Proteoform: a single term describing protein complexity

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Items 401–500 of 1,034

1. Mass spectrometry‐based top‐down and bottom‐up approaches for proteomic analysis of the Moroccan Buthus occitanus scorpion venom
   Khadija Daoudi, C. Malosse, Ayoub Lafnoune, Bouchra Darkaoui, Salma Chakir, J. Sabatier, J. Chamot-Rooke, R. Cadi, N. Oukkache · 2021 · FEBS Open Bio
2. Single-aminoacid discrimination in proteins with homogeneous nanopore sensors and neural networks.
   David Rodriguez-Larrea · 2021 · Biosensors & bioelectronics
3. An Ion Mobility and Gas-Phase Covalent Labeling Study of the Structure and Reactivity of Gaseous Ubiquitin Ions Electrosprayed from Aqueous and Denaturing Solutions
   V. V. Carvalho, Melanie Cheung See Kit, Ian K. Webb · 2020 · Journal of the American Society for Mass Spectrometry
4. New technologies to analyse protein function: an intrinsic disorder perspective
   V. Uversky · 2020 · F1000Research
5. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database
   Yunxiang Dai, Katherine E. Buxton, Leah V. Schaffer, Rachel Miller, Robert J. Millikin, Mark Scalf, Brian L. Frey, Michael R. Shortreed, Lloyd M. Smith · 2019 · Journal of Proteome Research
6. The proteome and its dynamics: A missing piece for integrative multi-omics in schizophrenia
   K. Borgmann-Winter, Kai Wang, Sabyasachi Bandyopadhyay, A. D. Torshizi, I. Blair, C. Hahn · 2019 · Schizophrenia Research
7. Proteoform Analysis to Fulfill Unmet Clinical Needs and Reach Global Standardization of Protein Measurands in Clinical Chemistry Proteomics.
   Y. V. D. van der Burgt, Christa M. Cobbaert · 2018 · Clinics in Laboratory Medicine
8. A standardized framework for circulating blood proteomics
   Xue Cai, P. Geyer, Yasset Pérez-Riverol, G. Omenn, Lianhua Dong, Robert Winkler, Sara Ahadi, Philip Lössl, Xiao-Bo Yu, Cheng Chang et al. · 2025 · Nature Genetics
9. Top‐Down Proteomics: Why and When?
   Philipp T. Kaulich, A. Tholey · 2025 · Proteomics
10. Tandem Mass Tag-Based Serum Proteome Profiling for Biomarker Discovery in Young Duchenne Muscular Dystrophy Boys
    T. Alayi, Shefa M. Tawalbeh, M. Ogundele, H. Smith, Alison M. Samsel, Marissa L. Barbieri, Y. Hathout · 2020 · ACS Omega
11. Pervasive Charge Solvation Permeates Native-like Protein Ions and Dramatically Influences Top-down Sequencing Data.
    Daniel A. Polasky, S. Dixit, Michael F. Keating, Varun V. Gadkari, P. Andrews, B. Ruotolo · 2020 · Journal of the American Chemical Society
12. Quantitative Top-down Proteomics Revealed Kinase Inhibitor-induced Proteoform-level Changes in Cancer Cells
    Trishika Chowdhury, Kellye A. Cupp-Sutton, Yanting Guo, Kevin Gao, Zhi-Tao Zhao, Anthony W. G. Burgett, Si Wu · 2024 · Journal of Proteome Research
13. The Role of Protein Corona in Advancing Plasma Proteomics
    A. Saei, Liang-Liang Sun, M. Mahmoudi · 2024 · Proteomics
14. Histone H3K18 & H3K23 acetylation directs establishment of MLL-mediated H3K4 methylation
    Geoffrey C. Fox, Karl F. Poncha, B. R. Smith, Lara N. van der Maas, Nathaniel N. Robbins, Bria Graham, Jill M. Dowen, B. Strahl, Nicolas L. Young, Kanishk Jain · 2024 · Journal of Biological Chemistry
15. Mass Spectrometry-Based Proteomic Technology and Its Application to Study Skeletal Muscle Cell Biology
    Paul Dowling, Dieter Swandulla, K. Ohlendieck · 2023 · Cells
16. The Role of Clinical Glyco(proteo)mics in Precision Medicine
    Y. V. D. van der Burgt, M. Wuhrer · 2023 · Molecular & Cellular Proteomics
17. Cell-blocks and other ancillary studies (including molecular genetic tests and proteomics)
    V. Shidham · 2021 · CytoJournal
18. Enhancing Open Modification Searches via a Combined Approach Facilitated by Ursgal
    S. Schulze, A. B. Igiraneza, M. Kösters, Johannes Leufken, Sebastian A. Leidel, B. Garcia, C. Fufezan, Mechthild Pohlschröder · 2021 · Journal of Proteome Research
19. Deconvolving Native and Intact Protein Mass Spectra with UniDec.
    Marius M. Kostelic, M. Marty · 2020 · Methods in molecular biology
20. Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry for Characterizing Proteoforms
    Trisha Tucholski, Ying Ge · 2020 · Mass spectrometry reviews (Print)
21. Comparative proteomics reveals unexpected quantitative phosphorylation differences linked to platelet activation state
    G. Schmidt, C. Reumiller, H. Ercan, U. Resch, E. Butt, Stefan Heber, Z. Liutkevičiūtė, J. Basílio, J. Schmid, A. Assinger et al. · 2019 · Scientific Reports
22. On-line protein digestion by immobilized enzyme microreactor capillary electrophoresis-mass spectrometry.
    Lorena Villegas, R. Pero-Gascon, Fernando Benavente, J. Barbosa, V. Sanz-Nebot · 2019 · Talanta: The International Journal of Pure and Applied Analytical Chemistry
23. The Structural and Functional Diversity of Intrinsically Disordered Regions in Transmembrane Proteins
    Rajeswari Appadurai, Vladimir Nikolaevich Uversky, Anand Kumar Srivastava · 2019 · The Journal of Membrane Biology
24. The microtubule skeleton and the evolution of neuronal complexity in vertebrates
    N. Trushina, A. Mulkidjanian, R. Brandt · 2019 · Biological chemistry
25. Temperature-sensitive Sarcomeric Protein Post-translational Modifications Revealed by Top-down Proteomics
    Wenxuan Cai, Zachary Hite, Beini Lyu, Zhijie Wu, Zi-Qing Lin, Z. Gregorich, A. Messer, S. McIlwain, Steven B Marston, T. Kohmoto et al. · 2018 · Journal of Molecular and Cellular Cardiology
26. Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms
    Schaffer, Leah V., Tucholski, Trisha, Shortreed, Michael R., Ge, Ying, Smith, Lloyd M. · 2019 · Analytical Chemistry
27. Aging and diet alter the protein ubiquitylation landscape in the mouse brain
    Antonio Marino, Domenico Di Fraia, Diana Panfilova, Amit Kumar Sahu, Alberto Minetti, Omid Omrani, Emilio Cirri, Alessandro Ori‬‬ · 2025 · Nature Communications
28. Establishing a Top-Down Proteomics Platform on a Time-of-Flight Instrument with Electron-Activated Dissociation
    Richard M. Searfoss, Emily Zahn, Zong-Tao Lin, Benjamin A. Garcia · 2025 · Journal of Proteome Research
29. Proteomics: An Essential Tool to Study Plant-Specialized Metabolism
    M. J. Martínez-Esteso, Jaime Morante-Carriel, Antonio Samper-Herrero, A. Martínez-Márquez, S. Sellés-Marchart, Hugo Nájera, R. Bru-Martínez · 2024 · Biomolecules
30. On the Roles of Protein Intrinsic Disorder in the Origin of Life and Evolution
    V. Uversky · 2024 · Life
31. From Nanozymes to Multi‐Purpose Nanomaterials: The Potential of Metal–Organic Frameworks for Proteomics Applications
    Siene Swinnen, Francisco de Azambuja, T. Parac-Vogt · 2024 · Advanced Healthcare Materials
32. Present and Future Perspectives on Mass Spectrometry for Clinical Microbiology.
    Megan S. Gant, J. Chamot-Rooke · 2024 · Microbes and infection
33. The proteomics analysis of extracellular vesicles revealed the possible function of heat shock protein 60 in Helicobacter pylori infection
    Yu-Jie Li, Hui Cao, Dewen Qiu, Nan Wang, Yan Wang, Ting-Ting Wen, Jian-Jun Wang, Hong Zhu · 2023 · Cancer Cell International
34. Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Top-Down Proteomics of Mouse Brain Integral Membrane Proteins
    Qian-Jie Wang, Tian Xu, Fei Fang, Qian-Yi Wang, P. Lundquist, Liang-Liang Sun · 2023 · Analytical Chemistry
35. Oxiforms: Unique cysteine residue‐ and chemotype‐specified chemical combinations can produce functionally‐distinct proteoforms
    J. Cobley · 2023 · Bioessays
36. Spatial Proteomics for the Molecular Characterization of Breast Cancer
    Klára Brožová, Brigitte Hantusch, Lukas Kenner, Klaus Kratochwill · 2023 · Proteomes
37. Integrated top-down and bottom-up proteomics mass spectrometry for the characterization of endogenous ribosomal protein heterogeneity
    Ying Zhang, Qing Cai, Yuan Luo, Yu Zhang, Huilin Li · 2022 · Journal of Pharmaceutical Analysis
38. Immunoaffinity Capillary Electrophoresis in the Era of Proteoforms, Liquid Biopsy and Preventive Medicine: A Potential Impact in the Diagnosis and Monitoring of Disease Progression
    N. Guzman, Daniel E. Guzman · 2021 · Biomolecules
39. Putting Proteomics Into Immunotherapy for Glioblastoma
    Liang Chen, Di Qin, Xinyu Guo, Qi-Xue Wang, Jie Li · 2021 · Frontiers in Immunology
40. Quantitative mass spectrometry-based analysis of proteins related to cattle and their products - focus on cows' milk beta-casein proteoforms.
    J. Broadbent, M. Condina, M. Colgrave · 2020 · Methods
41. Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity
    S. Verhelst, Laura De Clerck, S. Willems, B. Van Puyvelde, S. Daled, D. Deforce, M. Dhaenens · 2020 · MethodsX
42. EnvCNN: A Convolutional Neural Network Model for Evaluating Isotopic Envelopes in Top-Down Mass-Spectral Deconvolution
    Abdul Rehman Basharat, Xia Ning, Xiaowen Liu · 2020 · Analytical Chemistry
43. Elucidating Proteoform Dynamics Underlying the Senescence Associated Secretory Phenotype
    Peter Francis Doubleday, Luca Fornelli, Neil L. Kelleher · 2020 · Journal of Proteome Research
44. Proteomics and Leishmaniasis: Potential Clinical Applications
    J. Capelli-Peixoto, S. Mule, Fabia Tomie Tano, Giuseppe Palmisano, B. Stolf · 2019 · PROTEOMICS - Clinical Applications
45. Decoding communication patterns of the innate immune system by quantitative proteomics
    A. Sukumaran, Jeremia M. Coish, J. Yeung, B. Muselius, M. Gadjeva, Adam J. MacNeil, Jennifer Geddes‐McAlister · 2019 · Journal of Leukocyte Biology
46. Detecting molecular forms of antithrombin by LC-MRM-MS: defining the measurands
    L. Ruhaak, F. Romijn, N. Smit, A. van der Laarse, M. Pieterse, M. D. de Maat, F. Haas, C. Kluft, J. Amiral, P. Meijer et al. · 2018 · Clinical Chemistry and Laboratory Medicine
47. pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization.
    Hao Yang, Hao Chi, Wen-Jing Zhou, Wen-feng Zeng, Chao Liu, Rui-Min Wang, Zhao-Wei Wang, X. Niu, Zhen-Lin Chen, Si-Min He · 2018 · Journal of Proteome Research
48. Application of pharmacometrics and quantitative systems pharmacology to cancer therapy: The example of luminal a breast cancer.
    Brett Fleisher, Ashley N. Brown, S. Ait-Oudhia · 2017 · Pharmacological Research
49. Proteogenomics in Aid of Host–Pathogen Interaction Studies: A Bacterial Perspective
    Fels, Ursula, Gevaert, Kris, Van Damme, Petra · 2017 · Proteomes
50. Ten “Cheat Codes” for Measuring Oxidative Stress in Humans
    Cobley, James N., Margaritelis, Nikos V., Chatzinikolaou, Panagiotis N., Nikolaidis, Michalis G., Davison, Gareth W. · 2024 · Antioxidants
51. Advancing nanopore technology toward protein identification and sequencing.
    Verena Rukes, Chan Cao · 2025 · TIBS -Trends in Biochemical Sciences. Regular ed
52. Cyclic Ion Mobility-Mass Spectrometry and Tandem Collision Induced Unfolding for Quantification of Elusive Protein Biomarkers
    Devin M. Makey, Varun V. Gadkari, Robert T. Kennedy, Brandon T. Ruotolo · 2024 · Analytical Chemistry
53. Bromodomain-containing Protein 4 regulates innate inflammation via modulation of alternative splicing
    Morgan W. Mann, Yao Fu, Robert L. Gearhart, Xiaofang Xu, David S. Roberts, Yi Li, Jia Zhou, Ying Ge, Allan R. Brasier · 2023 · Frontiers in Immunology
54. Long-read proteogenomics to connect disease-associated sQTLs to the protein isoform effectors of disease
    Arby Abood, L. Mesner, Erin D. Jeffery, Mayank Murali, Micah D. Lehe, Jamie Saquing, C. Farber, Gloria M. Sheynkman · 2023 · bioRxiv
55. Elucidating the functional roles of prokaryotic proteins using big data and artificial intelligence
    Zachary Ardern, S. Chakraborty, Florian Lenk, A. Kaster · 2023 · FEMS Microbiology Reviews
56. Revving an Engine of Human Metabolism: Activity Enhancement of Triosephosphate Isomerase via Hemi-Phosphorylation
    Luis F. Schachner, B. D. Soye, S. Ro, Grace E Kenney, Ashley N. Ives, Taojunfeng Su, Y. Goo, Michael C. Jewett, A. Rosenzweig, N. Kelleher · 2022 · ACS Chemical Biology
57. Proteomics Challenges for the Assessment of Synuclein Proteoforms as Clinical Biomarkers in Parkinson’s Disease
    M. Pons, N. Loftus, J. Vialaret, S. Moreau, S. Lehmann, C. Hirtz · 2022 · Frontiers in Aging Neuroscience
58. Applications of CRISPR-Cas Technologies to Proteomics
    Georgii V. Dolgalev, Ekaterina Vladimirovna Poverennaya · 2021 · Genes
59. Microfluidic ion stripper for removal of trifluoroacetic acid from mobile phases used in HILIC-MS of intact proteins
    S. Wouters, S. Eeltink, R. Haselberg, G. Somsen, A. Gargano · 2021 · Analytical and Bioanalytical Chemistry
60. Intrinsic Disorder in Tetratricopeptide Repeat Proteins
    Nathan W Van Bibber, Cornelia Haerle, Roy Khalife, Bin Xue, Vladimir Nikolaevich Uversky · 2020 · International Journal of Molecular Sciences
61. Review of approaches and examples for monitoring biotransformation in protein and peptide therapeutics by MS.
    John F. Kellie, Molly Z Karlinsey · 2018 · Bioanalysis
62. Mass Spectrometric Studies of Apolipoprotein Proteoforms and Their Role in Lipid Metabolism and Type 2 Diabetes
    D. Nedelkov · 2017 · Proteomes
63. Role of lysine lactylation in neoplastic and inflammatory pulmonary diseases (Review)
    Shan-Shan Wang, Hongyan Zheng, Jian-Ping Zhao, Jun-Gang Xie · 2025 · International Journal of Molecular Medicine
64. Recent developments of imaged capillary isoelectric focusing technology for in-depth biopharmaceutical characterization
    Tao Bo, Feng Yang, Bowen Yan, D. Michels, Tie-Min Huang, Janusz Pawliszyn · 2025 · Trends in Analytical Chemistry (TrAC)
65. Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
    Nisha Hemandhar Kumar, Verena Kluever, Emanuel Barth, Sebastian Krautwurst, Mattia Furlan, Mattia Pelizzola, Manja Marz, Eugenio F. Fornasiero · 2024 · Nucleic Acids Research
66. Current Methods for Identifying Plasma Membrane Proteins as Cancer Biomarkers
    Edwin D. de Jong, Armağan Koçer · 2023 · Membranes
67. A Nonionic, Cleavable Surfactant for Top-down Proteomics
    Kyle A. Brown, Morgan K Gugger, Zhen Yu, David Moreno, Song Jin, Ying Ge · 2023 · Analytical Chemistry
68. Seeing the complete picture: proteins in top-down mass spectrometry
    Tanja Habeck, Frederik Lermyte · 2022 · Essays in Biochemistry
69. Individual Genetic Heterogeneity
    M. Vihinen · 2022 · Genes
70. Mapping the O-GlcNAc Modified Proteome: Applications for Health and Disease
    Rajan A. Burt, Ibtihal M. Alghusen, Sophiya John Ephrame, M. T. Villar, A. Artigues, Chad Slawson · 2022 · Frontiers in Molecular Biosciences
71. Data-independent acquisition protease-multiplexing enables increased proteome sequence coverage across multiple fragmentation modes
    Alicia L. Richards, Kuei-Ho Chen, D. Wilburn, Erica Stevenson, B. Polacco, B. Searle, D. Swaney · 2021 · bioRxiv
72. Multifunctionality and intrinsic disorder of royal jelly proteome
    V. Uversky, Abdulgader Albar, R. H. Khan, E. Redwan · 2021 · Proteomics
73. Bacterial riboproteogenomics: the era of N-terminal proteoform existence revealed.
    D. Fijałkowska, Igor Fijalkowski, P. Willems, Petra Van Damme · 2020 · FEMS Microbiology Reviews
74. Towards identification of novel putative biomarkers for infective endocarditis by serum proteomic analysis.
    M. G. Snipsøyr, H. Wiggers, M. Ludvigsen, A. Stensballe, H. Vorum, S. Poulsen, L. Rasmussen, E. Petersen, B. Honoré · 2020 · International Journal of Infectious Diseases
75. Ultrahigh Resolution Ion Isolation by Stored Waveform Inverse Fourier Transform 21 T Fourier Transform Ion Cyclotron Resonance Mass Spectrometry.
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76. Investigations of the Copper Peptide Hepcidin-25 by LC-MS/MS and NMR +
    I. Abbas, M. Vranić, H. Hoffmann, Ahmed H. El-Khatib, M. Montes-Bayón, H. Möller, M. Weller · 2018 · International Journal of Molecular Sciences
77. Comprehensive Characterization of Swine Cardiac Troponin T Proteoforms by Top-down Mass Spectrometry
    Zi-Qing Lin, Fang Guo, Z. Gregorich, Rui-Xiang Sun, Han Zhang, Yang Hu, D. Shanmuganayagam, Ying Ge · 2018 · Journal of the American Society for Mass Spectrometry
78. Spatial top-down proteomics for the functional characterization of human kidney
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79. High‐Throughput Proteomics Enabled by a Photocleavable Surfactant
    Brown, Kyle A., Tucholski, Trisha, Eken, Christian, Knott, Samantha, Zhu, Yanlong, Jin, Song, Ge, Ying · 2020 · Angewandte Chemie
80. Proteomic studies of micronutrient deficiency and toxicity
    Ali, Aarif, Bhat, Basharat Ahmad, Rather, Gulzar Ahmed, Malla, Bashir Ahmad, Ganie, Showkat Ahmad · 2020 · Plant Micronutrients
81. Proteoformics: Current status and future perspectives.
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82. 50 shades of oxidative stress: A state-specific cysteine redox pattern hypothesis
    J. Cobley · 2023 · Redox Biology
83. Top-down Proteomics of Myosin Light Chain Isoforms Define Chamber-specific Expression in the Human Heart
    Elizabeth F. Bayne, Kalina J. Rossler, Z. Gregorich, Timothy J. Aballo, David S. Roberts, Emily A. Chapman, Wei Guo, S. Palecek, J. Ralphe, T. Kamp et al. · 2023 · Journal of Molecular and Cellular Cardiology
84. MS-TAFI: A Tool for the Analysis of Fragment Ions Generated from Intact Proteins
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85. An optimized Western blot assay provides a comprehensive assessment of the physiological endoproteolytic processing of the prion protein
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86. Investigating pathological epigenetic aberrations by epi-proteomics
    Giulia Robusti, Alessandro Vai, T. Bonaldi, R. Noberini · 2022 · Clinical Epigenetics
87. Biophysical insights into glucose-dependent transcriptional regulation by PDX1
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88. Thermal neutron cross sections of amino acids from average contributions of functional groups
    G. Romanelli, Dalila Onorati, P. Ulpiani, S. Cancelli, E. Perelli-Cippo, J. I. Marquez Damian, S. Capelli, G. Croci, A. Muraro, M. Tardocchi et al. · 2021 · Journal of Physics: Condensed Matter
89. Mass spectrometry-based proteomics analyses of post-translational modifications and proteoforms in human pituitary adenomas.
    Jiajia Li, X. Zhan · 2020 · Biochimica et Biophysica Acta - Proteins and Proteomics
90. Optical Fiber-Enabled Photoactivation of Peptides and Proteins
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91. Top-down and bottom-up proteomics of circulating S100A8/S100A9 in plasma of septic shock patients.
    C. Dubois, D. Payen, S. Simon, C. Junot, F. Fenaille, N. Morel, F. Becher · 2020 · Journal of Proteome Research
92. Characterization of human sperm protamine proteoforms through a combination of top-down and bottom-up mass spectrometry approaches.
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93. Multidimensional Top-Down Proteomics of Brain Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol
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94. Quantification of surfactant protein D (SPD) in human serum by liquid chromatography-mass spectrometry (LC-MS).
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95. Investigation and development of maize fused network analysis with multi-omics.
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96. Origins and clinical relevance of proteoforms in pediatric malignancies
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97. Proteomic profiling identifies outcome-predictive markers in patients with peripheral T-cell lymphoma, not otherwise specified.
    M. Ludvigsen, Martin Bjerregård Pedersen, Kristina Lystlund Lauridsen, Tim Svenstrup Poulsen, S. Hamilton-Dutoit, Søren Besenbacher, K. Bendix, M. Møller, P. Nørgaard, F. d'Amore et al. · 2018 · Blood Advances
98. Application of Tandem Two-Dimensional Mass Spectrometry for Top-Down Deep Sequencing of Calmodulin
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99. Cutting in the middleman: hidden substrates at the interface between proteases and plant development.
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100. Intact Proteoform Analysis by Capillary Electrophoresis–Mass Spectrometry. Are We There Yet?
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