Multiplexed analysis of chromosome conformation at vastly improved sensitivity

Davies, James O J, Telenius, Jelena M, McGowan, Simon J, Roberts, Nigel A, Taylor, Stephen, Higgs, Douglas R, Hughes, Jim R·2016·Nature Methods
DOI 10.1038/nmeth.3664

Cited by (269)

Items 201–269 of 269

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  10. Targeted high-resolution chromosome conformation capture at genome-wide scale
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  16. Deciphering High-Resolution 3D Chromatin Organization via Capture Hi-C
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  17. Enhancer Arrays Regulating Developmental Genes: Sox2 Enhancers as a Paradigm
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  18. Evidence for enhancer activity in intron 1 of TNFRSF1A using CRISPR/Cas9 in human induced pluripotent stem cell-derived macrophages
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  21. From Chromosome Conformation Capture to Polymer Physics and Back
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  22. Application of the 3C Method to Study the Developmental Genes in Drosophila Larvae
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  24. Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
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  25. Inferring causal genes at type 2 diabetes GWAS loci through chromosome interactions in islet cells.
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  27. CaptureProbe: a java tool for designing probes for capture Hi-C applications
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  28. A base-pair view of interactions between genes and their enhancers
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  29. MC4C: Locus-Specific Enhancer Hubs And Architectural Loop Collisions Uncovered From Single Allele DNA Topologies
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  30. Myeloid leukemia vulnerabilities at CTCF-enriched long noncoding RNA loci
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  31. Inferring causal genes at type 2 diabetes GWAS loci through chromosome interactions in islet cells
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  32. RNA-mediated SOX2 temporal dynamics govern dual chromatin-engagement modes at Nanog
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  33. Characterizing trajectory-like chromatin architectures with Fun2
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  34. Analysis of multi-way chromatin interactions at sub-nucleosome resolution identifies synergistic nano-scale interactions within super-enhancers
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  35. Epigenetic Rewiring of Enhancer–Promoter Interactions in Cancer: Mechanisms and Therapeutic Implications
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  36. Unraveling nuclear architecture
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  37. The impact of endogenous retroviruses on nuclear organization and gene expression
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  39. Commentary: Nuclear dynamics of the Set1C subunit Spp1 prepares meiotic recombination sites for break formation
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  40. Chromatin topology defines cell identity and phenotypic transition in human cancer and fungal pathogen
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  41. Myeloid leukemia vulnerabilities at CTCF-enriched long noncoding RNA loci
    Michelle Shu Wen Ng, Lonneke Verboon, Hasan Issa, Raj Bhayadia, Oriol Alejo-Valle, Dorit Borchert, K Schuschel, Enikő Regényi, Dirk Reinhardt, Marie‐Laure Yaspo et al. · 2021 · Research Square
  42. Correction to: Epigenetic and Transcriptional Networks Underlying Atrial Fibrillation
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  43. Bioinformatics analysis of multi-omics data elucidates the primary function of Oct4 in gene regulation and pluripotency maintenance
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  44. Faculty Opinions recommendation of Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.
    Amy L. Kenter · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  45. Reviewer #2 (Public Review): A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
    Arkadiy K. Golov, Alexey A. Gavrilov, Noam Kaplan · 2023 · eLife
  46. eLife Assessment: A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
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  47. A genome-wide nucleosome-resolution map of promoter-centered interactions in human cells corroborates the enhancer-promoter looping model
    Arkadiy K. Golov, Alexey A. Gavrilov, Noam Kaplan, Sergey V. Razin · 2024 · eLife
  48. Using paired-end read orientations to assess technical biases in capture Hi-C
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  49. Anti-Phase Clustering of Regulatory Factors Shapes Gene Transcription Burst
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  50. Sustained MYB activity drives emergent enhancer activation and precise enhancer-promoter interactions
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  51. Additional file 2 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  52. Additional file 5 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  53. Additional file 4 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  54. Additional file 3 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  55. Additional file 7 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  56. Additional file 6 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
  57. Additional file 1 of Multiple Fra-1-bound enhancers showing different molecular and functional features can cooperate to repress gene transcription
    Fabienne Bejjani, Emilie Evanno, Samantha Mahfoud, Claire Tolza, Kazem Zibara, Marc Piechaczyk, Isabelle Jariel‐Encontre · 2024 · Figshare
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  59. Fra-1 transcriptional mechanisms in Triple Negative Breast Cancer
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  65. A divide and conquer strategy for recapitulating whole genome 3D structure using Hi-C data
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  69. Activation of alpha-globin transcription in primary mouse erythroid progenitors
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