Dynamic regulation of transcriptional states by chromatin and transcription factors

Stochastic Gene Expression in a Single Cell

Elowitz, M. B., Levine, A. J., Siggia, E. D., & Swain, P. S. (2002) · Science · doi:10.1126/science.1070919 · Cited by 5,441

Network motifs: theory and experimental approaches

Alon, U. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2102 · Cited by 3,279

A decade of exploring the cancer epigenome—biological and translational implications

Baylin, S. B., & Jones, P. A. (2011) · Nature Reviews Cancer · doi:10.1038/nrc3130 · Cited by 2,871

The accessible chromatin landscape of the human genome

Thurman, R. E., Rynes, E., Humbert, R., Vierstra, J., Maurano, M. T., Haugen, E., Sheffield, N. C., Stergachis, A. B., Wang, H., Vernot, B., et al. (2012) · Nature · doi:10.1038/nature11232 · Cited by 2,679

The biology of chromatin remodeling complexes.

Clapier, C. R., & Cairns, B. (2009) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.77.062706.153223 · Cited by 2,384

Stochasticity in gene expression: from theories to phenotypes

Kærn, M., Elston, T. C., Blake, W. J., & Collins, J. J. (2005) · Nature Reviews Genetics · doi:10.1038/nrg1615 · Cited by 2,318

Transcription factors: from enhancer binding to developmental control

Spitz, F., & Furlong, E. E. M. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3207 · Cited by 2,227

Stability and flexibility of epigenetic gene regulation in mammalian development

Reik, W. (2007) · Nature · doi:10.1038/nature05918 · Cited by 1,963

Stochastic mRNA Synthesis in Mammalian Cells

Raj, A., Peskin, C. S., Tranchina, D., Vargas, D. Y., & Tyagi, S. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040309 · Cited by 1,737

Intrinsic and extrinsic contributions to stochasticity in gene expression

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Cellular plasticity of cancer: roles of biomolecular condensates and ecDNA

Sugimoto, Y., Zhang, Y., Kachi, T., Ogami, K., & Suzuki, H. I. (2026) · Japanese Journal of Clinical Oncology · doi:10.1093/jjco/hyag065 · Cited by 1

Transcription factors operate TATA switches via rotational remodeling of local columnar chromatin structure

Trifonov, E. N. (2016) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2015.1134348 · Cited by 1

Current Epigenetic Perspective on Diabetes: Who Regulates the Regulators?

Keating, S. T. (2015) · Cellular & Molecular Medicine Open access · doi:10.21767/2573-5365.100007 · Cited by 1

Unrealistic phylogenetic trees may improve phylogenetic footprinting

Nettling, M., Treutler, H., Cerquides, J., & Große, I. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx033 · Cited by 1

Genomic mapping of chromatin proteins by using Daminv modification of an FLP-dependent DamID approach

Pindyurin, A. V. (2017) · Doklady Biochemistry and Biophysics · doi:10.1134/s1607672917010057 · Cited by 1

Integrative Analysis of Epigenomics Data

Taslim, C., Lessnick, S. L., & Lin, S. M. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-814513-5.00007-6 · Cited by 1

CanMod

Do, D., & Bozdag, S. (2020) · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB) · doi:10.1145/3388440.3415586 · Cited by 1

Best practices for the ATAC-seq assay and its data analysis

Liu, H., Li, R., Hu, K., Ou, J., Pak, M. L., Green, M. R., & Zhu, L. J. (2024) · Elsevier eBooks · doi:10.1016/b978-0-12-817218-6.00016-4 · Cited by 1

Differences in Histone Modifications Between Individuals

Zimmermann, C. A., Hoffmann, A., Binder, E. B., & Spengler, D. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-420135-4.00003-6 · Cited by 1

A Mathematical Model for Enhancer Activation Kinetics During Cell Differentiation

Nousiainen, K., Intosalmi, J., & Lähdesmäki, H. J. (2019) · Lecture notes in computer science · doi:10.1007/978-3-030-18174-1_14 · Cited by 1

Integrated rate laws for processive and distributive enzymatic turnover

Barel, I., Reich, N. O., & Brown, F. L. H. (2019) · The Journal of Chemical Physics · doi:10.1063/1.5097576 · Cited by 1

Dysregulation of Cis-Regulatory Elements in Cancer

Barbour, J. A., & Wong, J. W. H. (2019) · Springer eBooks · doi:10.1007/978-981-13-8958-0_8 · Cited by 1

Optimization of synthetic molecular reporters for a mesenchymal glioblastoma transcriptional program by integer programing

Breitenbach, T., Schmitt, M. J., & Dandekar, T. (2022) · Bioinformatics · doi:10.1093/bioinformatics/btac488 · Cited by 1

Eukaryotic Transcriptional Regulation

Lewis, B. A. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-394447-4.10050-1 · Cited by 1

A general theory of individuated multicellularityPreprint

Veloso, F. A. (2015) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/016840 · Cited by 1

Systems Integration Tool: uma ferramenta para integração e visualização de dados em larga escala e sua aplicação em cana-de-açúcar

Piovezani, A. R. (2019) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.95.2019.tde-25062019-222743 · Cited by 1

Differential regulation of alternative promoters emerges from unified kinetics of enhancer-promoter interactionPreprint

Wang, J., Zhang, S., Lu, H., & Xu, H. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.03.446994 · Cited by 1

Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damagePreprint

Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q. H., & Zhang, J. (2025) · eLife · doi:10.7554/elife.100623.2 · Cited by 2

Kinetic proofreading as a mechanism for transcriptional specificity in living human cellsPreprint

Kim, J. M., Ball, D. A., Johnson, T. A., DInzeo, C., Cho, H. J., Ozbun, L. L., Karpova, T., Pegoraro, G., & Larson, D. R. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.17.711757 · Cited by 1

Role of BRD4 and histone acetylation in estrogen receptor-positive breast cancers

Nagarajan, S. (2015) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-5252

Aberrant Transcriptional Programming in Blood Cancers

Bonifer, C., Cockerill, P. N., & Ptasinska, A. (2015) · Springer eBooks · doi:10.1007/978-3-319-19983-2_22

Dissertation zur Erlangung des Doktorgrades der Fakultät für Chemie und Pharmazie der Ludwig-Maximilians-Universität München Epigenetic gene regulation by TET3 and 5-hydroxymethylcytosine during retinal maturation

Perera, A. (2015)

Peroxisome Proliferator-Activated Receptor Alpha: Insight into the Structure, Function and Energy Homeostasis

Oswal, D. P. (2014) · CORE Scholar (Wright State University)

Identification and characterization of E2A-PBX1 genomic binding sites using ChIP-seq and bioinformatics

Nanan, K. K. (2014) · QSpace (Queen's University Library)

The Role of SWI/SNF Chromatin Remodeling Complexes in Hormone

Sacharowski, S., Cwiek, P., Tohge, T., Fernie, A. R., SIEDLECKI, J. A., Koncz, C., & Sarnowski, T. J. (2016)

Computational identification and functional characterisation of candidate DNA binding effectors in Phytophthora

Motion, G. B. (2015) · Discovery Research Portal (University of Dundee)

The Role of CHD1 during Mesenchymal Stem Cell Differentiation

Baumgart, S. J. (2017) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-5923

Yy1 Gene Dosage Effect and Allele-Specific Expression Analysis of Peg3

Perera, B. P. U. (2016) · doi:10.31390/gradschool_dissertations.3968

Environmental Exposures and Developmental Programming of the Lung

Weinheimer, C., Ruybal, L., & Joss‐Moore, L. A. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.64262-9

Epigenetics and Chromatin Remodeling

Kinyamu, H. K., Mackey, L. C., Crusselle‐Davis, V. J., & Archer, T. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.65388-6

Identification and characterization of an A-form DNA promoter and its downstream novel Rab-Gdi gene in Xenopus

Nazlamova, L. (2016)

Investigating the role of mRNA capping enzyme in C-MYC function

Lombardi, O. (2017) · Discovery Research Portal (University of Dundee)

ГЕНОМНОЕ КАРТИРОВАНИЕ БЕЛКОВ ХРОМАТИНА ПРИ ПОМОЩИ МОДИФИКАЦИИ Dam FLP-ЗАВИСИМОГО МЕТОДА DamID, "Доклады Академии наук"

Pindyurin, A. V. (2017) · Доклады Академии наук · doi:10.7868/s0869565217020268

Inference and Analysis of Multilayered Mirna-Mediated Networks in Cancer

Do, D. (2018) · e-Publications@Marquette (Marquette University)

Investigation of the Role and Regulation of Histone H2B Ubiquitylation in Transcription

Wozniak, G. G. (2019) · Carolina Digital Repository (University of North Carolina at Chapel Hill) · doi:10.17615/pjnh-kr76

Mitochondrial control of gene expression and extrinsic apoptosis

Colunga, J. D. (2019) · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)

Molecular investigation of Notch signalling on transcriptional regulation of the human Complement Receptor 2 (CD21/CR2) gene

Ng, H. K. H. (2019) · UWA Profiles and Research Repository (UWA) · doi:10.26182/5d672ae057acb

Caracterização e desenvolvimento de moléculas ligantes de nucleossomo : impacto do colesterol e de peptídeos desenhados in silico sobre a cromatina

da Silva, I. T. G. (2017) · doi:10.26512/2017.01.t.36167

Transcription regulation dynamics

de Jonge, W. J. (2020) · doi:10.33540/73

Epigenetics and environmental programing of lung disease

Jessen, N., & Joss‐Moore, L. A. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-819968-8.00008-1

Genome-wide regulation of glucocorticoid signaling by SUMO modifications

Paakinaho, V. (2014) · UEF eRepo (University of Eastern Finland)

Caracterização funcional da superexpressão do fator de transcrição Azf1 na produção de celulases por Trichoderma reesei

Maués, D. B. (2021) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.17.2021.tde-11062021-072813

Recognition of nucleosomes by protein factors that regulate chromatin structure and dynamics

Lee, P. L. (2019) · DR-NTU (Nanyang Technological University) · doi:10.32657/10356/142395

Análise de dependência entre posições de bases de sequências motivos de fatores de transcrição aplicada à comparação de modelos baseados em Position Weight Matrix e Gramática Regular Estocástica

Lavezzo, G. M. (2021) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.95.2021.tde-18012022-104802

Faculty Opinions recommendation of Dynamic interplay between enhancer-promoter topology and gene activity.

Spivakov, M. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733676902.793549158

Faculty Opinions recommendation of Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation.

Hannenhalli, S. S. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.736591783.793568705

Faculty Opinions recommendation of Dynamic interplay between enhancer-promoter topology and gene activity.

Martı́-Renom, M. A. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.733676902.793550307

Faculty Opinions recommendation of The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells.

Blelloch, R. H. (2018) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.727397521.793549797

Chromatin Remodeling

Carlberg, C., & Molnár, F. (2016) · Springer eBooks · doi:10.1007/978-94-017-7741-4_11

Faculty Opinions recommendation of Diurnal suppression of EGFR signalling by glucocorticoids and implications for tumour progression and treatment.

Lamia, K. A. (2017) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.719129922.793537952

Faculty Opinions recommendation of Single-molecule long-read sequencing reveals the chromatin basis of gene expression.

Zhong, S. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.735984588.793561987

Study and Modeling of Biological Noise-Filtering Properties of Conserved Gene Regulatory Networks Motifs in Animal DevelopmentPreprint

Galvis, L. M. R., Machado, G., & Rodríguez, B. A. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.06.13.495911

Eukaryotic Transcriptional Regulation

Lewis, B. A., & Hardivillé, S. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00103-6

Analysis and synthesis of cellular decision making: modeling epigenetic regulation in cell fate networks and designing a distributed synthetic counter circuit

Chen, T. (2022) · Digital Repository Service (Northeastern University) · doi:10.17760/d20474742

Epigenetic and Proteomic Signatures for Chronic Pain Patients after Total Knee Replacement

Giordano, R. (2021) · VBN Forskningsportal (Aalborg Universitet) · doi:10.54337/aau451017562

Environmental Exposures and Developmental Programing of the Lung

Weinheimer, C., & Joss‐Moore, L. A. (2024) · Elsevier eBooks · doi:10.1016/b978-0-323-95488-4.00100-5

Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damagePreprint

Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q. H., & Zhang, J. (2024) · eLife · doi:10.7554/elife.100623.1 · Cited by 1

Author response: Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage

Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q. H., & Zhang, J. (2024) · eLife · doi:10.7554/elife.100623.1.sa2

Epigenetics and Chromatin Remodeling

Kinyamu, H. K., Theofilatos, D., Mackey, L. C., & Archer, T. (2025) · Elsevier eBooks · doi:10.1016/b978-0-323-95488-4.00260-6

Genetic regulation within cellular stress response pathways

Dufflart, J. (2022) · doi:10.54014/pkv0-hdaz

Additional file 1 of Skeletal muscle methylome and transcriptome integration reveals profound sex differences related to muscle function and substrate metabolism

Landen, S., Jacques, M., Hiam, D., Alvarez‐Romero, J., Harvey, N. R., Haupt, L. M., Griffiths, L. R., Ashton, K. J., Lamon, S., Voisin, S. A. C., et al. (2021) · Figshare · doi:10.6084/m9.figshare.16928387

Additional file 1 of One-pot universal NicE-seq: all enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics

Vishnu, U. S., Estève, P.-O., Chin, H. G., & Pradhan, S. (2021) · Figshare · doi:10.6084/m9.figshare.17163147

Additional file 2 of One-pot universal NicE-seq: all enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics

Vishnu, U. S., Estève, P.-O., Chin, H. G., & Pradhan, S. (2021) · Figshare · doi:10.6084/m9.figshare.17163150

Intermittent AP-1 activation in muscles contributes to exercise-induced health benefitsPreprint

Choubey, A., Kumar, S. U., Yang, T., Jager, J., Hong, S., Damle, M., Yin, H., Zhao, R., Song, C., Oturmaz, E. S., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.05.696542

eLife Assessment: Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage

Gómez-Schiavon, M. (2026) · eLife · doi:10.7554/elife.100623.3.sa2

Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damagePreprint

Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q. H., & Zhang, J. (2026) · eLife · doi:10.7554/elife.100623.3

Immunogenomic signatures defining the molecular subtypes of head and neck cancer

Gao, L., Wang, B., Wang, J., Chen, Y., Li, N., An, W., & Li, Z. (2026) · Discover Oncology · doi:10.1007/s12672-026-04518-y

Palladium-catalysed synthesis of small-molecule epigenetic inhibitors as anticancer therapeutics

Sharma, R., Rana, M., Thakur, A., Ojha, R., Mousavi, S. M., Dhingra, A., & Nepali, K. (2026) · Journal of Enzyme Inhibition and Medicinal Chemistry · doi:10.1080/14756366.2026.2621477

Author response: Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage

Huang, Z., Luo, S., Wang, Z., Zhang, Z., Jiang, B., Nie, Q. H., & Zhang, J. (2026) · eLife · doi:10.7554/elife.100623.4.sa2

Chromatin priming and co-factor availability shape lineage response to the neuronal pioneer factor ASCL1 in pluripotencyPreprint

Lundie-Brown, J., Drummond, R., Ng-Blichfeldt, J.-P., Azzarelli, R., & Philpott, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.03.19.712999

Epigenetic regulation of gene expression during melanocyte and melanoma development

Laurette, P. (2016) · theses.fr (ABES) · doi:10.70675/b22b69c4z85a0z409czaccczc882ea46e923

Investigation of E. coli genome complexity by means of fluorescent reporters of gene expression

Brambilla, E. (2014) · theses.fr (ABES) · doi:10.70675/9ef281afzaf9dz4424zb084ze3fa8699d2d8

Investigating the role of human HAT (histone acetyltransferase) containing complexes, ATAC and SAGA, in living cells

Vosnakis, N. (2014) · theses.fr (ABES) · doi:10.70675/5d9cbef9z606fz45a1za0a6z436a683e624d

Role of Poly-(ADP-ribose)-ylation signaling pathway in the chromatin remodeling after DNA damage

Sellou, H. (2016) · theses.fr (ABES) · doi:10.70675/c2e900e6zb02ez4a12zb3fazc621be99e611

Cellular factors controlling human L1 retrotransposition

Galantonu, R. N. (2017) · theses.fr (ABES) · doi:10.70675/f24810a8z4f50z444fz84f0z11863b900b95

Modélisation multi-échelles de réseaux biologiques pour l’ingénierie métabolique d'un châssis biotechnologique

Trébulle, P. (2019) · theses.fr (ABES) · doi:10.70675/0e82c666z013bz4790z8f3cz970b82e53b81

Applying Systems Biology and Multi-layered Profiling Towards a Comprehensive Understanding of Cell Aging

de Freitas, J. A. N. L. F. (2020) · theses.fr (ABES) · doi:10.70675/0e6e3614z3915z4fb8za2cdz24b40b9679b2

Real time imaging of transcription reveals new features of cellular and viral promoters

Kozulic-Pirher, A. (2018) · theses.fr (ABES) · doi:10.70675/0099e36bz620ez43d7z9b47z2789ed360d73

The role of SAGA deubiquitinase module in transcriptional regulation

Wang, F. (2020) · theses.fr (ABES) · doi:10.70675/8c77105dz96d8z46f4z8354z1e622ff20fbf

Epigenomic study on the domestication of the horse using ancient DNA

Poullet, M. (2022) · theses.fr (ABES) · doi:10.70675/afd704b6z444cz4392z8f50z1695fba1c117

Deep-Plant: a supervised foundation model for plant regulatory genomicsPreprint

Daoud, A., Roy, S., Zeng, H., Bao, X., Zhang, Z., Wang, J., Parodi, P. D., Reddy, A. S., Liu, J., & Ben‐Hur, A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.06.716755

Polarization as a Process: The Potential of Process Ontology for Understanding Cellular Symmetry Breaking

Glazenburg, M. M., & Laan, L. (2026) · BioEssays · doi:10.1002/bies.70135

Targeting Noncanonical TEAD Axis to Overcome DNA Repair-Driven ChemoresistancePreprint

Kim, D.-H., Kim, J., Kang, S., Kim, H.-R., Cho, S. C., Jin, H., Kim, I., Jung, E., Seo, H.-R., Lee, E. A., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.09.717588

Hijacked epigenomes: how bacterial effectors rewrite host gene expression

Ge, J. Y., Gao, Y., Zhang, R., Cao, M., & Zhang, Y. (2026) · Archives of Microbiology · doi:10.1007/s00203-026-04917-3

Defining the BTK-dependent chromatin-informed gene regulatory network in chronic lymphocytic leukemiaPreprint

Wang, Z., Han, W., Guo, Q., Darby, H. M., Sinha, S., Yu, C., Parikh, S., & Kay, N. E. (2026) · Research Square · doi:10.21203/rs.3.rs-9485118/v1

Chromatin accessibility of the jejunum in two high-yielding laying hen strains under divergent mineral phosphorus supply during the transition to egg laying

Abitew, Y. A., Reyer, H., Hadlich, F., Oster, M., Trakooljul, N., Sommerfeld, V., Rodehutscord, M., Wimmers, K., & Ponsuksili, S. (2026) · Animal nutrition · doi:10.1016/j.aninu.2026.01.015

Transcription factor Tono mediates histone H3K4 trimethylation to regulate endoreplication through transcriptional reprogramming

Li, H., Song, Y., Guo, M., Yuan, D., Zhang, X., Cheng, T., Peng, J., Wei, L., Xia, Q., Cheng, D., et al. (2026) · Science Advances · doi:10.1126/sciadv.aed9695

GRNContext: an interactive web platform for contextualized gene regulatory networks visualization across human cancers

Pezoa, I., Herńandez-Galaz, S., Rivas, J. D. L., Lladser, Á., Varas‐Godoy, M., & Martín, A. J. M. (2026) · Bioinformatics · doi:10.1093/bioinformatics/btag389

TaR3H interacts with Pm21 and confers powdery mildew resistance

Si, C., Dong, Z., Cao, S., Luo, C., Hao, S., Wang, W., Hu, W., Liu, M.-Y., Zhang, R., Liu, J. J., et al. (2026) · Journal of Experimental Botany · doi:10.1093/jxb/erag297

Broad-stroke regulation by DNA sequence-specific transcription factors

Bigelow, Z., & Nechaev, S. (2026) · Biochemistry and Cell Biology · doi:10.1139/bcb-2026-0135

Beyond the canonical view: steroid receptor network plasticity and mechanosensitive chromatin integration in breast cancer

García-García, J., Pérez, R. S., Nacht, A. S., Presman, D. M., Pecci, A., & Vicent, G. P. (2026) · NAR Cancer · doi:10.1093/narcan/zcag016

Observation of hidden dynamics underlying facilitated dissociation of proteins from DNA

Nepravishta, R., & Iwahara, J. (2026) · Chemical Communications · doi:10.1039/d6cc03731c

Inferring Gene Regulatory Networks in Stem Cells: Methods and Applications

Solano-Galarza, D., Roeh, S., & Walzthoeni, T. (2026) · Methods in molecular biology · doi:10.1007/978-1-0716-5539-9_1

Higher-order assembly and emergent persistence in biology

Vidiella, B., Anonymous, Fernández, R., Spiridonov, A., Sánchez, Á., Hussain, S. T., & Valverde, S. (2026) · Current Opinion in Systems Biology · doi:10.1016/j.coisb.2026.100608

Transposable element-mediated structural variations shape gene expression and agronomic trait diversity in Brassica napus

Tan, Z., Zheng, Y., Guan, Z., Zhong, R., Zhang, M., Wang, X., Yang, J., Zong, Z., Song, Y., Yang, Q., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-78567-w

Visualizing chromatin dynamics in intact cells

Voss, T. C., & Hager, G. L. (2008) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2008.06.022 · Cited by 27

Managing the Steady State Chromatin Landscape by Nucleosome Dynamics

Ahmad, K., Henikoff, S., & Ramachandran, S. (2022) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-032620-104508 · Cited by 27

Reprogramming the chromain landscape at eukaryotic regulatory elements

Hager, G. L. (2013) · Epigenetics & Chromatin · doi:10.1186/1756-8935-6-s1-o20 · Cited by 1

Molecular dynamics of epigenetic transitions

Hager, G. L. (2012) · The FASEB Journal · doi:10.1096/fasebj.26.1_supplement.467.1

Dynamic nucleosomes and gene transcription

Mellor, J. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.03.008 · Cited by 174