARI: An R Application for Identification of Fragment Ions in Top–Down MS/MS Spectra of Proteins
   Michael B. Lanzillotti, Sean D. Dunham, Kyle J. Juetten, Jennifer S. Brodbelt · 2025 · Journal of Proteome Research
10. Moonlighting Proteins of Human and Some Other Eukaryotes. Evolutionary Aspects
    Shishkin Ss · 2025 · Biochemistry (Moscow)
11. Reactive Byproducts of Plant Redox Metabolism and Protein Functions
    Elena I. Sharova, Sergei S. Medvedev · 2024 · Acta Naturae
12. In-depth site-specific glycoproteomic analysis reveals ER-resident protein PDI regulating wheat yellow mosaic virus infection.
    Jia-Qian Yang, Jiaqian Liu, Ying Liu, Yingjie Zhao, Xia Wang, Jian Yang, Keqi Tang · 2024 · International Journal of Biological Macromolecules
13. Detection of differential bait proteoforms through immunoprecipitation-mass spectrometry data analysis
    Savvas Kourtis, Damiano Cianferoni, Luis G. Serrano, Sara Sdelci · 2024 · Scientific Data
14. H3K18 & H3K23 acetylation directs establishment of MLL-mediated H3K4 methylation
    Geoffrey C. Fox, Karl F. Poncha, B. R. Smith, Lara N. van der Maas, Nathaniel N. Robbins, Bria Graham, Jill M. Dowen, B. Strahl, Nicolas L. Young, Kanishk Jain · 2024 · bioRxiv
15. A novel 2D‐electrophoresis method for the simultaneous visualization of phosphorylated and O‐GlcNAcylated proteoforms of a protein
    Nathan Bulangalire, C. Claeyssen, Sana Douffi, O. Agbulut, C. Cieniewski-Bernard · 2024 · Electrophoresis
16. Large- W limit of the knapsack problem
    Mobolaji Williams · 2024 · Physical Review E
17. Adding Color to Mass Spectra of Biopolymers: Charge Determination Analysis (CHARDA) Assigns Charge State to Every Ion Peak
    Yaroslav Lyutvinskiy, Konstantin O. Nagornov, Anton N. Kozhinov, Natalia Gasilova, Laure Menin, Zhaowei Meng, Xuepei Zhang, Amir Ata Saei, Tingting Fu, Julia Chamot‐Rooke et al. · 2024 · Journal of the American Society for Mass Spectrometry
18. The response to fasting and refeeding reveals functional regulation of lipoprotein lipase proteoforms
    Pere Carulla, Miriam Badia-Villanueva, S. Civit, M. Carrascal, J. Abian, D. Ricart-Jané, M. Llobera, Albert Casanovas, M. López-Tejero · 2023 · Frontiers in Physiology
19. A Proteomics-Based Identification of the Biological Networks Mediating the Impact of Epigallocatechin-3-Gallate on Trophoblast Cell Migration and Invasion, with Potential Implications for Maternal and Fetal Health
    Yueh-Chung Chen, Chen‐Chung Liao, Hao‐Ai Shui, Pei-Hsuan Huang, Li‐Jane Shih · 2023 · Proteomes
20. Native top-down proteomics reveals EGFR–ERα signaling crosstalk in breast cancer cells dissociates NUTF2 dimers to modulate ERα signaling and cell growth
    J. Yates, Fabio P. Gomes, Kenneth R. Durbin, Kevin L. Schauer, J. Nwachukwu, Robin J. Russo, J. Njeri, Anthony J. Saviola, Daniel Mcclatchy, J. Diedrich et al. · 2023 · Research Square
21. Rationally designed synthetic peptide as versatile calibrant to improve the accuracy of protein sequence analysis using MALDI mass spectrometry
    Lingpeng Zhan, Yanyi Huang, Guanbo Wang · 2023 · Chinese Chemical Letters
22. An angled-shape tip-based strategy for highly sensitive proteomic profiling of a low number of cells.
    Hong-Xian Zhao, Yongle Chen, Hang Li, Yang-Jun Zhang, Wan-Jun Zhang, Wei-Jie Qin · 2023 · Analytical Methods
23. Bromodomain-containing Protein 4 Regulates Innate Inflammation in Airway Epithelial Cells via Modulation of Alternative Splicing
    Morgan W. Mann, Yao Fu, Xiaofan Xu, David S. Roberts, Yi Li, Jia Zhou, Ying Ge, A. Brasier · 2023 · bioRxiv
24. Organism-wide secretome mapping uncovers pathways of tissue crosstalk in exercise
    Wei Wei, N. Riley, Xuchao Lyu, Xiao-Tao Shen, Jing Guo, Meng Zhao, Maria Dolores Moya-Garzon, Himanish Basu, A. Tung, Veronica L. Li et al. · 2022 · bioRxiv
25. Direct Imaging and Identification of Proteoforms up to 70 kDa from Human Tissue
    Pei Su, J. McGee, Kenneth R. Durbin, M. Hollas, Man-Xi Yang, Elizabeth K. Neumann, Jamie L. Allen, Bryon S. Drown, F. Butun, Joseph B. Greer et al. · 2021 · bioRxiv
26. Adsorptive Microtiter Plates As Solid Supports in Affinity Purification Workflows
    F. Klont, M. Kwiatkowski, A. Faiz, T. van den Bosch, S. Pouwels, F. Dekker, N. T. ten Hacken, P. Horvatovich, R. Bischoff · 2021 · Journal of Proteome Research
27. Simultaneous monitoring of monoclonal antibody variants by strong cation-exchange chromatography hyphenated to mass spectrometry to assess biosimilar-ity of rituximab-based biotherapeutics
    C. Huber, Fiammetta Di Marco, Thomas Berger, Wolfgang Esser-Skala, E. Rapp, Christof Regl · 2021
28. Tissue Specificity Based Isoform Function Prediction
    Guoxian Yu, Qiuyue Huang, Xiangliang Zhang, Maozu Guo, Jun Wang · 2021 · IEEE Transactions on Computational Biology and Bioinformatics
29. Introductory Chapter: Proteoforms
    Xianquan Zhan · 2020 · IntechOpen eBooks
30. Protocol for analysis of glycoproteomics LC-MS data using GlycReSoft
    Joshua Klein, Joseph Zaia · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
31. Secrets of cardiac remodeling revealed in the secretome
    M. Lindsey, Rebekah L. Gundry · 2020 · Circulation
32. Recent Insights into Plant-Pathogens Interactions through Proteomics Approaches
    Shan-Shan Wang · 2020 · IOP Conference Series: Materials Science and Engineering
33. Proteoforms: General Concepts and Methodological Process for Identification
    Jucélia da Silva Araújo, Olga Lima Tavares Machado · 2020 · IntechOpen eBooks
34. Ultrahigh Performance Mass Spectrometry in Clinical Chemistry: A Taste of the Future?
    Didia Coelho Graça, P. Lescuyer · 2019 · Clinical Chemistry
35. Mass Spectrometry Applications
    Carla Soler, Josep Rubert, Jordí Mañes · 2012 · Springer eBooks
36. Future Science Group
    ScienceOpen Admin · 2019
37. Community venomics reveals intra-species variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey
    D. Petráš, Benjamin-Florian Hempel, B. Göçmen, M. Karış, G. Whiteley, S. Wagstaff, Paul Heiss, N. Casewell, A. Nalbantsoy, R. Süssmuth · 2018
38. PathwayMatcher: proteoform-centric network construction enables fine-granularity multi-omics pathway mapping
    Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, A. Fabregat, Stefan Johansson, P. Njølstad, Harald Barsnes, H. Hermjakob, Marc Vaudel · 2018 · bioRxiv
39. IDPology of the living cell: intrinsic disorder in the subcellular compartments of the human cell
    Bi Zhao, Akila Katuwawala, Vladimir Nikolaevich Uversky, Lukasz Kurgan · 2020 · Cellular and Molecular Life Sciences
40. Holism and Reductionism in Physiology
    I. Larina, A. M. Nosovsky, V. Rusanov · 2022 · Human Physiology
41. Quantitative Top‐Down Proteomics: A Review
    Kellye A. Cupp‐Sutton, Mai A. Atallah, Zhitao Zhao, Samin Anjum, Trishika Chowdhury, Anju Teresa Sunny, Patrycja Szamweber, Si Wu · 2026 · Mass Spectrometry Reviews
42. From Identification to Integration: Twenty-Five Years of Proteomics and Metabolomics through the Pages of the Journal of Proteome Research
    John R. Yates, Éva Csősz, Claire E. Eyers, Jennifer Geddes‐McAlister, Elaine C. Holmes, Ryan Kelly, Thomas Kislinger, Huilin Li, Magnus Palmblad, Suman Siddharth Thakur · 2026 · Journal of Proteome Research
43. Keeping It Native: Non‐Denaturing Approaches to Top‐Down Protein Mass Spectrometry
    Michael Xiao, Edvaldo Vasconcelos Soares Maciel, Frederik Lermyte, Owen S. Skinner · 2026 · Mass Spectrometry Reviews
44. Scalable proteomics with multiDIA resolves proteoforms in neurodegenerative disease
    Orhun Kok, Corinna Friedrich, Kirsten Altig, Derek H. Oakley, Bradley T. Hyman, Mahlon A. Collins, N. Slavov · 2026 · bioRxiv
45. Safe and efficient intracellular delivery of functional antibodies into cultured neural cells shows a role for Alzheimer’s-relevant tau phosphorylation in cell integrity
    Kirsten L. Viola, Brett A. Chromy, Raghad Nowar, Mary P. Lambert, Klein William L. · 2026 · Frontiers in Dementia
46. Integrated Top-Down Proteomics for Comprehensive Proteome Analysis at the Proteoform Level
    Luke A. Farrell, Breyer Woodland, Aiden Brennan, Jens R. Coorssen, Matthew B. O’Rourke, Matthew Paul Padula · 2026 · Proteomes
47. Proteomics in Antitumor Drug Target Discovery, Toxicity, Resistance, and Precision Oncology
    Qian Zhong, 吴秀丽, Emilia Wiecheć, Yulu Yang, 廖明万, Hongqing Zhou, Shiqing Gao, Yangqiu Li, Shuhong Luo, Ling Xu · 2026 · Drug Design Development and Therapy
48. High-Multiplex Proteomics: Analytical Trade-Offs and a Practical Selection Framework for Emerging Platforms
    OH Okojie, Ana Checa-Ros, Luis D’Marco · 2026 · Proteomes
49. Multi-omics integration of proteomics and metabolomics in pediatric health and disease
    Andrei M. Matusa, David Tweddell, Mark Daley, David B. O’Gorman, Douglas D. Fraser · 2026 · Communications Medicine
50. Gel-Confined Rolling-Circle Amplification Enables Sensitive Single-Cell Proteoform Analysis
    Lu-Yao Zhao, Yan-Jun Yang, Yao-Chao Zheng, Yu-Hao Zhang, Zheng-Fu Huang, William Teng, Lucas Yatcyshyn, J. Cheong, Jonathan Arnold, Jin Xie et al. · 2026
51. A Streamlined One-Pot Extraction Method Enables High-Sensitivity Top-Down Proteomic Characterization of Phospholamban from Biopsy-Scale Cardiac Tissue
    Isabella R. Clemmer, Holden T. Rogers, Mallory C. Wilson, Zhan Gao, Hsin‐Ju Chan, Zachery R. Gregorich, Farhan Raza, Ying Ge · 2026 · Journal of the American Society for Mass Spectrometry
52. ProteoformTracker: an interactive tool for planning proteoform detectability in top-down and middle-down proteomics
    Araf Mahmud, Zhihao Zhang, Si Wu, Chen Huang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
53. MALDI-Based Multiomics and Spatial Molecular Profiling—Principles, Integrated Workflows, Biomedical Applications, and Future Perspectives: A Systematic Review
    Dorota Bartusik‐Aebisher, Izabella Wilk, Blassan Plackal Adimuriyil George, David Aebisher · 2026 · Biophysica
54. Sexual Dimorphism and Intraspecific Toxin Variation in Crotalus durissus terrificus Venom: Insights from Proteomics, Peptidomics, and Structural Modeling
    Jackson Gabriel Miyamoto, Jackelinne Y. Hayashi, Giuseppe G. F. Leite, Sávio Stefanini Sant’Anna, Hang Fai Kwok, Richard Hemmi Valente, Anita Mitico Tanaka-Azevedo, Alexandre K. Tashima · 2026 · Journal of Proteome Research
55. Revealing distinctive traits of individual proteins
    A. J. Heck · 2026 · Nature Methods
56. From proteome definition to modern proteomics: Mass spectrometry and emerging affinity-based platforms including SomaScan, Olink PEA, and Nautilus voyager™
    Dimitra Papatziamou, Aman Singh, Mehul V. Makwana, Sandip K. Patel · 2026 · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
57. Advances in Sample Preparation for Protein Top-Down Mass Spectrometry
    Meng ZHANG, Jieying Xue, Shirui Yang, Yongliang YU, Zheyi LIU, Fangjun WANG · 2026 · Analysis and Testing Technology and Instruments
58. Beyond Protein Abundance: Proteoform Diversity and Phosphoproteome Remodeling in Maize (Zea mays L.) Responding to Drought and Heat Stresses
    Jan Bocianowski · 2026 · Proteomes
59. A Draft Map of E. coli Proteoforms
    Jorge A. Colón-Rosado, Fei Fang, Liangliang Sun · 2026 · Analytical Chemistry
60. Freely available genomic datasets for atrial fibrillation research: current resources and analytical pipeline
    Meri Gjika, Agnese Sbrollini, Vincenzo Lucio Caputo, Sara Paratico, Emanuela Teresina Locati, Laura Burattini · 2026 · Frontiers in Genetics
61. Proteoformics-driven new concept of human growth hormone in clinical endocrinology
    Qi Zhang, Yu-Chen Ma, Ying Liu, Arshad Ali, Yan Wang, Fang Zhang, Liang Chen, Xian-Quan Zhan · 2026 · Frontiers in Endocrinology
62. Computational Mass Spectrometry Imaging in the Era of AI
    Timothy J. Trinklein, Mithunjha Anandakumar, Hsi‐Chun Chao, Marisa Asadian, Dharmeshkumar S. Parmar, Jonathan V. Sweedler, Fan Lam · 2026 · Chemical Reviews
63. Dscam alternative splicing tunes intestinal immunity and microbiota homeostasis in the Chinese mitten crab.
    Zi-Feng Wang, Chengyu Lv, Jinming Chen, Kaimin Zhou, Qun Wang, Youting Zhu, Wei-Wei Li · 2026 · Fish and Shellfish Immunology
64. Analysis of Osteocalcin Hormone Proteoforms with Vitamin D Deficiency in Patients with Diabetes Mellitus Using Multiple-Reaction Monitoring–Mass Spectrometric Immunoassay Approach
    Refat M. Nimer, H. Benabdelkamel, Afshan Masood, Maha Al Mogren, S. S. Joy, Anas M. Abdel Rahman, A. Alfadda · 2026 · Methods and Protocols
65. Advances in Decoding Bacterial N-Terminal Proteoforms: Technologies, Challenges, and Functional Insights
    Valdes Snauwaert, Petra Van Damme · 2026 · Microorganisms
66. ProtSyntax: a protein large language model for decoding post-translational modification syntax and function
    Yi-Yu Lin, Jiahui Wu, You Zhou, Xin-Ye Ni, Shan Chang, Jun Ding, Yan Wang, Xin Gao, Sen Yang · 2026 · bioRxiv
67. Solvent Interaction Analysis: A New Lens for Protein Structure and Diagnostics
    Boris Y. Zaslavsky, Mark Stovsky, Vladimir Nikolaevich Uversky · 2026 · International Journal of Molecular Sciences
68. Improved Protein Identification in Native Ambient Mass Spectrometry by the Integration of Proton Transfer Charge Reduction and Higher-Energy Collision Dissociation (PTCR-HCD MS3)
    Rebecca L. Edwards, Oliver J. Hale, Sarah Vickers, Helen J. Cooper · 2026 · Journal of the American Society for Mass Spectrometry
69. Top-Down versus Bottom-Up Proteomics in Highly Sensitive LC-MS-Based Profiling of Limited Samples
    Yunfan Gao, Michal Greguš, James C. Kostas, Anne‐Lise Marie, Alexander R. Ivanov · 2026 · Analytical Chemistry
70. Integrative Proteomic Analysis Implicates Inhibition of Intracellular Protein Trafficking in Therapy-Induced Migrastasis in Prostate Cancer
    Wei-Ning Chen, Saadyeh Rashidi, H. Law, Fang-Fang Qiao, Johnny W. Zigmond, Katelyn L. O'Neill, Nicholas T. Woods, C. Guda, Raymond C. Bergan · 2026 · bioRxiv
71. From Method-Defined Signals to Reference Measurement Procedures: Two Decades of Mass Spectrometry-Based ProGRP Quantification
    Donatella Coradduzza, Emanuela Azara, Anna La Salvia, Serenella Medici, Ciriaco Carru, Troy D. Wood, Giuseppe Fanciulli · 2026 · Journal of Proteome Research
72. Deep Proteomic Analysis With Machine Learning Identifies Aqueous Humor Biomarkers of ADAMTSL4-associated Congenital Ectopia Lentis
    Xin-Yao Chen, Xin Shen, Wan-Nan Jia, Ya-Lei Wang, Qiu-Yi Huo, Yan-Bo Xiao, Yu-Lin Zhang, Linzhao Li, Xuqing Gao, G. A et al. · 2026 · Investigative Ophthalmology and Visual Science
73. Proteoform Detection Across 17,000 Single Nuclei From Differentiating Skin Keratinocytes
    Kanchustambham Vijayalakshmi, Indira Plá, Tian Xu, Pei Su, Nickolas P. Fisher, Michael A. R. Hollas, Paulina Markiv, Uday Agarwal, Monika Lysakowska, Jared O. Kafader et al. · 2026 · Molecular & Cellular Proteomics
74. MS-compatible hydrophobic interaction chromatography of intact proteins using long-ligand stationary phases.
    Chris Wike, Ali S. Alshami, Matthew S. Fischer, Akhil Pullela, Ying Ge · 2026 · Journal of Chromatography A
75. Traditional Chinese Medicine in Modulating Protein Glycosylation: New Perspectives and Molecular Mechanisms for Cancer Treatment
    Hong-Yu Zhang, Xueyan Zhen, Tao Jiang, Yan Ren · 2026 · Glycoscience & Therapy
76. Epigenetic Modifications are Instrumental for Improving Overall Research and Management of Osteosarcoma in the Framework of 3P Medicine
    Arshad Ali, Ayaz Ali, Yu-Ping Zhang, Zheng Fang, Xian-Quan Zhan · 2026 · Journal of Neuro and Oncology Research
77. Characterization of the biofilm landscape of Bacillus subtilis by spatial microproteomics
    Kevin J. Zemaitis, Mo-Wei Zhou, Sarah M. Yannarell, J. Fulcher, Arunima Bhattacharjee, Marija Veličković, David J. Degnan, E. Shank, C. Anderton, William R. Kew et al. · 2026 · bioRxiv
78. Targeted Analysis of >1500 Plasma Proteoforms via Individual Ion Mass Spectrometry
    Aniel Sanchez, I. Pla, Katrina N. Peterson, V. White, Troy D. Fisher, M. Hollas, Taojunfeng Su, Nhat Hoang Van Le, Claire Harrington, P. Cravedi et al. · 2026 · bioRxiv
79. A data reduction workflow for mass spectrometry proteoform testing in the clinical laboratory: from antithrombin peaks to diagnosis
    M. Kruijt, M. E. de la Morena-Barrio, J. Corral, C. Cobbaert, L. Ruhaak · 2026 · Clinical Chemistry and Laboratory Medicine
80. Comprehensive online two-dimensional nanoLCxCZE-MS for deep top-down proteomics
    Tobias Waldmann, Philipp T. Kaulich, A. Tholey, C. Neusüß · 2026 · bioRxiv
81. Task-Specialized Protein Language Models Decode the Sequence Grammar of Post-Translational Modification Sites
    Subinoy Adhikari, Jagannath Mondal · 2026 · bioRxiv
82. Top-Down Sequencing of Intact Proteoforms Using the timsOmni Mass Spectrometer: Accurate Determination of Co-Occurring Histone Modifications
    Francis Berthias, Nurgül Bilgin, Athanasios Smyrnakis, E. Le Boiteux, Mariangela Kosmopoulou, C. Albers, Detlev Suckau, Jasmin Mecinović, D. Papanastasiou, O. N. Jensen · 2026 · bioRxiv
83. Novel approaches to functional studies of stress-related proteins in wheat and barley: Genetic engineering, proteoforms, organellar proteomics, interactomics and proxiomics
    K. Kosová, K. Sergeant, Xuan Xu, Tereza Nesporova, P. Vítámvás, Miroslav Klíma, I. Prášil, J. Ovesná, J. Renaut · 2026 · Plant Stress
84. Human Coronavirus 229E Infection Alters Histone Proteoforms
    Ashley N. Ives, Stephanie M. Thibert, Madelyn R. Berger, Matthew J. Gaffrey, Hugh D. Mitchell, Sarai M. Williams, Mowei Zhou, Katrina M. Waters, Amy C. Sims, Tong Zhang · 2026 · Journal of Proteome Research
85. Pan‐Modification Proteoformics: A Framework for Decoding Proteomic Complexity in Health and Disease
    Yang Yang, Wenzhi Guo, Jing-Hua Yang · 2026 · Barrier Immunity
86. Top-Down Proteomics of Zebrafish Brain Regions Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry
    Mehrdad Falamarzi Askarani, William Poulos, Maryam Rahimzadeh Dashtaki, Fei Fang, Jose Bernardo Cibelli, Liangliang Sun · 2026 · Journal of Proteome Research
87. Top-Down Mass Spectrometry and Its Current Applications in Biomarker Discovery in Aging and Age-Related Diseases
    Eun Ju Lee, H Choi, Ki Ha Min, H W Park, Seung Pil Pack · 2026 · International Journal of Molecular Sciences
88. iPepGen: a modular, immunopeptidogenomic analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidates
    Subina P. Mehta, R. Wagner, Katherine T. Do, James E. Johnson, Feng-Chao Yu, Tyler A. Jubenville, K. Richards, Suzanne Coleman, Flavia E. Popescu, A. Nesvizhskii et al. · 2026 · Genome Biology
89. PSLite Online: A Portable, Modern Web Application to Analyze Top‐Down Mass Spectrometry Fragmentation Data
    Ryan T. Fellers, Joseph B. Greer, Bryan P. Early, M. Hollas, Matthew T. Robey, Neil L. Kelleher, Kenneth R. Durbin · 2026 · Journal of Mass Spectrometry
90. A Proteoform-Resolved Atlas of Human Cardiac Histones
    Zhan Gao, Isabella R. Clemmer, Hsin-Ju Chan, Kwame Osei, Holden T. Rogers, Thomas S. Weir, Matthew S. Fischer, R. Gearhart, Scott J. Price, Yan-Long Zhu et al. · 2026 · Research Square
91. Direct Readout of Multivalent Chromatin Reader-Nucleosome Interactions by Nucleosome Mass Spectrometry
    Alexander S. Lee, Nickolas P. Fisher, M. Marunde, Pei Su, Laiba F. Khan, Ryan J. Ezell, Zachary B. Gillespie, Bria Graham, Hailey F. Taylor, Ugochi C. Onuoha et al. · 2026 · ACS Central Science
92. ProteoformDB: an integrative database for functional roles of proteoforms
    Han-Wen Luo, Sichao Qiu, Mao-Zu Guo, Bei-Bei Xin, Jun Wang, Guo-Xian Yu · 2026 · Database J. Biol. Databases Curation
93. Unlocking the complexity of macromolecular protein heterogeneity of glycoprotein IgE via an optimized online digestion middle-down proteomics approach
    Ruijie Liu, Zixin Liang, Shujun Xia, Yuxiang Luo, Huilin Li · 2026 · Analytica Chimica Acta
94. ProteoForge: An Imputation-Aware Framework for Differential Proteoform Discovery in Bottom-Up Proteomics
    E. Ergin, Agustina Conrrero, Kirsty M. Ferguson, Philipp F. Lange · 2025 · bioRxiv
95. Supporting Medicinal Chemists in Iterative Hypothesis Generation for Drug Target Identification
    Youngseung Jeon, Christopher Hwang, Zi-Wen Li, Taylor Le Lievre, Jesus J. Campagna, Cohn Whitaker, Varghese John, Eunice Jun, Xiang 'Anthony Chen · 2025 · arXiv.org
96. Insights into Missense SNPs on Amyloidogenic Proteins
    Fotios P. Galanis, Avgi E. Apostolakou, Georgia I. Nasi, Zoi I. Litou, Vassiliki A. Iconomidou · 2025 · Proteomes
97. Top‐Down Proteomics and Proteoforms—The Train Speeds Up!
    Philipp T. Kaulich, Hartmut Schlüter, Andreas Tholey · 2025 · PROTEOMICS
98. Post-Translational modifications and proteomic mechanisms underlying substance use disorder.
    Songjukta Chakraborty, Anastasia Dodge, Mason Hochstetler, Ann Jeffers, T. Jarome, Swarup Mitra · 2025 · Neuroscience
99. Toxicology under the umbrella of proteomics and metabolomics
    Joanna Kasprzyk-Pochopień, Wojciech Piekoszewski · 2025 · Bio-Algorithms and Med-Systems
100. AMPK phosphorylation proceeds through hierarchical proteoform cascades revealed by integrated mass spectrometry
     Boris Krichel, Hsin-Ju Chan, Liam Bandura, Zhan Gao, Man Wang, Holden T. Rogers, Sean J. Mcilwain, C. Uetrecht, Ying Ge · 2025 · bioRxiv