Dynamic regulation of transcriptional states by chromatin and transcription factors

Stochastic Gene Expression in a Single Cell

Elowitz, M. B., Levine, A. J., Siggia, E. D., & Swain, P. S. (2002) · Science · doi:10.1126/science.1070919 · Cited by 5,441

Network motifs: theory and experimental approaches

Alon, U. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2102 · Cited by 3,279

A decade of exploring the cancer epigenome—biological and translational implications

Baylin, S. B., & Jones, P. A. (2011) · Nature Reviews Cancer · doi:10.1038/nrc3130 · Cited by 2,871

The accessible chromatin landscape of the human genome

Thurman, R. E., Rynes, E., Humbert, R., Vierstra, J., Maurano, M. T., Haugen, E., Sheffield, N. C., Stergachis, A. B., Wang, H., Vernot, B., et al. (2012) · Nature · doi:10.1038/nature11232 · Cited by 2,679

The biology of chromatin remodeling complexes.

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Stochasticity in gene expression: from theories to phenotypes

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Transcription factors: from enhancer binding to developmental control

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Stability and flexibility of epigenetic gene regulation in mammalian development

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Stochastic mRNA Synthesis in Mammalian Cells

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Intrinsic and extrinsic contributions to stochasticity in gene expression

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Lysine-Specific Demethylase 1A (KDM1A/LSD1): Product Recognition and Kinetic Analysis of Full-Length Histones

Burg, J. M., Gonzalez, J. J., Maksimchuk, K. R., & McCafferty, D. G. (2015) · Biochemistry · doi:10.1021/acs.biochem.5b01135 · Cited by 26

Mathematical models of cell phenotype regulation and reprogramming: Make cancer cells sensitive again!

Wooten, D. J., & Quaranta, V. (2017) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2017.04.001 · Cited by 26

Managing the Steady State Chromatin Landscape by Nucleosome Dynamics

Ahmad, K., Henikoff, S., & Ramachandran, S. (2022) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-032620-104508 · Cited by 27

Differential regulation of alternative promoters emerges from unified kinetics of enhancer-promoter interaction

Wang, J., Zhang, S., Lu, H., & Xu, H. (2022) · Nature Communications · doi:10.1038/s41467-022-30315-6 · Cited by 25

Chromatin associations in Arabidopsis interphase nuclei

Schubert, V., Rudnik, R., & Schubert, I. A. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00389 · Cited by 27

Dynamic enhancer function in the chromatin context

Goldstein, I., & Hager, G. L. (2018) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.1390 · Cited by 25

Targeting Chromatin Complexes in Myeloid Malignancies and Beyond: From Basic Mechanisms to Clinical Innovation

Perner, F., & Armstrong, S. A. (2020) · Cells · doi:10.3390/cells9122721 · Cited by 25

Epigenome mapping highlights chromatin-mediated gene regulation in the protozoan parasite Trichomonas vaginalis

Song, M.-J., Kim, M.-K., Choi, Y., Yi, M., Kim, J., Park, S., Yong, T., & Kim, H. (2017) · Scientific Reports · doi:10.1038/srep45365 · Cited by 25

Connecting the dots: chromatin and alternative splicing in EMT

Warns, J. A., Davie, J., & Dhasarathy, A. (2015) · Biochemistry and Cell Biology · doi:10.1139/bcb-2015-0053 · Cited by 24

Crystal structures reveal a new and novel FoxO1 binding site within the human glucose-6-phosphatase catalytic subunit 1 gene promoter

Singh, P., Han, E. H., Endrizzi, J. A., O’Brien, R. M., & Chi, Y. (2017) · Journal of Structural Biology · doi:10.1016/j.jsb.2017.02.006 · Cited by 24

Chromatin structure and gene regulation: a dynamic view of enhancer function

Stavreva, D. A., & Hager, G. L. (2015) · Nucleus · doi:10.1080/19491034.2015.1107689 · Cited by 24

PPARγ lipodystrophy mutants reveal intermolecular interactions required for enhancer activation

Madsen, M. S., Broekema, M. F., Madsen, M. R., Koppen, A., Borgman, A., Gräwe, C., Thomsen, E. G. K., Westland, D., Kranendonk, M. E. G., Koerkamp, M. J. A. G., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-34766-9 · Cited by 26

Genome-Wide Association between Transcription Factor Expression and Chromatin Accessibility Reveals Regulators of Chromatin Accessibility

Lamparter, D., Marbach, D., Rueedi, R., Bergmann, S., & Kutalik, Z. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005311 · Cited by 23

Quantifying transcription factor–DNA binding in single cells in vivo with photoactivatable fluorescence correlation spectroscopy

Zhao, Z., White, M. D., Álvarez, Y. D., Zenker, J., Bissière, S., & Plachta, N. (2017) · Nature Protocols · doi:10.1038/nprot.2017.051 · Cited by 23

TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells

Xu, H., Wang, J., Liang, Y., Fu, Y., Li, S., Huang, J., Xu, H., Zou, W., & Chen, B. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa1170 · Cited by 23

Evolutionary conserved gene co-expression drives generation of self-antigen diversity in medullary thymic epithelial cells

Rattay, K., Meyer, H. V., Herrmann, C., Brors, B., & Kyewski, B. (2015) · Journal of Autoimmunity · doi:10.1016/j.jaut.2015.10.001 · Cited by 25

Chromatin reprogramming in breast cancer

Swinstead, E. E., Paakinaho, V., & Hager, G. L. (2018) · Endocrine Related Cancer · doi:10.1530/erc-18-0033 · Cited by 24

In vivo analysis reveals that ATP-hydrolysis couples remodeling to SWI/SNF release from chromatin

Tilly, B. C., Chalkley, G. E., van der Knaap, J. A., Moshkin, Y. M., Kan, T. W., Dekkers, D. H. W., Demmers, J., & Verrijzer, C. P. (2021) · eLife · doi:10.7554/elife.69424 · Cited by 22

“Hit‐and‐Run” leaves its mark: Catalyst transcription factors and chromatin modification

Varala, K., Li, Y., Marshall‐Colón, A., Para, A., & Coruzzi, G. M. (2015) · BioEssays · doi:10.1002/bies.201400205 · Cited by 22

Futures Challenges in Thyroid Hormone Signaling Research

Flamant, F. (2016) · Frontiers in Endocrinology · doi:10.3389/fendo.2016.00058 · Cited by 22

An augmentation in histone dimethylation at lysine nine residues elicits vision impairment following traumatic brain injury

Gupta, R. K., Saha, P., Sen, T., & Sen, N. (2019) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2019.02.015 · Cited by 22

Perspective on unraveling the versatility of ‘co-repressor’ complexes

Baymaz, H. I., Karemaker, I. D., & Vermeulen, M. (2015) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2015.06.012 · Cited by 22

Consequences of VHL Loss on Global DNA Methylome

Robinson, C. M., Lefebvre, F., Poon, B. P., Bousard, A., Fan, X., Lathrop, M., Tost, J., Kim, W. Y., Riazalhosseini, Y., & Ohh, M. (2018) · Scientific Reports · doi:10.1038/s41598-018-21524-5 · Cited by 21

The transcription factor PRO44 and the histone chaperone ASF1 regulate distinct aspects of multicellular development in the filamentous fungus Sordaria macrospora

Schumacher, D. I., Lütkenhaus, R., Altegoer, F., Teichert, I., Kück, U., & Nowrousian, M. (2018) · BMC Genetics · doi:10.1186/s12863-018-0702-z · Cited by 23

Chromatin accessibility-based characterisation of brain gene regulatory networks in three distinct honey bee polyphenisms

Lowe, R., Wojciechowski, M., Ellis, N., & Hurd, P. J. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac992 · Cited by 22

The GATA transcription factor GtaC regulates early developmental gene expression dynamics in Dictyostelium

Santhanam, B., Cai, H., Devreotes, P. N., Shaulsky, G., & Katoh‐Kurasawa, M. (2015) · Nature Communications · doi:10.1038/ncomms8551 · Cited by 21

Defining the Transcriptional Ecosystem

Silveira, M. A. D., & Bilodeau, S. (2018) · Molecular Cell · doi:10.1016/j.molcel.2018.11.022 · Cited by 22

ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen Candida albicans

Jenull, S., Tscherner, M., Mair, T., & Kuchler, K. (2020) · Journal of Fungi · doi:10.3390/jof6030182 · Cited by 23

Acetylation of lysine 109 modulates pregnane X receptor DNA binding and transcriptional activity

Pasquel, D., Dořičáková, A., Li, H., Kortagere, S., Krasowski, M. D., Biswas, A., Walton, W. G., Redinbo, M. R., Dvořák, Z., & Mani, S. (2016) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2016.01.006 · Cited by 22

Nuclear receptors and liver disease: summary of the 2017 basic research symposium

Tran, M., Liu, Y., Huang, W., & Wang, L. (2018) · Hepatology Communications · doi:10.1002/hep4.1203 · Cited by 20

Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes

Baek, S., & Sung, M. (2016) · Methods in molecular biology · doi:10.1007/978-1-4939-3578-9_12 · Cited by 20

Hormone-controlled cooperative binding of transcription factors drives synergistic induction of fasting-regulated genes

Goldberg, D. T., Charni‐Natan, M., Buchshtab, N., Bar‐Shimon, M., & Goldstein, I. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac358 · Cited by 21

Emerging Insights into the Role of BDNF on Health and Disease in Periphery

Ichimura‐Shimizu, M., Kurrey, K., Miyata, M., Dezawa, T., Tsuneyama, K., & Kojima, M. (2024) · Biomolecules · doi:10.3390/biom14040444 · Cited by 20

Review and Evaluate the Bioinformatics Analysis Strategies of ATAC-seq and CUT&Tag Data

Cheng, S., Miao, B., Li, T., Zhao, G., & Zhang, B. (2024) · Genomics Proteomics & Bioinformatics · doi:10.1093/gpbjnl/qzae054 · Cited by 20

The search for cis-regulatory driver mutations in cancer genomes

Poulos, R. C., Sloane, M. A., Hesson, L. B., & Wong, J. W. H. (2015) · Oncotarget · doi:10.18632/oncotarget.5085 · Cited by 21

‘Omic’ technologies as a helpful tool in radioecological research

Volkova, P., & Geras'kin, S. A. (2018) · Journal of Environmental Radioactivity · doi:10.1016/j.jenvrad.2018.04.011 · Cited by 20

Exact distributions for stochastic gene expression models with arbitrary promoter architecture and translational bursting

Chen, M., Luo, S., Cao, M., Guo, C., Zhou, T., & Zhang, J. (2022) · Physical review. E · doi:10.1103/physreve.105.014405 · Cited by 19

Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1

Ye, Z., Chen, Z., Sunkel, B. D., Frietze, S. E., Huang, T. H. ‐., Wang, Q., & Jin, V. X. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw659 · Cited by 19

Queuing Models of Gene Expression: Analytical Distributions and Beyond

Shi, C., Jiang, Y., & Zhou, T. (2020) · Biophysical Journal · doi:10.1016/j.bpj.2020.09.001 · Cited by 20

Exploring Additional Valuable Information From Single-Cell RNA-Seq Data

Li, Y., Xu, Q., Wu, D., & Chen, G. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.593007 · Cited by 20

Data for "Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states"

Wagh, K., Stavreva, D. A., Jensen, R. A., Paakinaho, V., Fettweis, G., Schiltz, R. L., Wüstner, D., Mandrup, S., Presman, D. M., Upadhyaya, A., et al. (2023) · UEF eRepo (University of Eastern Finland) · doi:10.5281/zenodo.7558777 · Cited by 19

Citrullination in health and disease: From physiological function to gene regulation

Zhang, X., Xie, G., Rao, L., & Tian, C. (2024) · Genes & Diseases · doi:10.1016/j.gendis.2024.101355 · Cited by 18

Chromatin Accessibility and Transcriptomic Alterations in Murine Ovarian Granulosa Cells upon Deoxynivalenol Exposure

Fan, H., Ren, Z., Xu, C., Wang, H., Wu, Z., Rehman, Z. U., Wu, S., Sun, M., & Bao, W. (2021) · Cells · doi:10.3390/cells10112818 · Cited by 18

Multifaceted Transcriptional Network of Estrogen-Related Receptor Alpha in Health and Disease

Cerutti, C., Shi, J., & Vanacker, J.-M. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24054265 · Cited by 20

Multi-omics profiling of retinal pigment epithelium reveals enhancer-driven activation of RANK-NFATc1 signaling in traumatic proliferative vitreoretinopathy

Liao, M., Zhu, X., Lu, Y., Yi, X., Hu, Y., Zhao, Y., Ye, Z., Guo, X., Liang, M., Jin, X., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-51624-y · Cited by 18

The roles of homologous recombination and the immune system in the genomic evolution of cancer

Nandi, B., Talluri, S., Kumar, S., Yenumula, C., Gold, J. S., PRABHALA, R. H., Munshi, N. C., & Shammas, M. A. (2018) · Journal of Translational Science · doi:10.15761/jts.1000282 · Cited by 18

Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome

Sun, H.-Y., Kim, N., Hwang, C., & Yoo, J.-Y. (2015) · PLoS ONE · doi:10.1371/journal.pone.0125599 · Cited by 18

Living in a noisy world—origins of gene expression noise and its impact on cellular decision‐making

Pal, S., & Dhar, R. (2024) · FEBS Letters · doi:10.1002/1873-3468.14898 · Cited by 18

Schlank orchestrates insect developmental transition by switching H3K27 acetylation to trimethylation in the prothoracic gland

Yuan, D., Zhang, X., Yang, Y., Wei, L., Li, H., Zhao, T., Guo, M., Li, Z., Huang, Z., Wang, M., et al. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2401861121 · Cited by 17

A Model for Aryl Hydrocarbon Receptor-Activated Gene Expression Shows Potency and Efficacy Changes and Predicts Squelching Due to Competition for Transcription Co-Activators

Simon, T. W., Budinsky, R. A., & Rowlands, J. C. (2015) · PLoS ONE · doi:10.1371/journal.pone.0127952 · Cited by 17

Feed-forward regulation adaptively evolves via dynamics rather than topology when there is intrinsic noise

Xiong, K., Lancaster, A. K., Siegal, M. L., & Masel, J. (2019) · Nature Communications · doi:10.1038/s41467-019-10388-6 · Cited by 17

Annotations capturing cell type-specific TF binding explain a large fraction of disease heritability

van de Geijn, B., Finucane, H. K., Gazal, S., Hormozdiari, F., Amariuta, T., Liu, X., Gusev, A., Loh, P., Reshef, Y., Kichaev, G., et al. (2019) · Human Molecular Genetics · doi:10.1093/hmg/ddz226 · Cited by 18

Genome‐wide off‐rates reveal how DNA binding dynamics shape transcription factor function

de Jonge, W. J., Brok, M. O., Lijnzaad, P., Kemmeren, P., & Holstege, F. C. P. (2020) · Molecular Systems Biology · doi:10.15252/msb.20209885 · Cited by 17

The Causes and Consequences of Spatial Organization of the Genome in Regulation of Gene Expression

Agelopoulos, M., Foutadakis, S., & Thanos, D. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.682397 · Cited by 19

“Hit‐and‐run”: Transcription factors get caught in the act

Charoensawan, V., Martinho, C., & Wigge, P. A. (2015) · BioEssays · doi:10.1002/bies.201400186 · Cited by 17

The Histone Variant MacroH2A Blocks Cellular Reprogramming by Inhibiting Mesenchymal-to-Epithelial Transition

Pliatska, M., Καπασά, Μ., Kokkalis, A., Polyzos, A., & Thanos, D. (2018) · Molecular and Cellular Biology · doi:10.1128/mcb.00669-17 · Cited by 17

Chromatin Structure and Function in Mosquitoes

Lezcano, Ó. M., Sánchez-Polo, M., Ruiz, J. L., & Gómez‐Díaz, E. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.602949 · Cited by 17

Small-Molecule Approaches to Target Transcription Factors

Cui, H., Stilgenbauer, M., & Koehler, A. N. (2024) · Annual Review of Cancer Biology · doi:10.1146/annurev-cancerbio-062722-012209 · Cited by 19

Naturally occurring novel promoters around pyruvate branch-point for recombinant protein production in Pichia pastoris (Komagataella phaffii): Pyruvate decarboxylase- and pyruvate kinase- promoters

Massahi, A., & Çalı́k, P. (2018) · Biochemical Engineering Journal · doi:10.1016/j.bej.2018.07.012 · Cited by 16

Logic and lineage impacts on functional transcription factor deployment for T-cell fate commitment

Rothenberg, E. V. (2021) · Biophysical Journal · doi:10.1016/j.bpj.2021.04.002 · Cited by 17

Epigenetics and Heart Development

George, R. M., & Firulli, A. B. (2021) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.637996 · Cited by 16

Functional analysis of the transcriptional activator XlnR of Penicillium oxalicum

Xia, C., Gao, L., Li, Z., Liu, G., & Song, X. (2021) · Journal of Applied Microbiology · doi:10.1111/jam.15276 · Cited by 15

Pioneer factors: Emerging rules of engagement for transcription factors on chromatinized DNA

Carminati, M., Vecchia, L., Stoos, L., & Thomä, N. H. (2024) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2024.102875 · Cited by 16

TriTag: an integrative tool to correlate chromatin dynamics and gene expression in living cells

Xu, H., Wang, J., Liang, Y., Fu, Y., Li, S., Huang, J., Xu, H., Zou, W., & Chen, B. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa906 · Cited by 15

Quantitative imaging of mammalian transcriptional dynamics: from single cells to whole embryos

Zhao, Z., White, M. D., Bissière, S., Levi, V., & Plachta, N. (2016) · BMC Biology · doi:10.1186/s12915-016-0331-9 · Cited by 15

Path from schizophrenia genomics to biology: gene regulation and perturbation in neurons derived from induced pluripotent stem cells and genome editing

Duan, J. (2015) · Neuroscience Bulletin · doi:10.1007/s12264-014-1488-2 · Cited by 14

Featuring the nucleosome surface as a therapeutic target

da Silva, I. T. G., de Oliveira, P. S. L., & Santos, G. M. (2015) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2015.02.010 · Cited by 14

NICD3 regulates the expression of MUC5AC and MUC2 by recruiting SMARCA4 and is involved in the differentiation of mucinous colorectal adenocarcinoma

Yan, X., Cheng, Y., Zhang, X., Hu, Y., Huang, H., Ren, J., Wen, B., Yang, Y., Xiao, K., Hu, W., et al. (2022) · Molecular Oncology · doi:10.1002/1878-0261.13296 · Cited by 14

Transcription Blockage Leads to New Beginnings

de Andrade-Lima, L. C., Veloso, A., & Ljungman, M. E. (2015) · Biomolecules · doi:10.3390/biom5031600 · Cited by 15

Elevated HMGN4 expression potentiates thyroid tumorigenesis

Kugler, J. E., Postnikov, Y. V., Furusawa, T., Kimura, S., & Bustin, M. (2017) · Carcinogenesis · doi:10.1093/carcin/bgx015 · Cited by 15

To Splice or to Transcribe: SKIP-Mediated Environmental Fitness and Development in Plants

Cao, Y., & Ma, L. (2019) · Frontiers in Plant Science · doi:10.3389/fpls.2019.01222 · Cited by 14

The Hsp90 Molecular Chaperone Regulates the Transcription Factor Network Controlling Chromatin Accessibility

Gvozdenov, Z., Bendix, L. D., Kolhe, J. A., & Freeman, B. (2019) · Journal of Molecular Biology · doi:10.1016/j.jmb.2019.09.007 · Cited by 14

Integration of transcription coregulator complexes with sequence-specific DNA-binding factor interactomes

Velthuijs, N., Meldal, B., Geessinck, Q., Porras, P., Medvedeva, Y. A., Zubritskiy, A. V., Orchard, S. E., & Logie, C. (2021) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2021.194749 · Cited by 14

Parp7 generates an ADP-ribosyl degron that controls negative feedback of androgen signaling

Wierbiłowicz, K., Yang, C., Almaghasilah, A., Wesołowski, P. A., Pracht, P., Dworak, N. M., Masur, J., Wijngaarden, S., Filippov, D. V., Wales, D. J., et al. (2025) · The EMBO Journal · doi:10.1038/s44318-025-00510-4 · Cited by 13

Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals

Horváth, A., Dániel, B., Széles, L., Cuaranta‐Monroy, I., Czimmerer, Z., Ozgyin, L., Steiner, L., Kiss, M., Simándi, Z., Póliska, S., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz118 · Cited by 13

CharPlant: A De Novo Open Chromatin Region Prediction Tool for Plant Genomes

Shen, Y., Chen, L., & Gao, J. (2021) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2020.06.021 · Cited by 13

Understanding breast cancer heterogeneity through non-genetic heterogeneity

Barough, N. B., Sajjadian, F., Jalilzadeh, N., Shafaei, H., & Velaei, K. (2021) · Breast Cancer · doi:10.1007/s12282-021-01237-w · Cited by 13

Low HER2 expression in normal breast epithelium enables dedifferentiation and malignant transformation via chromatin opening

Hayat, A., Carter, E. P., King, H. W., Ors, A., Doe, A. R., Álvarez–Teijeiro, S., Charrot, S., Godinho, S. A., Cutillas, P. R., Mohammed, H., et al. (2023) · Disease Models & Mechanisms · doi:10.1242/dmm.049894 · Cited by 13

Bioinformatics and HIV Latency

Ciuffi, A., Mohammadi, P., Golumbeanu, M., di Iulio, J., & Telenti, A. (2015) · Current HIV/AIDS Reports · doi:10.1007/s11904-014-0240-x · Cited by 13

Integrated omics approaches to characterize a nuclear receptor corepressor-associated histone deacetylase in mouse skeletal muscle

Gong, Y., Cao, R., Ding, G., Hong, S., Zhou, W., Lu, W., Damle, M., Fang, B., Wang, C., Qian, J., et al. (2017) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2017.05.024 · Cited by 14

Accumulation of Mitochondrial RPPH1 RNA Is Associated with Cellular Senescence

Lee, J. W., Chun, Y. L., Kim, A., Lloyd, L. T., Ko, S., Yoon, J., & Min, K. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22020782 · Cited by 14

Establishment of a high-throughput detection system for DNA demethylating agents

Okochi‐Takada, E., Hattori, N., Ito, A., Niwa, T., Wakabayashi, M., Kimura, K., Yoshida, M., & Ushijima, T. (2016) · Epigenetics · doi:10.1080/15592294.2016.1267887 · Cited by 13

Epigenetic aging in major depressive disorder: Clocks, mechanisms and therapeutic perspectives

Shaikh, M., & Doshi, G. (2024) · European Journal of Pharmacology · doi:10.1016/j.ejphar.2024.176757 · Cited by 13

Chromatin accessibility dynamics insight into crosstalk between regulatory landscapes in poplar responses to multiple treatments

Wang, W., Chen, K., Chen, N., Gao, J., Zhang, W., Gong, J., Tong, S., Chen, Y., Li, Y., Feng, Y., et al. (2023) · Tree Physiology · doi:10.1093/treephys/tpad023 · Cited by 12

By the company they keep: interaction networks define the binding ability of transcription factors

Cirillo, D., Botta‐Orfila, T., & Tartaglia, G. G. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv607 · Cited by 12

Spatiotemporal Control of Forkhead Binding to DNA Regulates the Meiotic Gene Expression Program

Alves‐Rodrigues, I., Ferreira, P. G., Moldón, A., Vivancos, A. P., Hidalgo, E., Guigó, R., & Ayté, J. (2016) · Cell Reports · doi:10.1016/j.celrep.2015.12.074 · Cited by 12

Chromatin enables precise and scalable gene regulation with factors of limited specificity

Perkins, M. L., Crocker, J., & Tkačik, G. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2411887121 · Cited by 11

Integrative analysis of DNA methylation and mRNA expression during differentiation of umbilical cord blood derived mononuclear cells to endothelial cells

Jeong, Y., Jun, Y., Kim, J., Park, H., Choi, K.-S., Zhang, H., Park, J. A., Kwon, J., Kim, Y., Lee, S., et al. (2017) · Gene · doi:10.1016/j.gene.2017.09.006 · Cited by 11

High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation

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The Emerging Role of TPR-Domain Immunophilins in the Mechanism of Action of Steroid Receptors

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