Human genetic variation and the gut microbiome in disease

Structure, function and diversity of the healthy human microbiome

The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726

Diet rapidly and reproducibly alters the human gut microbiome

David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., Ling, A. V., Devlin, A. S., Varma, Y., Fischbach, M. A., et al. (2014) · Nature · doi:10.1038/nature12820 · Cited by 10,100

A core gut microbiome in obese and lean twins

Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823

Changes of Intestinal Functions in Liver Cirrhosis

Fukui, H., & Wiest, R. (2016) · Inflammatory Intestinal Diseases · doi:10.1159/000444436 · Cited by 6,820

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

Hugot, J.-P., Chamaillard, M., Zouali, H., Lesage, S., Cézard, J.-P., Belaiche, J., Almer, S., Tysk, C., O'Morain, C. A., Gassull, M., et al. (2001) · Nature · doi:10.1038/35079107 · Cited by 5,591

Revised Estimates for the Number of Human and Bacteria Cells in the Body

Sender, R., Fuchs, S., & Milo, R. (2016) · PLOS Biology · doi:10.1371/journal.pbio.1002533 · Cited by 5,425

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

Ogura, Y., Bonen, D. K., Inohara, N., Nicolae, D. L., Chen, F. F., Ramos, R., Britton, H., Moran, T., Karaliuskas, R., Duerr, R. H., et al. (2001) · Nature · doi:10.1038/35079114 · Cited by 5,030

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

Frank, D. N., St. Amand, A. L., Feldman, R. A., Boedeker, E. C., Harpaz, N., & Pace, N. R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706625104 · Cited by 4,611

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

Everard, A., Belzer, C., Geurts, L., Ouwerkerk, J. P., Druart, C., Bindels, L. B., Guiot, Y., Derrien, M., Muccioli, G. G., Delzenne, N. M., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1219451110 · Cited by 4,511

Recent advances in understanding cross-talk between Bile Acids and Gut Microbiota

Feng, C. C., Zhang, A. H., Miao, J., Sun, H., Han, Y., Gl, Y. G., Wu, F. F., & Wang, X. (2018) · Open Journal of Proteomics and Genomics · doi:10.17352/ojpg.000007 · Cited by 1

Nutrients seminal role in the development and epigenetic reprogramming during the first 1000 days of life

Veleri, S. (2021) · Elsevier eBooks · doi:10.1016/b978-0-323-85652-2.00015-4 · Cited by 1

Metagenomics Application in Understanding Rumen Functions

Trivedi, S., Kolte, A. P., Malik, P. K., Sejian, V., Mech, A., & Bhatta, R. (2021) · Springer eBooks · doi:10.1007/978-981-16-9836-1_20 · Cited by 1

Hepatic drug metabolism and gut microbiome

Mehrotra, T., & Maulik, S. K. (2022) · Progress in molecular biology and translational science · doi:10.1016/bs.pmbts.2022.07.005 · Cited by 1

Topical Aspects of Intestinal Dysbiosis in Children

Kozlovsky, A. A. (2023) · Педиатрия Восточная Европа · doi:10.34883/pi.2022.10.4.012 · Cited by 1

Microbiome therapeutics

Bhardwaj, M., & Yadav, M. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-99336-4.00007-0 · Cited by 1

Human Microbiome and Lifestyle Disorders

Gupta, A., & Jha, A. (2023) · Springer eBooks · doi:10.1007/978-981-99-1463-0_10 · Cited by 1

The role of probiotics in current algorithms for the treatment of irritable bowel syndrome: A review

Андреев, Д. Н., & Maev, I. V. (2023) · Consilium Medicum · doi:10.26442/20751753.2023.5.202131 · Cited by 1

Interaction of SARS-CoV-2 with gut microbiota

Soldatova, O. V., Goryanskaya, I. Y., Namazova, L. E., & Abramova, K. I. (2023) · Экспериментальная и клиническая гастроэнтерология · doi:10.31146/1682-8658-ecg-220-12-59-67 · Cited by 1

Impact of COVID-19 on gut–lung microbiota a mini review

Emadi, R., Yousefi, P., & Tabibzadeh, A. (2025) · Reviews in Medical Microbiology · doi:10.1097/mrm.0000000000000423 · Cited by 1

Immuno-oncological Challenges and Chemoresistance in Veterinary Medicine: Probiotics as a New Strategic Tool

Nisar, M. F., Yan, T., Cai, Y., & Wan, C. C. (2025) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-025-10468-8 · Cited by 2

Characteristics of Polyphenols of Black Hulless Barley Bran and Its Anti-Diabetic Activity

Deng, J., Liu, T., Chen, X., Tong, L., Gu, C., Shi, Z., Yang, Y., Zhan, R., Xiang, Z., Chen, J., et al. (2025) · Foods · doi:10.3390/foods14172994 · Cited by 1

Assessment of the microecological status of the rumen of cattle using the 16S Metagenomics method

Duskaev, G. K., Atlanderova, K. N., Yausheva, Е., Nurzhanov, B. S., Фархитдинович, Р. А., Makaeva, A. M., & Levakhin, G. I. (2021) · IOP Conference Series Earth and Environmental Science · doi:10.1088/1755-1315/677/4/042010 · Cited by 1

Nutritional Status and the Critically Ill Patient: Gut Microbiota and Immuno-Nutrition in I.C.U. at the Time of SARS-COV 2 Pandemic

Scarpellini, E., Scarcella, M., Romanelli, G., Basilico, M., Lattanzi, E., Rasetti, C., Abenavoli, L., & Santori, P. (2021) · Gastroenterology Insights · doi:10.3390/gastroent12020022 · Cited by 2

Gastrointestinal Tract and COVID-19

Lelo, A. P., & Zinedine, A. (2021) · Advances in medical diagnosis, treatment, and care (AMDTC) book series · doi:10.4018/978-1-7998-8225-1.ch008 · Cited by 1

Some Infections May Be Endogenous

Salerian, A. J. (2021) · Biomedical and Translational Science · doi:10.33425/2768-4911.1006 · Cited by 1

Microbiota, Sports and Exercise Medicine

Shen, K., & Shen, B. (2022) · Springer eBooks · doi:10.1007/978-981-16-9162-1_4 · Cited by 1

Immunity to Bacterial Pathogens and the Microbiome

Carlberg, C., & Velleuer, E. (2022) · Springer eBooks · doi:10.1007/978-3-031-04025-2_7 · Cited by 1

Possible factors determining efficacy of fecal microbiota transplantation. Review

Ткач, С. М., Kharchenko, N. V., & Dorofeev, A. E. (2022) · Modern Gastroenterology · doi:10.30978/mg-2022-1-48

Changes in the Intestinal Microbiota in Patients with Chronic Pancreatitis: Systematizing Literature Data

Maev, I. V., Levchenko, A. I., & Андреев, Д. Н. (2022) · Russian Journal of Gastroenterology Hepatology Coloproctology · doi:10.22416/1382-4376-2022-32-4-17-26 · Cited by 1

Immunity to Bacterial Pathogens and the Microbiome

Carlberg, C., Velleuer, E., & Molnár, F. (2023) · Springer eBooks · doi:10.1007/978-3-031-27133-5_20 · Cited by 1

High-resolution temporal profiling of the gut microbiome through the whole life of micePreprint

Takayasu, L., Watanabe, E., Umeyama, T., Kurokawa, R., Maskawa, R., Basu, S., Ogata, Y., Kiguchi, Y., Masuoka, H., Umezaki, M., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.11.07.515511 · Cited by 1

The gut microbiome and gut-liver axis in NAFLDPreprint

Guo, C., Ji, J., Wu, J., Wu, L., Feng, J., Li, J., Yu, Q., Dai, W., Li, Y., & Zheng, Y. (2024) · doi:10.22541/au.170666810.08665505/v1

It takes a village : Exploring the effect of antibiotics and other modulators on raising the infant gut microbiota

Daele, E. V. (2024) · doi:10.18174/656497 · Cited by 1

Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approachPreprint

Joshi, J., Cumbo, F., & Blankenberg, D. J. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.06.663394 · Cited by 3

Host genetic associations with the gut microbiota in HIV-1-infected subjects: a pilot exploratory studyPreprint

Guillén, Y., Noguera-Julián, M., Rivera, J., Casadellà, M., Rocafort, M., Parera, M., Mothe, B., Coll, J., Saz, J., Navarro, J., et al. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/427922

Sources of Variation in the Microbiome of Pre-Weaned Dairy Calves

Huffard, H. G. (2019) · VTechWorks (Virginia Tech)

Role of Genome-Wide Association Studies in Host Genetics: Toward Understanding of Microbiome Association

Dahiya, R., Mohammad, T., & Hassan, M. I. (2020) · Springer eBooks · doi:10.1007/978-981-15-8562-3_2

Концепция супердонора и другие возможные факторы эффективности трансплантации фекальной микробиоты

Ткач, С. М., Dorofeev, A. E., & Kuzenko, Y. G. (2020) · GASTROENTEROLOGY · doi:10.22141/2308-2097.54.3.2020.211740

Landscape of Lipidomic Metabolites in Gut-liver Axis of Sprague-Dawley Rats after Oral Exposure to Titanium Dioxide NanoparticlesPreprint

Chen, Z., Han, S., Zheng, P., Zhang, J., Zhou, S., & Jia, G. (2020) · Research Square · doi:10.21203/rs.3.rs-84918/v1

Modulating the immune system and intestinal barrier integrity with functional oligosaccharides

Figueroa‐Lozano, S. (2021) · University of Groningen research database (University of Groningen / Centre for Information Technology) · doi:10.33612/diss.151659844

Detection of Sparse and Weak Effects in High-Dimensional Supervised Learning Problems, Applied to Human Microbiome Data

Lindahl, F. (2020) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

FAIR and bias-free network modules for mechanism-based disease redefinitions

Hassan, A. (2021) · Research Publications (Maastricht University) · doi:10.26481/dis.20210707ah

A preclinical randomized multicenter trial of anti-IL-17A treatment for acute ischemic strokePreprint

Gelderblom, M., Koch, S., Strecker, J., Jørgensen, C., García‐Bonilla, L., Ludewig, P., Bernreuther, C., Pinnschmidt, H. O., Arumugam, T. V., Thomalla, G., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.09.29.462381

Sur la théorie de la résonance stochastique à temps discret et son application en détection

Zozor, S. (1999)

[The therapeutic use of potassium chloride in arrhythmia].

Tp, C. (1967) · PubMed

THE EFFECT OF HOST GENETICS ON THE SECOND GENOME: THE GUT MICROBIOTA

(2021) · International Journal of Biology Pharmacy and Allied Sciences · doi:10.31032/ijbpas/2021/10.8.5592

Peer Review #2 of "GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data (v0.1)"

(2018) · PeerJ · doi:10.7287/peerj.4600v0.1/reviews/2

Peer Review #1 of "GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data (v0.2)"

(2018) · PeerJ · doi:10.7287/peerj.4600v0.2/reviews/1

Peer Review #2 of "GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data (v0.2)"

(2018) · PeerJ · doi:10.7287/peerj.4600v0.2/reviews/2

References

(2018) · Elsevier eBooks · doi:10.1016/b978-0-12-811351-6.00026-7

Peer Review #1 of "GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data (v0.1)"

(2018) · PeerJ · doi:10.7287/peerj.4600v0.1/reviews/1

Faculty Opinions recommendation of Host genetic determinants of the gut microbiota of wild mice.

Horton, M. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.735849059.793570410

Peer Review #1 of "GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data (v0.3)"

(2018) · PeerJ · doi:10.7287/peerj.4600v0.3/reviews/1

Faculty Opinions recommendation of A critical review of the bacterial baptism hypothesis and the impact of cesarean delivery on the infant microbiome.

Hall, L. J. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733273218.793574625

Inflammation, microbiome and colorectal cancer disparity in African-Americans: Are there bugs in the genetics?

Ahmad, S., Ashktorab, H., Brim, H., & Housseau, F. (2022) · World Journal of Gastroenterology · doi:10.3748/wjg.v28.i25.2783

Linking traumatic brain injury and nosocomial infections

Bouras, M., Asehnoune, K., & Roquilly, A. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-823347-4.00040-3

Multiobjective nonlinear model predictive control of the microbial processPreprint

Srid, N. (2022) · Research Square · doi:10.21203/rs.3.rs-1946678/v1

The gut microbiome as a therapeutic target in systemic disease

Morrissette, M. (2021) · Digital Repository Service (Northeastern University) · doi:10.17760/d20423512

Unravelling the Environmental Variance of Litter Size Through the Genome and Gut Microbiome

Casto‐Rebollo, C. (2023) · RiuNet (Universitat Politècnica de València) · doi:10.4995/thesis/10251/192460

Multi-omics analysis of gut-organ axes reveals the environmental adaptation mechanisms in Tibetan chickenPreprint

Zeng, T., Cao, Y., Tian, Y., Yin, J., Gu, T., Feng, P., Sun, H., Ma, X., Zhao, Z., Li, G., et al. (2023) · Research Square · doi:10.21203/rs.3.rs-3028269/v1

Microbiome abnormalities and retinal disease

Barr, L. C., Hazari, H., & Rullo, J. (2023) · Elsevier eBooks · doi:10.1016/b978-0-323-98338-9.00010-4

Multiobjective Nonlinear Model Predictive Control of the Microbial Process

(2023) · Archives of Clinical and Medical Microbiology · doi:10.33140/acmmj.02.02.04

Morphological features and microbiota of the small intestine

Kuznetsov, А. V., Sorokin, О. V., Kostina, L. Y., Karpov, M. A., Надеев, А. П., Dolgov, V. V., & Glazkov, A. A. (2023) · JOURNAL of SIBERIAN MEDICAL SCIENCES · doi:10.31549/2542-1174-2023-7-4-7-22

Additional file 2 of Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

Breuninger, T. A., Wawro, N., Breuninger, J., Reitmeier, S., Clavel, T., Six-Merker, J., Pestoni, G., Rohrmann, S., Rathmann, W., Peters, A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14228285

Additional file 5 of Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

Breuninger, T. A., Wawro, N., Breuninger, J., Reitmeier, S., Clavel, T., Six-Merker, J., Pestoni, G., Rohrmann, S., Rathmann, W., Peters, A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14228294

Customised Microbiome Restoration Approaches in Older People: Perspectives and Therapeutic Prospects

Rajalakshmi, M., Vijayalakshmi, P., & Indu, S. (2024) · Springer eBooks · doi:10.1007/978-981-99-8803-7_10

Potential role of gastro-intestinal microbiota in terrestrial snails

Idczak-Figiel, P. A., & Nowakowska, A. (2024) · Folia Biologica · doi:10.3409/fb_72-2.05

An integrated approach to the preservation of reproductive material in patients with oncological pathology

Лапина, И. А., Dobrokhotova, Y. E., Александровна, М. А., Sorokin, Y. А., Chirvon, T. G., Gomzikova, V. M., Витальевич, Т. В., & Алексеевна, О. М. (2024) · Consilium Medicum · doi:10.26442/20751753.2024.7.202838

The gut-brain axis and schizophrenia

Muthukumaran, M., & Dharumadurai, D. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-22348-8.00009-x

References

(2024) · Elsevier eBooks · doi:10.1016/b978-0-443-23565-8.09996-8

The Gut Microbiome

Roychoudhuri, K., Santra, S., Goswami, R., & Pal, B. (2024) · Advances in medical diagnosis, treatment, and care (AMDTC) book series · doi:10.4018/979-8-3693-8267-7.ch008

Genotype–microbiome–metabolome associations in early childhood and their link to BMI

Aparicio, A., Sun, Z., Gold, D. R., Lasky-Su, J. A., Litonjua, A. A., Weiss, S. T., Lee‐Sarwar, K. A., & Liu, Y. (2024) · mLife · doi:10.1002/mlf2.12153 · Cited by 2

A bi-variate framework to model microbiome resilience in healthy dogs

Mainardi, F., Garcia‐Garcerà, M., & Nash, A. K. (2025) · Frontiers in Veterinary Science · doi:10.3389/fvets.2025.1486679

Gut microbial composition and diversity varies by CREBRF genotype among Samoan infants

Oyama, S., Arslanian, K. J., Sardaro, M. L. S., Duckham, R. L., Kershaw, E. E., Wood, A. N., Fidow, U. T., Naseri, T. K., Reupena, M. S., Amato, K. R., et al. (2025) · Physiological Genomics · doi:10.1152/physiolgenomics.00014.2024

Assessment of the Gut Microbiome and Its Correlation with Sex in Infants with Phenylketonuria

Akhattab, A., Janahi, S. E., Boudar, Z., Yacoubi, F. A. E., Kettani, Z. E., Hamdi, S., Idrissi, N. A., Dini, N., & Ghazal, H. (2025) · Lecture notes in networks and systems · doi:10.1007/978-3-031-91337-2_24

Differential susceptibility to colonic ulceration in mice with genetic deletion of Prostaglandin E synthasePreprint

Nakanishi, M., Martinez, M. J., Sztachelski, P., Leclerc, M., & Rosenberg, D. W. (2025) · Research Square · doi:10.21203/rs.3.rs-6977322/v1

Marine nutraceuticals: A solution for digestive tract health

Liyanage, N. M., Nagahwatta, D. P., & Jeon, Y. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-29843-1.00005-7

Beyond the plate: A pilot study exploring the microbial landscape of omnivores and vegans through 16S rRNA gene amplicon sequencing and metagenomics

Wenderlein, J., Burkhardt, W., Dietrich, S., Trefflich, I., Penczynski, K. J., Thomas, K., Salzinger, C., Abraham, K., Malorny, B., Weikert, C., et al. (2025) · Clinical Nutrition ESPEN · doi:10.1016/j.clnesp.2025.08.008

Microbiota, metabolic disorders, and pharmacological opportunities

Martín-Chaves, L., de Fonseca, F. R., Jiménez-Navarro, M. F., Criado, A. S., & Pavón, F. J. (2025) · Elsevier eBooks · doi:10.1016/b978-0-443-27370-4.00030-5

HoloSimR: a comprehensive framework for simulating breeding programs including the hologenome scenario

Casto‐Rebollo, C., Pocrnić, I., Gorjanc, G., & Ibáñez‐Escriche, N. (2025) · Journal of Animal Science · doi:10.1093/jas/skaf371

Demystifying the association of the gut–TMAO–heart axis: focusing on gut microbiota in myocardial infarction

Maharana, K. C., Adsule, M., Rajkumar, M., Vishwas, G., & Singh, S. (2025) · Next research. · doi:10.1016/j.nexres.2025.101133

Additional file 5 of Gut microbiota of the threatened takahē: biogeographic patterns and conservation implications

West, A. G., DeLaunay, A., Marsh, P., Perry, E. K., Jolly, M., Gartrell, B. D., Pas, A., Digby, A., & Taylor, M. W. (2022) · Figshare · doi:10.6084/m9.figshare.19069872

Additional file 3 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647386

Additional file 1 of Landscape of lipidomic metabolites in gut-liver axis of Sprague–Dawley rats after oral exposure to titanium dioxide nanoparticles

Chen, Z., Han, S., Zheng, P., Zhang, J., Zhou, S., & Jia, G. (2022) · Figshare · doi:10.6084/m9.figshare.20430492

Additional file 9 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647404

Additional file 14 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647419

Additional file 4 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647389

Additional file 1 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2023) · Figshare · doi:10.6084/m9.figshare.24708964

Additional file 10 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647407

Additional file 1 of Relative abundance data can misrepresent heritability of the microbiome

Bruijning, M., Ayroles, J. F., Henry, L. P., Koskella, B., Meyer, K., & Metcalf, C. J. E. (2023) · Figshare · doi:10.6084/m9.figshare.24277149

Additional file 1 of The beneficial effects of commensal E. coli for colon epithelial cell recovery are related with Formyl peptide receptor 2 (Fpr2) in epithelial cells

Chen, K., McCulloch, J. A., Neves, R. D., Rodrigues, G., Hsieh, W.-T., Gong, W., Yoshimura, T., Huang, J., Ó’hUigín, C., Difilippantonio, S., et al. (2023) · Figshare · doi:10.6084/m9.figshare.23529127

Additional file 12 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647413

Additional file 6 of Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

Breuninger, T. A., Wawro, N., Breuninger, J., Reitmeier, S., Clavel, T., Six-Merker, J., Pestoni, G., Rohrmann, S., Rathmann, W., Peters, A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14228297

Additional file 3 of Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

Breuninger, T. A., Wawro, N., Breuninger, J., Reitmeier, S., Clavel, T., Six-Merker, J., Pestoni, G., Rohrmann, S., Rathmann, W., Peters, A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14228288

Additional file 6 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647395

Additional file 11 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647410

Additional file 5 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647392

Additional file 13 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647416

Additional file 2 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.24709099

Additional file 8 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647401

Additional file 7 of Changes of gut microbiota and short chain fatty acids in patients with Peutz–Jeghers syndrome

Zhou, A., Tang, B., Xie, Y., Li, S., Xiao, X., Wu, L., Tu, D., Wang, S., Feng, Y., Feng, X., et al. (2024) · Figshare · doi:10.6084/m9.figshare.26647398

Additional file 4 of Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation

Breuninger, T. A., Wawro, N., Breuninger, J., Reitmeier, S., Clavel, T., Six-Merker, J., Pestoni, G., Rohrmann, S., Rathmann, W., Peters, A., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14228291

Genetic evidence on chemical communication between gut microbiota and neurological and psychiatric disorders: a Mendelian randomization study

Yu, S., Ye, Z., Zhao, W., Yu, X., Qiu, Y., Lin, K., Lu, T., Ge, L., Sun, J., & Hua, R. (2026) · European Archives of Psychiatry and Clinical Neuroscience · doi:10.1007/s00406-025-02147-0 · Cited by 1

Uncovering the relationship between the human ocular surface microbiome and gut microbiome

Eldridge, N., Spörri, L. A., Kreuzer, M., Haldimann, G., Zinkernagel, M. S., & Zysset‐Burri, D. C. (2026) · BMC Microbiology · doi:10.1186/s12866-026-04878-z

The Relationship Between pks+ Escherichia coli and Colorectal Cancer: A Review

Ulziitsogt, B., Batbold, C., Sumiyabazar, T., Dashjamts, G., Tsedendorj, Y., Badamjav, T., Dondov, G., Lonjid, T., & Batsaikhan, B. (2026) · ASIDE Oncology · doi:10.71079/aside.onc.032526533

Gut Luminal Exosomes in Young and Old Mice: Multi‐Omic Characteristics and Regulation of Gut Permeability

Khalyfa, A., Zhen, L., Joshi, T., & Gozal, D. (2026) · Aging Cell · doi:10.1111/acel.70455

Challenges and barriers to implementing microbiome analysis in clinical practice

Sahoo, G. C., Topno, R. K., Kumar, M., Bhoi, B., Rana, S., & Pandey, K. K. (2026) · Elsevier eBooks · doi:10.1016/b978-0-443-40483-2.00041-8

The bacteria of a fig community

Woodruff, G., Moser, K. A., & Wang, J. (2026) · Microbiology Spectrum · doi:10.1128/spectrum.03013-24

Oxycodone self-administration and genetic background exert community-specific effects in the gut microbiome

Duffy, E. P., Sterrett, J. D., Hale, L. H., Ward, J. O., Saba, L. M., Frank, D. N., Bachtell, R. K., & Ehringer, M. A. (2026) · Scientific Reports · doi:10.1038/s41598-026-41666-1

THE EFFECT OF HOST GENETICS ON THE SECOND GENOME: THE GUT MICROBIOTA

(2021) · International Journal of Biology Pharmacy and Allied Sciences · doi:10.31032/ijbpas/2021/10.8.5592

Host genetic variation impacts microbiome composition across human body sites

Blekhman, R., Goodrich, J. K., Huang, K., Sun, Q., Bukowski, R., Bell, J. T., Spector, T. D., Keinan, A., Ley, R. E., Gevers, D., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0759-1 · Cited by 745

The gut microbiome as an effector of metabolic disease gene variants

Simpson, R. C., Cutler, H. B., James, D. E., & Masson, S. W. C. (2026) · Trends in Genetics · doi:10.1016/j.tig.2026.03.011

RESEARCH Open Access Host genetic variation impacts microbiome composition across human body sites

Blekhman, R., Goodrich, J. K., Huang, K. H., Sun, Q., Bukowski, R., Bell, J. T., Spector, T. D., Keinan, A., Ley, R. E., Gevers, D., et al. (2016)

GENETIC VARIATION IN INNATE IMMUNE GENES SHAPES GUT MICROBIOTA COMPOSITION AND HOST-MICROBE INTERACTIONS: A REVIEW

Majeed, M., Sajid, R., Sehar, A., & Akram, M. Z. (2026) · Kashf Journal of Multidisciplinary Research · doi:10.71146/kjmr809 · Cited by 2