Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
Kulak, Nils A, Pichler, Garwin, Paron, Igor, Nagaraj, Nagarjuna, Mann, Matthias·2014·Nature Methods
Cited by (1,002)
Items 101–200 of 1,002
- Dietary restriction of cysteine and methionine sensitizes gliomas to ferroptosis and induces alterations in energetic metabolismPavan S. Upadhyayula, Dominique M. O. Higgins, Angeliki Mela, Matei A. Banu, Athanassios Dovas, Fereshteh Zandkarimi, Purvi R. Patel, Aayushi Mahajan, Nelson Humala, Trang Thi Thu Nguyen et al. · 2023 · Nature Communications
- Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathwaysMichael Jakob Pichler, Chihaya Yamada, Bashar Shuoker, Maria Camila Alvarez Silva, Aina Gotoh, Maria Louise Leth, Erwin M. Schoof, Toshihiko Katoh, Mikiyasu Sakanaka, Takane Katayama et al. · 2020 · Nature Communications
- Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulationBogi Karbech Hansen, Rajat Gupta, Linda Baldus, David B. Lyon, Takeo Narita, Michael Lammers, Chunaram Choudhary, Brian Tate Weinert · 2019 · Nature Communications
- R2‐P2 rapid‐robotic phosphoproteomics enables multidimensional cell signaling studiesMario Leutert, Ricard A. Rodríguez‐Mias, Noelle K. Fukuda, Judit Villén · 2019 · Molecular Systems Biology
- Structure of human Fe–S assembly subcomplex reveals unexpected cysteine desulfurase architecture and acyl-ACP–ISD11 interactionsSeth A. Cory, Jonathan G. Van Vranken, Edward J. Brignole, Shachin Patra, Dennis R. Winge, Catherine Luschinsky Drennan, Jared P. Rutter, D.P. Barondeau · 2017 · Proceedings of the National Academy of Sciences
- Basement membrane stiffness determines metastases formationRaphael Reuten, Sina Zendehroud, Monica M Nicolau, Lutz Fleischhauer, Anu Laitala, Stefanie Kiderlen, Denise Nikodemus, Lena Wullkopf, Sebastian Rune Nielsen, Sarah McNeilly et al. · 2021 · Nature Materials
- The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics *Scarlet Beck, Annette Michalski, Oliver Raether, Markus Lubeck, Stephanie Kaspar, Niels Goedecke, Carsten Baessmann, Daniel Hornburg, Florian Meier, Igor Paron et al. · 2015 · Molecular & Cellular Proteomics
- Quality Control of Orphaned ProteinsJuszkiewicz, Szymon, Hegde, Ramanujan S. · 2018 · Molecular Cell
- Proteome-Wide Evaluation of Two Common Protein Quantification MethodsJeremy D. O’Connell, João A. Paulo, Jonathon J. O’Brien, Steven P. Gygi · 2018 · Journal of Proteome Research
- Kinase-impaired BTK mutations are susceptible to clinical-stage BTK and IKZF1/3 degrader NX-2127Montoya, Skye, Bourcier, Jessie, Noviski, Mark, Lu, Hao, Thompson, Meghan C., Chirino, Alexandra, Jahn, Jacob, Sondhi, Anya K., Gajewski, Stefan, Tan, Ying Siow (May) et al. · 2024 · Science
- Loss-less Nano-fractionator for High Sensitivity, High Coverage ProteomicsNils A. Kulak, Philipp Emanuel Geyer, Matthias Mann · 2017 · Molecular & Cellular Proteomics
- Ribosome collisions trigger cis-acting feedback inhibition of translation initiationSzymon Juszkiewicz, Greg Slodkowicz, Zhewang Lin, Paula Freire-Pritchett, Sew‐Yeu Peak‐Chew, Ramanujan S. Hegde · 2020 · eLife
- Cell-Type-Resolved Quantitative Proteomics of Murine LiverAzimifar, S. Babak, Nagaraj, Nagarjuna, Cox, Juergen, Mann, Matthias · 2014 · Cell Metabolism
- Rapid and Deep Proteomes by Faster Sequencing on a Benchtop Quadrupole Ultra-High-Field Orbitrap Mass SpectrometerChristian D. Kelstrup, Rosa Jersie-Christensen, Tanveer Singh Batth, Tabiwang N. Arrey, Andreas Kuehn, Markus Kellmann, Jesper Velgaard Olsen · 2014 · Journal of Proteome Research
- Distinct proteostasis circuits cooperate in nuclear and cytoplasmic protein quality controlRahul S. Samant, Christine M. Livingston, Emily Mitchell Sontag, Judith Frydman · 2018 · Nature
- Intra-condensate demixing of TDP-43 inside stress granules generates pathological aggregatesXiao Yan, David Kuster, Priyesh Mohanty, Jik Nijssen, Karina Pombo García, Jorge García Morato, Azamat Rizuan, Titus M. Franzmann, Aleksandra V. Sergeeva, Anh M. Ly et al. · 2025 · Cell
- The Proteome of Native Adult Müller Glial Cells From Murine RetinaAntje Grosche, Alexandra Hauser, Marlen F. Lepper, Rebecca Mayo, Christine von Toerne, Juliane Merl‐Pham, Stefanie M. Hauck · 2015 · Molecular & Cellular Proteomics
- Quantitative nature of overexpression experimentsHisao Moriya · 2015 · Molecular Biology of the Cell
- New Perspectives, Opportunities, and Challenges in Exploring the Human Protein KinomeLeah Wilson, Adam J. Linley, Dean E. Hammond, Fiona E. Hood, Judy M. Coulson, David J. MacEwan, Sarah J. Ross, Joseph R. Slupsky, Paul D. Smith, Patrick A. Eyers et al. · 2017 · Cancer Research
- Dnmt1 has de novo activity targeted to transposable elementsChuck Haggerty, Helene Kretzmer, Christina Riemenschneider, Abhishek Sampath Kumar, Alexandra L. Mattei, Nina Bailly, Judith Gottfreund, Pay Gießelmann, Raha Weigert, Björn Brändl et al. · 2021 · Nature Structural & Molecular Biology
- Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel BatokineAtul S. Deshmukh, Lone Peijs, Jacqueline Leah Beaudry, Naja Zenius Jespersen, Carsten Haagen Nielsen, Tao Ma, Andreas‐David Brunner, Therese Juhlin Larsen, Rafael Bayarri‐Olmos, Bhargav S. Prabhakar et al. · 2019 · Cell Metabolism
- Human iPSC-Derived Neural Progenitors Are an Effective Drug Discovery Model for Neurological mtDNA DisordersCarmen Lorenz, Pierre Lesimple, Raul Bukowiecki, Annika Zink, Gizem Inak, Barbara Mlody, Manvendra Singh, Marcus Semtner, Nancy Mah, Karine Auré et al. · 2017 · Cell stem cell
- Characterizing Protein–Protein Interactions Using Mass Spectrometry: Challenges and OpportunitiesArne H. Smits, Michiel Vermeulen · 2016 · Trends in biotechnology
- Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnoverSeok Heo, Graham H. Diering, Chan Hyun Na, Raja Sekhar Nirujogi, Julia L. Bachman, Akhilesh Pandey, Richard L. Huganir · 2018 · Proceedings of the National Academy of Sciences
- Endosomal Retrieval of Cargo: Retromer Is Not AloneKerrie E. McNally, Peter J. Cullen · 2018 · Trends in Cell Biology
- Defining the Adult Neural Stem Cell Niche Proteome Identifies Key Regulators of Adult NeurogenesisKjell, Jacob, Fischer-Sternjak, Judith, Thompson, Amelia J., Friess, Christian, Sticco, Matthew J., Salinas, Favio, Cox, Jürgen, Martinelli, David C., Ninkovic, Jovica, Franze, Kristian et al. · 2020 · Cell Stem Cell
- Caveolae: Formation, dynamics, and functionRobert G. Parton, Kerrie‐Ann McMahon, Yeping Wu · 2020 · Current Opinion in Cell Biology
- Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in ArabidopsisMarkus Hartl, Magdalena Füßl, Paul J. Boersema, Jan Oliver Jost, Katharina Kramer, Ahmet Bakirbas, Julia Sindlinger, Magdalena Plöchinger, Dario Leister, R. Glen Uhrig et al. · 2017 · Molecular Systems Biology
- Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories towards type 2 diabetesLeonore Wigger, Marko Barovic, Andreas‐David Brunner, Flavia Marzetta, Eyke Schöniger, Florence Mehl, Nicole Kipke, Daniela Friedland, Frédéric Burdet, Camille Kessler et al. · 2021 · Nature Metabolism
- Proteome profiling of cerebrospinal fluid reveals biomarker candidates for Parkinson’s diseaseÖzge Karayel, Sebastian Virreira Winter, Shalini Padmanabhan, Yuliya I. Kuras, Duc Tung Vu, Idil Tuncali, Kalpana Merchant, Anne-Marie A. Wills, Clemens R. Scherzer, Matthias Mann · 2022 · Cell Reports Medicine
- Proteomic insights into extracellular vesicle biology – defining exosomes and shed microvesiclesDavid W. Greening, Rong Xu, Shashi K. Gopal, Alin Rai, Richard J. Simpson · 2016 · Expert Review of Proteomics
- Absolute Proteome and Phosphoproteome Dynamics during the Cell Cycle of Schizosaccharomyces pombe (Fission Yeast)Alejandro Carpy, Karsten Krug, Sabine Graf, André Koch, Sasa Popic, Silke Hauf, Boris Maček · 2014 · Molecular & Cellular Proteomics
- AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9AAlexandra K. Davies, Daniel N. Itzhak, James R. Edgar, Tara L. Archuleta, Jennifer Hirst, Lauren Parker Jackson, Margaret S. Robinson, Georg H. H. Borner · 2018 · Nature Communications
- Systematic Detection of Amino Acid Substitutions in Proteomes Reveals Mechanistic Basis of Ribosome Errors and Selection for Translation FidelityErnest Mordret, Orna Dahan, Omer Asraf, Roni Rak, Avia Yehonadav, Georgina D. Barnabas, Jürgen Cox, Tamar Geiger, Ariel B. Lindner, Yitzhak Pilpel · 2019 · Molecular Cell
- The Incomplete Glutathione Puzzle: Just Guessing at Numbers and Figures?Marcel Deponte · 2017 · Antioxidants and Redox Signaling
- Splicing factor YBX1 mediates persistence of JAK2-mutated neoplasmsAshok Kumar Jayavelu, Tina M. Schnoeder, Florian Perner, Carolin Herzog, Arno Meiler, Gurumoorthy Krishnamoorthy, Nicolas Huber, Juliane Mohr, Bärbel Edelmann-Stephan, Rebecca J. Austin et al. · 2020 · Nature
- High-throughput proteomics and AI for cancer biomarker discoveryQi Xiao, Fangfei Zhang, Luang Xu, Liang Yue, Oi Lian Kon, Yi Zhu, Tiannan Guo · 2021 · Advanced Drug Delivery Reviews
- The proteogenomic subtypes of acute myeloid leukemiaAshok Kumar Jayavelu, Sebastian Wolf, Florian Buettner, Gabriela Alexe, Björn Häupl, Federico Comoglio, Constanze Schneider, Carmen Doebele, Dominik Christian Fuhrmann, Sebastian Wagner et al. · 2022 · Cancer Cell
- Update on Selenoprotein BiosynthesisAnne‐Laure Bulteau, Laurent Chavatte · 2015 · Antioxidants and Redox Signaling
- Urinary proteome profiling for stratifying patients with familial Parkinson’s diseaseSebastian Virreira Winter, Özge Karayel, Maximilian T. Strauss, Shalini Padmanabhan, Matthew Surface, Kalpana Merchant, Roy N. Alcalay, Matthias Mann · 2021 · EMBO Molecular Medicine
- Ubiquitination of exposed glycoproteins by SCF FBXO27 directs damaged lysosomes for autophagyYukiko Yoshida, Sayaka Yasuda, Toshiharu Fujita, Maho Hamasaki, Arisa Murakami, Junko Kawawaki, Kazuhiro Iwaï, Yasushi Saeki, Tamotsu Yoshimori, Noriyuki Matsuda et al. · 2017 · Proceedings of the National Academy of Sciences
- MCM complexes are barriers that restrict cohesin-mediated loop extrusionBart J. H. Dequeker, Matthias J Scherr, Hugo B. Brandão, Johanna Gassler, Sean T. Powell, Imre Gáspár, Ilya M. Flyamer, Aleksandar Lalic, Wen Tang, Roman R. Stocsits et al. · 2022 · Nature
- Regulation of ribosomal RNA gene copy number, transcription and nucleolus organization in eukaryotesYutaro Hori, Christoph Engel, Takehiko Kobayashi · 2023 · Nature Reviews Molecular Cell Biology
- Time-resolved in vivo ubiquitinome profiling by DIA-MS reveals USP7 targets on a proteome-wide scaleMartin Steger, Vadim Demichev, Mattias Backman, Uli Ohmayer, Phillip Ihmor, Stefan Müller, Markus Ralser, Henrik Daub · 2021 · Nature Communications
- Multi-omic Profiling Reveals Dynamics of the Phased Progression of PluripotencyYang, Pengyi, Humphrey, Sean J., Cinghu, Senthilkumar, Pathania, Rajneesh, Oldfield, Andrew J., Kumar, Dhirendra, Perera, Dinuka, Yang, Jean Y.H., James, David E., Mann, Matthias et al. · 2019 · Cell Systems
- TET3 Is Recruited by REST for Context-Specific Hydroxymethylation and Induction of Gene ExpressionPerera, Arshan, Eisen, David, Wagner, Mirko, Laube, Silvia K., Künzel, Andrea F., Koch, Susanne, Steinbacher, Jessica, Schulze, Elisabeth, Splith, Victoria, Mittermeier, Nana et al. · 2015 · Cell Reports
- Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndromeGizem Inak, Agnieszka Rybak‐Wolf, Paweł Lisowski, Tancredi Massimo Pentimalli, René Jüttner, Petar Glažar, Karan Uppal, Emanuela Bottani, Dario Brunetti, Christopher Secker et al. · 2021 · Nature Communications
- Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal NeuronsHarm Post, Renske Penning, Martin A. Fitzpatrick, Luc Garrigues, Wei Wu, Harold D. MacGillavry, Casper C. Hoogenraad, Albert J. R. Heck, Maarten A. F. Altelaar · 2016 · Journal of Proteome Research
- Filter Aided Sample Preparation – A tutorialJacek R. Wiśniewski · 2019 · Analytica Chimica Acta
- Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assemblyShan Zhang, Boris Reljić, Chao Liang, Baptiste Kerouanton, Joel Celio Francisco, Jih Hou Peh, Camille Mary, Narendra Suhas Jagannathan, Volodimir Olexiouk, Claire Tang et al. · 2020 · Nature Communications
- Translational repression of pre-formed cytokine-encoding mRNA prevents chronic activation of memory T cellsFiamma Salerno, Sander Engels, Maartje van den Biggelaar, Floris P. J. van Alphen, Aurélie Guislain, Wanqi Zhao, Deborah L. Hodge, Sarah E. Bell, Jan Paul Medema, Marieke v. Lindern et al. · 2018 · Nature Immunology
- Regulation of Amino Acid Transport in Saccharomyces cerevisiaeFrans Bianchi, Joury S. van ’t Klooster, Stephanie J. Ruiz, Bert Poolman · 2019 · Microbiology and Molecular Biology Reviews
- The Hsp70-Hsp90 co-chaperone Hop/Stip1 shifts the proteostatic balance from folding towards degradationKaushik Bhattacharya, Lorenz Weidenauer, Tania Morán Luengo, Ellis C. Pieters, Pablo C. Echeverría, Lilia Bernasconi, Diana Wider, Yashar Sadian, Margreet B. Koopman, Matthieu Villemin et al. · 2020 · Nature Communications
- Bottom-Up Proteomics: Advancements in Sample PreparationVan‐An Duong, Hookeun Lee · 2023 · International Journal of Molecular Sciences
- Antisense‐mediated exon skipping: a therapeutic strategy for titin‐based dilated cardiomyopathyMichael Gramlich, Luna Simona Pane, Qifeng Zhou, Zhifen Chen, Marta Murgia, Sonja Schötterl, Alexander Goedel, Katja Metzger, Thomas Brade, Elvira Immacolata Parrotta et al. · 2015 · EMBO Molecular Medicine
- Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyesMehdi Mirzaei, Veer Bala Gupta, Joel M. Chick, Todd M. Greco, Yunqi Wu, Nitin Chitranshi, Roshana Vander Wall, Eugene Hone, Liting Deng, Yogita Dheer et al. · 2017 · Scientific Reports
- Simple and Integrated Spintip-Based Technology Applied for Deep Proteome ProfilingWendong Chen, Shuai Wang, Subash Adhikari, Zuhui Deng, Lingjue Wang, Lan Chen, Mi Ke, Pengyuan Yang, Ruijun Tian · 2016 · Analytical Chemistry
- Deep learning the collisional cross sections of the peptide universe from a million experimental valuesFlorian Meier, Niklas Köhler, Andreas‐David Brunner, Jean-Marc H. Wanka, Eugenia Voytik, Maximilian T. Strauss, Fabian Joachim Theis, Matthias Mann · 2021 · Nature Communications
- Serial interactome capture of the human cell nucleusThomas Conrad, Anne-Susann Albrecht, Veronica Rodrigues de Melo Costa, Sascha Sauer, David Meierhofer, Ulf Andersson Ørom · 2016 · Nature Communications
- Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoVAlexey Stukalov, Virginie Girault, Vincent Grass, Ozge Karayel, Valter Bergant, Christian Urban, Darya A. Haas, Yiqi Huang, Lila Oubraham, Anqi Wang et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of down Syndrome.Pinto, Bruno, Morelli, Giovanni, Rastogi, Mohit, Savardi, Annalisa, Fumagalli, Amos, Petretto, Andrea, Bartolucci, Martina, Varea, Emilio, Catelani, Tiziano, Contestabile, Andrea et al. · 2020 · Neuron
- Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operationRoxana E. Georgescu, Grant D. Schauer, Nina Y. Yao, Lance D. Langston, Olga Yurieva, Dan Zhang, Jeff Finkelstein, Mike E. O’Donnell · 2015 · eLife
- Mechanistic basis for a molecular triage reactionSichen Shao, Monica C. Rodrigo-Brenni, Maryann H. Kivlen, Ramanujan S. Hegde · 2017 · Science
- The gut microbe Bacteroides fragilis ameliorates renal fibrosis in miceWei Zhou, Wenhui Wu, Zi-lin Si, Huiling Liu, Hanyu Wang, Hong Jiang, Ya‐fang Liu, Raphael Nammahime Alolga, Cheng Chen, Shijia Liu et al. · 2022 · Nature Communications
- Gel‐aided sample preparation (GASP)—A simplified method for gel‐assisted proteomic sample generation from protein extracts and intact cellsRomán Fischer, Benedikt Mathias Kessler · 2014 · PROTEOMICS
- The widespread role of non-enzymatic reactions in cellular metabolismMarkus Andreas Keller, Gabriel Piedrafita, Markus Ralser · 2015 · Current Opinion in Biotechnology
- A Perspective on Extracellular Vesicles ProteomicsLívia Rosa-Fernandes, Victória Bombarda-Rocha, Victor Corasolla Carregari, Andrea Urbani, Giuseppe Palmisano · 2017 · Frontiers in Chemistry
- The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing ProteinsMoritz Mühlhofer, Evi Berchtold, Christopher Stratil, Gergely Csaba, Elena Kunold, Nina C. Bach, Stephan A. Sieber, Martin Haslbeck, Ralf Zimmer, Johannes Büchner · 2019 · Cell Reports
- Role of the AP-5 adaptor protein complex in late endosome-to-Golgi retrievalJennifer Hirst, Daniel N. Itzhak, Robin Antrobus, Georg H. H. Borner, Margaret S. Robinson · 2018 · PLoS Biology
- Argonaute-miRNA Complexes Silence Target mRNAs in the Nucleus of Mammalian Stem CellsAishe A. Sarshad, Aster H. Juan, Ana Iris Correa Muler, Dimitrios G. Anastasakis, Xiantao Wang, Pavol Genzor, Xuesong Feng, Pei-Fang Tsai, Hong‐Wei Sun, Astrid D. Desiree Haase et al. · 2018 · Molecular Cell
- Solvent Precipitation SP3 (SP4) Enhances Recovery for Proteomics Sample Preparation without Magnetic BeadsHarvey E. Johnston, Kranthikumar Yadav, Joanna M Kirkpatrick, George S. Biggs, David Oxley, Holger Kramer, Rahul S. Samant · 2022 · Analytical Chemistry
- Transformative Opportunities for Single-Cell ProteomicsHarrison Specht, Nikolai Slavov · 2018 · Journal of Proteome Research
- A strategy for dissecting the architectures of native macromolecular assembliesYi Shi, Riccardo Pellarin, Peter C. Fridy, Javier Fernández-Martı́nez, Mary K Thompson, Yinyin Li, Qing Jun Wang, Andrej Šali, Michael P. Rout, Brian T. Chait · 2015 · Nature Methods
- Tunneling nanotube-mediated intercellular vesicle and protein transfer in the stroma-provided imatinib resistance in chronic myeloid leukemia cellsMarta D. Kolba, Wioleta Dudka, Monika Zaręba-Kozioł, Agata Kominek, Paolo Ronchi, Laura Turos-Korgul, Piotr Chrościcki, Jakub Włodarczyk, Yannick Schwab, Agata Klejman et al. · 2019 · Cell Death and Disease
- Regulatory functions of the Mediator kinases CDK8 and CDK19Charli B. Fant, Dylan J. Taatjes · 2018 · Transcription
- Biallelic Mutations in MRPS34 Lead to Instability of the Small Mitoribosomal Subunit and Leigh SyndromeNicole J. Lake, Bryn D. Webb, David A. Stroud, Tara R. Richman, Benedetta Ruzzenente, Alison G. Compton, Hayley S. Mountford, Juliette Pulman, Coralie Zangarelli, Marlène Rio et al. · 2017 · The American Journal of Human Genetics
- Metabolic Maturation during Muscle Stem Cell Differentiation Is Achieved by miR-1/133a-Mediated Inhibition of the Dlk1-Dio3 Mega Gene ClusterStas Wüst, Stefan Dröse, Juliana Heidler, Ilka Wittig, Ina Klockner, András Frankó, Erik Bonke, Stefan Günther, Ulrich Gärtner, Thomas Boettger et al. · 2018 · Cell Metabolism
- Assessing the impact of protein extraction methods for human gut metaproteomicsXu Zhang, Leyuan Li, Janice Mayne, Zhibin Ning, Alain P. Stintzi, Daniel Figeys · 2017 · Journal of Proteomics
- PPM1H phosphatase counteracts LRRK2 signaling by selectively dephosphorylating Rab proteinsKerryn Berndsen, Paweł Lis, Wondwossen M Yeshaw, Paulina S. Wawro, Raja Sekhar Nirujogi, Melanie Wightman, Thomas Macartney, Mark Dorward, Axel Knebel, Francesca Tonelli et al. · 2019 · eLife
- Surfactant-assisted one-pot sample preparation for label-free single-cell proteomicsChia‐Feng Tsai, Pengfei Zhang, David Scholten, Kendall Martin, Yi-Ting Wang, Rui Zhao, William Chrisler, Dhwani B. Patel, Maowei Dou, Yuzhi Jia et al. · 2021 · Communications Biology
- Strategies for designing proteolysis targeting chimaeras (PROTACs)Shipeng He, Guoqiang Dong, Junfei Cheng, Ying Wu, Chunquan Sheng · 2022 · Medicinal Research Reviews
- In Search of a Universal Method: A Comparative Survey of Bottom-Up Proteomics Sample Preparation MethodsGina Varnavides, Moritz Madern, Dorothea Anrather, Natascha Hartl, Wolfgang Reiter, Markus Hartl · 2022 · Journal of Proteome Research
- MaxQuant.Live Enables Global Targeting of More Than 25,000 PeptidesChristoph Wichmann, Florian Meier, Sebastian Virreira Winter, Andreas‐David Brunner, Jürgen Cox, Matthias Mann · 2019 · Molecular & Cellular Proteomics
- A comprehensive method for detecting ubiquitinated substrates using TR-TUBEYukiko Yoshida, Yasushi Saeki, Arisa Murakami, Junko Kawawaki, Hikaru Tsuchiya, Hidehito Yoshihara, Mayumi Shindo, Keiji Tanaka · 2015 · Proceedings of the National Academy of Sciences
- The Case for Proteomics and Phospho‐Proteomics in Personalized Cancer MedicineSophia Doll, Florian Gnad, Matthias Mann · 2019 · PROTEOMICS - CLINICAL APPLICATIONS
- DDX3 depletion represses translation of mRNAs with complex 5′ UTRsLorenzo Calviello, Srivats Venkataramanan, Karol Jerzy Rogowski, Emanuel Wyler, Kevin Wilkins, Malvika Tejura, Bao Thai, Jacek Król, Witold Filipowicz, Markus Landthaler et al. · 2021 · Nucleic Acids Research
- Small-molecule allosteric inhibitors of GPX4Hengrui Liu, F. Forouhar, Annie J. Lin, Qian Wang, Vasiliki Polychronidou, Rajesh Kumar Soni, Xin Xia, Brent R. Stockwell · 2022 · Cell chemical biology
- One-hour proteome analysis in yeastAlicia Richards, Alexander S. Hebert, Arne Ulbrich, Derek J. Bailey, Emma E. Coughlin, Michael S. Westphall, Joshua J. Coon · 2015 · Nature Protocols
- Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome SamplesSamuel S. H. Weng, Fatih Demir, Enes K. Ergin, Sabrina Dirnberger, Anuli Christiana Uzozie, Domenic Tuscher, Lorenz A. Nierves, Janice Tsui, Pitter F. Huesgen, Philipp F. Lange · 2019 · Molecular & Cellular Proteomics
- TANGO1 recruits ERGIC membranes to the endoplasmic reticulum for procollagen exportAntónio J. M. Santos, Ishier Raote, Margherita Scarpa, Nathalie Brouwers, Vivek Malhotra · 2015 · eLife
- Brain organoid formation on decellularized porcine brain ECM hydrogelsSimsa, Robin, Rothenbücher, Theresa, Gürbüz, Hakan, Ghosheh, Nidal, Emneus, Jenny, Jenndahl, Lachmi, Kaplan, David L., Bergh, Niklas, Serrano, Alberto Martinez, Fogelstrand, Per · 2021 · PLOS ONE
- Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteomeSabine Hartlieb, Lina Sieverling, Michal Nadler-Holly, Matthias Ziehm, Umut H. Toprak, Carl Herrmann, Naveed Ishaque, Konstantin Okonechnikov, Moritz Gartlgruber, Young-Gyu Park et al. · 2021 · Nature Communications
- Mechanisms for Regulating and Organizing Receptor Signaling by EndocytosisMark von Zastrow, Alexander D. Sorkin · 2021 · Annual Review of Biochemistry
- Phosphoproteomics Reveals the GSK3-PDX1 Axis as a Key Pathogenic Signaling Node in Diabetic IsletsFrancesca Sacco, Anett Seelig, Sean J. Humphrey, Natalie Krahmer, Francesco Volta, Alessio Reggio, Piero Marchetti, Jantje M. Gerdes, Matthias Mann · 2019 · Cell Metabolism
- Proteomic Analysis of Human Plasma during Intermittent FastingDylan Harney, Amy T. Hutchison, Luke Hatchwell, Sean J. Humphrey, David Ernest James, SAMANTHA L. HOCKING, Leonie Kaye Heilbronn, Mark Larance · 2019 · Journal of Proteome Research
- Fully Automated Sample Processing and Analysis Workflow for Low-Input Proteome ProfilingYiran Liang, Hayden Acor, Michaela A. McCown, Andikan J. Nwosu, Hannah Boekweg, Nathaniel B. Axtell, Thy Truong, Yongzheng Cong, Samuel Payne, Ryan Kelly · 2020 · Analytical Chemistry
- Absolute proteome quantification of highly purified populations of circulating reticulocytes and mature erythrocytesEmilie‐Fleur Gautier, Marjorie Leduc, Sylvie Cochet, Karine Bailly, C. Lacombe, Narla Mohandas, François Guillonneau, Wassim El Nemer, Patrick Mayeux · 2018 · Blood Advances
- Peptidomics: A Review of Clinical Applications and MethodologiesRachel E. Foreman, Amy L. George, Frank M. Reimann, Fiona Mary Gribble, Richard G. Kay · 2021 · Journal of Proteome Research
- Streamlined Protocol for Deep Proteomic Profiling of FAC-sorted Cells and Its Application to Freshly Isolated Murine Immune Cells*Samuel A. Myers, Andrew Rhoads, Alexandra R. Cocco, Ryan Peckner, Adam L. Haber, Lawrence D. Schweitzer, Karsten Krug, D.R. Mani, Karl R. Clauser, Orit Rozenblatt–Rosen et al. · 2019 · Molecular & Cellular Proteomics
- An ESCRT-LEM protein surveillance system is poised to directly monitor the nuclear envelope and nuclear transport systemDavid J. Thaller, Matteo Allegretti, Sapan Borah, Paolo Ronchi, Martin Beck, C. Patrick Lusk · 2019 · eLife