Proteoform: a single term describing protein complexity

Cited by (1,034)

Items 601–700 of 1,034

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3. Revealing the Fates of Proteins in the Gas Phase
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4. Puzzle of Proteoform Variety—Where Is a Key?
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5. Multi-omics exploration of biomolecular corona in nanomedicine therapeutics and diagnostics.
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6. Small-Scale Serial Size Exclusion Chromatography (s3SEC) for High Sensitivity Top-Down Proteomics of Large Proteoforms
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7. How Can Proteomics Help to Elucidate the Pathophysiological Crosstalk in Muscular Dystrophy and Associated Multi-System Dysfunction?
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8. Mass spectrometry-based proteomics for advancing solid organ transplantation research
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9. The role of solvation on the conformational landscape of α-synuclein
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10. Growth hormone proteoformics atlas created to promote predictive, preventive, and personalized approach in overall management of pituitary neuroendocrine tumors
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11. Pilot investigation of magnetic nanoparticle–based immobilized metal affinity chromatography for efficient enrichment of phosphoproteoforms for mass spectrometry–based top-down proteomics
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12. Neuronal stress granules as dynamic microcompartments: current concepts and open questions
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13. Mass spectrometry analysis of phosphotyrosine-containing proteins.
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14. Histone H4 proteoforms and post-translational modifications in the Mus musculus brain with quantitative comparison of ages and brain regions
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15. Integrated Proteomics Reveals Alterations in Sarcomere Composition and Developmental Processes during Postnatal Swine Heart Development
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16. Recent advances in characterization of citrullination and its implication in human disease research: from method development to network integration
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17. Strategies for Mass Spectrometry-based Phosphoproteomics using Isobaric Tagging
    Xinyue Liu, Rose Fields, Devin K. Schweppe, João A. Paulo · 2021 · Espert Review of Proteomics
18. Proximity Labeling and Other Novel Mass Spectrometric Approaches for Spatiotemporal Protein Dynamics
    Lindsay K. Pino, B. Schilling · 2021 · Espert Review of Proteomics
19. Intrinsic Disorder in Human Proteins Encoded by Core Duplicon Gene Families
    Nathan W Van Bibber, Cornelia Haerle, Roy Khalife, Guy W. Dayhoff, Vladimir Nikolaevich Uversky · 2020 · The Journal of Physical Chemistry B
20. Agonists of orally expressed TRP channels stimulate salivary secretion and modify the salivary proteome
    J. Houghton, G. Carpenter, Joachim Hans, M. Pesaro, S. Lynham, G. Proctor · 2020 · bioRxiv
21. A Simple Strategy to Eliminate Hexosylation Bias in the Relative Quantification of N‐Glycosylation in Biopharmaceuticals
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22. A database for inventory of proteoform profiles: “2DE‐pattern”
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23. Transcriptome Analysis of In Vitro Fertilization and Parthenogenesis Activation during Early Embryonic Development in Pigs
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24. Challenges of the Human Proteome Project: 10-year Experience of the Russian Consortium.
    A. Archakov, A. Aseev, V. Bykov, A. Grigoriev, V. Govorun, E. Ilgisonis, Y. Ivanov, V. Ivanov, O. Kiseleva, A. Kopylov et al. · 2019 · Journal of Proteome Research
25. The future of protein biomarker research in type 2 diabetes mellitus
    Roel Tans, L. Verschuren, Hans Wessels, S. Bakker, C. Tack, J. Gloerich, A. V. van Gool · 2018 · Espert Review of Proteomics
26. Quantitative top down mass spectrometry identifies proteoforms differentially released during mechanical stimulation of mouse skin
    Francie Moehring, M. Waas, Theodore R. Keppel, Deepali Rathore, Ashley M Cowie, C. Stucky, Rebekah L. Gundry · 2018 · Journal of Proteome Research
27. Online μSEC ² -nRPLC-MS for improved sensitivity of intact protein detection of IEF separated non-human primate cerebrospinal fluid proteins
    Cline, Erika N., Alvarez, Carina, Duan, Jiana, Patrie, Steven M. · 2021
28. Calling the amino acid sequence of a protein/peptide from the nanospectrum produced by a sub-nanometer diameter pore
    Liu, Xiaowen, Dong, Zhuxin, Timp, Gregory · 2022 · Scientific Reports
29. Top-Down Proteomic Analysis of Limited Samples Using Porous Layer Open Tubular Columns and High-Field Asymmetric Ion Mobility Spectrometry Coupled to Mass Spectrometry
    Michal Greguš, Yun-Fan Gao, Kendall R Johnson, Somak Ray, Anne-Lise Marie, Alexander R. Ivanov · 2025 · Analytical Chemistry
30. Platelets mirror changes in the frontal lobe antioxidant system in Alzheimer's disease
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31. StageTip: a little giant unveiling the potential of mass spectrometry-based proteomics
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32. Cysteine-Directed Isobaric Labeling Combined with GeLC-FAIMS-MS for Quantitative Top-Down Proteomics
    Theo Matzanke, Philipp T. Kaulich, Kyowon Jeong, Ayako Takemori, Nobuaki Takemori, Oliver Kohlbacher, A. Tholey · 2025 · Journal of Proteome Research
33. Top-Down Stability of Proteins from Rates of Oxidation (TD-SPROX) Approach for Measuring Proteoform-Specific Folding Stability
    You-Quan Zou, Che-Fan Huang, Grace R Sturrock, Neil L. Kelleher, Michael C. Fitzgerald · 2024 · Analytical Chemistry
34. Assessment of Data-Independent Acquisition Mass Spectrometry (DIA-MS) for the Identification of Single Amino Acid Variants
    Ivo Fierro-Monti, K. Fröhlich, Christian Schori, Alexander Schmidt · 2024 · Proteomes
35. Tandem HILIC-IMAC strategy for simultaneous N-glycoproteomics and phosphoproteomics in aging mouse brain.
    Xinlian Ding, Danyi Shang, Yun Cui, Xue-Fang Dong, Cheng Chen, Yan-Yan Zhao, Xiu-Ling Li, Xin-Miao Liang · 2024 · Journal of Chromatography A
36. Application and prospects of proteomic technology in inflammation: a review
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37. Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease.
    Arby Abood, L. Mesner, Erin D. Jeffery, Mayank Murali, Micah D. Lehe, Jamie Saquing, C. Farber, Gloria M. Sheynkman · 2024 · American Journal of Human Genetics
38. Playing pin‐the‐tail‐on‐the‐protein in extracellular vesicle (EV) proteomics
    Natalie P. Turner · 2024 · Proteomics
39. Exploring Snake Venoms Beyond the Primary Sequence: from Proteoforms to Protein-Protein Interactions.
    C. R. Wang, Lewis O McFarlane, T. Pukala · 2024 · Toxicon
40. A Top-Down Proteomic Assay to Evaluate KRAS4B-Compound Engagement
    R. D'Ippolito, Dana Rabara, Maria Abreu Blanco, Emily O. Alberico, Matthew R. Drew, Nitya Ramakrishnan, Dara Sontan, Stephanie R. T. Widmeyer, Grace M Scheidemantle, S. Messing et al. · 2024 · Analytical Chemistry
41. Inside the chase after those elusive proteoforms
    Vivien Marx · 2024 · Nature Methods
42. Precursor deconvolution error estimation: The missing puzzle piece in false discovery rate in top‐down proteomics
    Kyowon Jeong, Philipp T. Kaulich, Wonhyeuk Jung, Jihyung Kim, Andreas Tholey, Oliver Kohlbacher · 2023 · PROTEOMICS
43. Proteomics approaches – their potential for answering complex questions in meat science research
    E. Huff-Lonergan, S. Lonergan · 2023 · Italian Journal of Animal Science
44. Integrating multiple regulations on enzyme activity: the case of phosphoenolpyruvate carboxykinases
    Bruno E. Rojas, A. Iglesias · 2023 · AoB Plants
45. A hybrid spectral library and protein sequence database search strategy for bottom-up and top-down proteomic data analysis
    Yuling Dai, R. Millikin, Zach Rolfs, Michael R. Shortreed, L. Smith · 2022 · Journal of Proteome Research
46. Proteomics‐based mass spectrometry profiling of SARS‐CoV‐2 infection from human nasopharyngeal samples
    S. Chatterjee, J. Zaia · 2022 · Mass spectrometry reviews (Print)
47. Proteomic Analysis of the Functional Inward Rectifier Potassium Channel (Kir) 2.1 Reveals Several Novel Phosphorylation Sites
    Kyle A. Brown, C. Anderson, L. Reilly, Kunal Sondhi, Ying Ge, L. Eckhardt · 2021 · Biochemistry
48. Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery
    2022
49. Analysis of Pancreatic Extracellular Matrix Protein Post-Translational Modifications via Electrostatic Repulsion-Hydrophilic Interaction Chromatography Coupled with Mass Spectrometry
    Dylan Nicholas Tabang, Yu-Si Cui, Daniel M. Tremmel, Megan Ford, Zihui Li, S. Sackett, J. Odorico, Ling-Jun Li · 2021 · Molecular Omics
50. Next-generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire
    R. Melani, B. D. Des Soye, Jared O. Kafader, E. Forte, M. Hollas, Voislav Blagojevic, F. Negrão, J. McGee, Bryon S. Drown, Cameron Lloyd-Jones et al. · 2021 · medRxiv
51. Proteogenomics Reveals Orthologous Alternatively Spliced Proteoforms in the Same Human and Mouse Brain Regions with Differential Abundance in an Alzheimer’s Disease Mouse Model
    Esdras Matheus Gomes da Silva, Letícia Graziela Costa Santos, F. D. De Oliveira, F. C. de Paula Freitas, Coutinho Parreira Vinícius da Silva, H. D. dos Santos, Raphael Tavares, P. Carvalho, Ana Gisele da Costa Neves-Ferreira, A. Haibara et al. · 2021 · Cells
52. Flexibility of Oxidized and Reduced States of the Chloroplast Regulatory Protein CP12 in Isolation and in Cell Extracts
    Hélène Launay, Hui Shao, Olivier Bornet, François‐Xavier Cantrelle, Régine Lebrun, Véronique Receveur‐Brechot, Brigitte Gontero · 2021 · Biomolecules
53. Connecting ‘multi-omics’ approaches to endogenous protein complexes
    Di Wu, C. Robinson · 2021 · Trends in Chemistry
54. Robustness and Ruggedness of Isoelectric Focusing and Superficially Porous Liquid Chromatography with Fourier Transform Mass Spectrometry
    John R. Corbett, Dana E. Robinson, Steven M. Patrie · 2020 · Journal of the American Society for Mass Spectrometry
55. Quantitative LC-MS proteoform profiling of intact wheat glutenin subunits
    Ray Bacala, Bin-Xiao Fu, H. Perreault, D. Hatcher · 2020
56. Intrinsic disorder in protein sense-antisense recognition.
    Guy W. Dayhoff, M. V. van Regenmortel, V. Uversky · 2020 · Journal of Molecular Recognition
57. SPECTRUM – A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data
    Abdul Rehman Basharat, Kanzal Iman, Muhammad Farhan Khalid, Zohra Anwar, Rashid Hussain, H. Kabir, Maria Tahreem, Anam Shahid, Maheen Humayun, Hira Azmat Hayat et al. · 2019 · Scientific Reports
58. MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics
    Frederik Lermyte, Piotr Dittwald, Jürgen Claesen, Geert Baggerman, Frank Sobott, Peter B. O’Connor, Kris Laukens, Jef Hooyberghs, Anna Gambin, Dirk Valkenborg · 2019 · Analytical Chemistry
59. From niche methods to necessary tools: The growing importance of analytical atomic spectrometry in metal imaging in neuroscience
    E. McAllum, D. Hare · 2019 · Spectrochimica Acta Part B - Atomic Spectroscopy
60. BpForms and BcForms: a toolkit for concretely describing non-canonical polymers and complexes to facilitate global biochemical networks
    Paul F. Lang, Yassmine Chebaro, Xiaoyue Zheng, John A. P. Sekar, Bilal Shaikh, D. Natale, Jonathan R. Karr · 2019 · Genome Biology
61. Top-Down and Intact Protein Mass Spectrometry Data Visualization for Proteoform Analysis Using VisioProt-MS
    Jean Lesné, Marie‐Pierre Bousquet, Julien Marcoux, Marie Locard‐Paulet · 2019 · Bioinformatics and Biology Insights
62. The Challenge to Search for New Nervous System Disease Biomarker Candidates: the Opportunity to Use the Proteogenomics Approach
    Thais Guimarães Martins Nery, E. Silva, Raphael Tavares, F. Passetti · 2018 · Journal of Molecular Neuroscience
63. Origin and Prediction of Highly Specific Bond Cleavage Sites in the Thermal Activation of Intact Protein Ions
    Huixin Wang, Michael G. Leeming, Junming Ho, William A. Donald · 2018 · Chemistry - A European Journal
64. The Plant PTM Viewer, a central resource exploring plant protein modifications. From site-seeing to protein function
    P. Willems, Alison Horne, S. Goormachtig, I. De Smet, Alexander Botzki, F. Van Breusegem, K. Gevaert · 2018 · bioRxiv
65. Variability of Some Milk-Associated Genes and Proteins in Several Breeds of Saudi Arabian Camels
    E. Redwan, Salah Korim, Amro Samra, Y. Saad, Hussein A. Amhedar, V. Uversky · 2018 · The Protein Journal
66. Identification of Single Amino Acid Substitutions in Proteogenomics
    S. Moshkovskii, M. Ivanov, K. G. Kuznetsova, M. Gorshkov · 2018 · Biochemistry (Moscow)
67. Proteomics of Eosinophil Activation
    D. Mosher, Emily M. Wilkerson, Keren B. Turton, Alexander S. Hebert, J. Coon · 2017 · Frontiers in Medicine
68. Following the central dogma: Nanopore sequencing from DNA and RNA to proteins
    Yu-Tong Wang, Qian Han, Yi-Long He, Shumin Deng, Ziwei Huang, Zi-Yan Zhang, Shuaijian Dai, Zhuxin Dong · 2026 · iScience
69. Mass spectrometry-based strategies for membrane protein pharmacology.
    Andrew H. Reiter, A. Fehr, Roberta Florea, Brendan M. Floyd, Dina Schuster · 2025 · TIPS - Trends in Pharmacological Sciences
70. Next-generation leukemia diagnostics: Integrating LC-MS/MS proteomics with liquid biopsy platforms
    Vivek Singh · 2025 · The journal of liquid biopsy
71. Sample preparation and cleanup methods for clinical top-down proteomics
    A. Kamal, A. Carfagno, Cynthia Nagy, L. Fornelli · 2025 · Espert Review of Proteomics
72. Unravelling Post-translational Modification (PTM) Complexity: Advances in Quantitative Histone Proteoform Mass Spectrometry
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73. Post‐Translational Modifications in Cilia and Ciliopathies
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74. Spatial Proteomics towards Cellular Resolution
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75. Proteomic insights into the extracellular matrix: a focus on proteoforms and their implications in health and disease
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76. Combining Native Mass Spectrometry and Proteomics to Differentiate and Map the Metalloform Landscape in Metallothioneins
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77. Post-translational modifications: emerging directors of cell-fate decisions during endoplasmic reticulum stress in Arabidopsis thaliana
    Ethan A. Thibault, Federica Brandizzi · 2024 · Biochemical Society Transactions
78. TopDIA: A Software Tool for Top-Down Data-Independent Acquisition Proteomics
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79. Chronic Pelvic Pain, Vulvar Pain Disorders, and Proteomics Profiles: New Discoveries, New Hopes
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80. Spatially resolved distribution of pancreatic hormones proteoforms by MALDI-imaging mass spectrometry
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81. Multi-pass, single-molecule nanopore reading of long protein strands with single-amino acid sensitivity
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82. Amyloid β Proteoforms Elucidated by Quantitative LC/MS in the 5xFAD Mouse Model of Alzheimer’s Disease
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83. The Glomerulus Multiomics Analysis Provides Deeper Insights into Diabetic Nephropathy.
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84. Enhancing Top-Down Characterization of Membrane Proteoforms with C8-Functional Amine-Bridged Hybrid Monoliths
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85. Establishing 20S Proteasome Genetic, Translational and Post-Translational Status from Precious Biological and Patient Samples with Top-Down MS
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86. N-terminal proteoforms may engage in different protein complexes
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87. Finding haplotypic signatures in proteins
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88. Recent advances in liposome development for studying protein-lipid interactions
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89. Balanced Force Field ff03CMAP Improving the Dynamics Conformation Sampling of Phosphorylation Site
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90. 1DE-MS Profiling for Proteoform-Correlated Proteomic Analysis, by Combining SDS-PAGE, Whole-Gel Slicing, Quantitative LC-MS/MS, and Reconstruction of Gel Distributions of Several Thousands of Proteins.
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91. Interspecies Isobaric Labeling-Based Quantitative Proteomics Reveals Protein Changes in the Ovary of Aedes aegypti Coinfected With ZIKV and Wolbachia
    L. F. C. Ramos, M. Martins, Jimmy Rodriguez Murillo, G. Domont, D. M. D. de Oliveira, F. Nogueira, R. Maciel-de-Freitas, M. Junqueira · 2022 · bioRxiv
92. Host plant adaptation drives changes in Diaphorina citri proteome regulation, proteoform expression and transmission of Candidatus Liberibacter asiaticus, the citrus greening pathogen.
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93. What's in the BAGs? Intrinsic disorder angle of the multifunctionality of the members of a family of chaperone regulators
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94. Proteoforms of the SARS-CoV-2 nucleocapsid protein are primed to proliferate the virus and attenuate the antibody response
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95. Improved alignment and quantification of protein signals in two-dimensional Western blotting.
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96. Analyzing aggregation propensities of clinically relevant PTEN mutants: a new culprit in pathogenesis of cancer and other PTENopathies
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97. Proteoform characterization based on top-down mass spectrometry
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98. Top-down proteomics-a near-future technique for clinical diagnosis?
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99. A next generation setup for pre-fractionation of non-denatured proteins reveals diverse albumin proteoforms each carrying several post-translational modifications
    H. Rhode, P. Můčková, R. Büchler, S. Wendler, B. Tautkus, Michael W Vogel, T. Moore, J. Grosskreutz, A. Klemm, M. Nabity · 2019 · Scientific Reports
100. A multi-modal proteomics strategy for characterizing posttranslational modifications of tumor suppressor p53 reveals many sites but few modified forms
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