The DOI matches its Crossref record; 22 of the 22 references it cites were found in a registry or an index.
Constraint-based models predict metabolic and associated cellular functions
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Cites
Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection
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What is flux balance analysis?
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Self-citationCancer cell metabolism: warburg and beyond
Hsu, P. P., & Sabatini, D. M. (2008) · Cell · doi:10.1016/j.cell.2008.08.021 · Cited by 2,452 · cited 1×
“There has been renewed interest in studying metabolic alterations that occur in cancer cells 76 .”
BackgroundThe Genetic Landscape of a Cell
Costanzo, M., Baryshnikova, A., Bellay, J., Kim, Y., Spear, E. D., Sevier, C. S., Ding, H., Koh, J. L. Y., Toufighi, K., Mostafavi, S., et al. (2010) · Science · doi:10.1126/science.1180823 · Cited by 2,162
A protocol for generating a high-quality genome-scale metabolic reconstruction
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Self-citationA Whole-Cell Computational Model Predicts Phenotype from Genotype
Karr, J. R., Sanghvi, J. C., Macklin, D. N., Gutschow, M. V., Jacobs, J. M., Bolival, B., Assad-Garcia, N., Glass, J. I., & Covert, M. W. (2012) · Cell · doi:10.1016/j.cell.2012.05.044 · Cited by 1,300 · cited 1×
“Trends in current literature 89,91,96 indicate that other cellular processes may be modelled using alternative frameworks that are better suited for a particular biological phenomena.”
BackgroundA community-driven global reconstruction of human metabolism
Thiele, I., Swainston, N., Fleming, R. M. T., Hoppe, A., Sahoo, S., Aurich, M. K., Haraldsdottir, H., Mo, M. L., Rolfsson, O., Stobbe, M. D., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2488 · Cited by 1,019
Self-citationEscherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
Ibarra, R. U., Edwards, J. S., & Palsson, B. O. (2002) · Nature · doi:10.1038/nature01149 · Cited by 857 · cited 2×
“Studies have shown that, by optimizing the assumed cellular objectives of growth 27 and energy use 36,37 , one can predict metabolic fluxes in microorganisms.”
BackgroundSelf-citationThe Molecular Diversity of Adaptive Convergence
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Cited by
Gut microbiota functions: metabolism of nutrients and other food components
Rowland, I., Gibson, G., Heinken, A., Scott, K., Swann, J., Thiele, I., & Tuohy, K. (2018) · European Journal of Nutrition · doi:10.1007/s00394-017-1445-8 · Cited by 2,878
“, biomass production, metabolic fluxes through the network that satisfy this objective are predicted [146].”
BackgroundBiGG Models: A platform for integrating, standardizing and sharing genome-scale models
King, Z. A., Lu, J., Dräger, A., Miller, P., Federowicz, S., Lerman, J. A., Ebrahim, A., Palsson, B. O., & Lewis, N. E. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1049 · Cited by 938
Self-citationSystematic Review of Gut Microbiota and Major Depression
Cheung, S. G., Goldenthal, A. R., Uhlemann, A.-C., Mann, J. J., Miller, J. M., & Sublette, M. E. (2019) · Frontiers in Psychiatry · doi:10.3389/fpsyt.2019.00034 · Cited by 597
Metabolic modeling of single Th17 cells reveals regulators of autoimmunity
Wagner, A., Wang, C., Fessler, J., DeTomaso, D., Avila-Pacheco, J., Kaminski, J., Zaghouani, S., Christian, E., Thakore, P., Schellhaass, B., et al. (2021) · Cell · doi:10.1016/j.cell.2021.05.045 · Cited by 524
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Metadata
- Authors
- Bordbar, A., Monk, J. M., King, Z. A., & Palsson, B. O.
- Venue
- Nature Reviews Genetics
- Published
- 2014-01-16
- Volume
- 15
- Issue
- 2
- Pages
- 107-120
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2044935306
- Cited by
- 830
- References
- 22
- FWCI
- 5.68
- Type
- journal article
- Language
- en
- Open access
- closed
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- Bordbar, A., Monk, J. M., King, Z. A., & Palsson, B. O. (2014). Constraint-based models predict metabolic and associated cellular functions. Nature Reviews Genetics. https://doi.org/10.1038/nrg3643
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
