Multiplexed analysis of chromosome conformation at vastly improved sensitivity

Davies, James O J, Telenius, Jelena M, McGowan, Simon J, Roberts, Nigel A, Taylor, Stephen, Higgs, Douglas R, Hughes, Jim R·2016·Nature Methods

Cited by (269)

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  4. Iteratively improving Hi-C experiments one step at a time
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  9. Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C
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  12. Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling
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  13. Comprehensive epigenomic profiling reveals the extent of disease-specific chromatin states and informs target discovery in ankylosing spondylitis
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  15. The mouse alpha-globin cluster: a paradigm for studying genome regulation and organization
    Oudelaar, A Marieke, Beagrie, Robert A, Kassouf, Mira T, Higgs, Douglas R · 2021 · Current Opinion in Genetics & Development
  16. 3D genome organization links non-coding disease-associated variants to genes
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  17. MLL-AF4 cooperates with PAF1 and FACT to drive high-density enhancer interactions in leukemia
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  18. Altered regulation of DPF3, a member of the SWI/SNF complexes, underlies the 14q24 renal cancer susceptibility locus
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  31. capC-MAP: software for analysis of Capture-C data
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  32. Low-input Capture-C: A Chromosome Conformation Capture Assay to Analyze Chromatin Architecture in Small Numbers of Cells
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  33. Fine mapping chromatin contacts in capture Hi-C data
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  34. SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices
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  35. An integrated platform to systematically identify causal variants and genes for polygenic human traits
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  36. Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity
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  37. DDASSQ: An open‐source, multiple peptide sequencing strategy for label free quantification based on an OpenMS pipeline in the KNIME analytics platform
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  46. CTCF-binding element regulates ESC differentiation via orchestrating long-range chromatin interaction between enhancers and HoxA
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  47. Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops
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  55. Predictive Polymer Models for 3D Chromosome Organization
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  56. GOPHER: Generator Of Probes for capture Hi-C Experiments at high Resolution
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