Mechanisms of transcription-coupled DNA repair

Cited by (378)

Items 101–200 of 378

1. Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
   Marie Touchon · 2004 · Nucleic Acids Research
2. Xeroderma pigmentosum genes: Functions inside and outside DNA repair
   Sugasawa, K. · 2007 · Carcinogenesis
3. GC-compositional strand bias around transcription start sites in plants and fungi
   Shigeo Fujimori, Takanori Washio, Masaru Tomita · 2005 · BMC Genomics
4. Irofulven Cytotoxicity Depends on Transcription-Coupled Nucleotide Excision Repair and Is Correlated with XPG Expression in Solid Tumor Cells
   Florence Koeppel, Virginie Poindessous, Vladimir Lazar, Éric Raymond, Alain R. Sarasin, Annette Kragh Larsen · 2004 · Clinical Cancer Research
5. DNA interstrand cross-link repair inSaccharomyces cerevisiae
   Peter Lehoczký, Peter J. McHugh, Miroslav Chovanec · 2006 · FEMS Microbiology Reviews
6. Global unleashing of transcription elongation waves in response to genotoxic stress restricts somatic mutation rate
   Matthieu D. Lavigne, Dimitris Konstantopoulos, Katerina Z. Ntakou‐Zamplara, Anastasios Liakos, Maria I. Fousteri · 2017 · Nature Communications
7. Blockage of RNA Polymerase II at a Cyclobutane Pyrimidine Dimer and 6-4 Photoproduct
   Mei Kwei, Joan Seah, Kuraoka, Isao, Horibata, Katsuyoshi, Ubukata, Manabu, Kobatake, Eiry, Iwai, Shigenori, Handa, Hiroshi, Tanaka, Kiyoji · 2004 · Biochemical and Biophysical Research Communications
8. Transcription destabilizes triplet repeats
   Yunfu Lin, Leroy Hubert, John H. Wilson · 2008 · Molecular Carcinogenesis
9. The Spacer Region of XPG Mediates Recruitment to Nucleotide Excision Repair Complexes and Determines Substrate Specificity
   Isabelle Dunand-Sauthier, Marcel Hohl, Fabrizio Thorel, Pascale Jaquier-Gubler, Stuart G. Clarkson, Orlando D. Schärer · 2004 · Journal of Biological Chemistry
10. Roles of Saccharomyces cerevisiae DNA polymerases Pol  and Pol  in response to irradiation by simulated sunlight
    Kozmin, S. G. · 2003 · Nucleic Acids Research
11. Structural Determinants for Substrate Binding and Catalysis by the Structure-specific Endonuclease XPG
    Marcel Hohl, Fabrizio Thorel, Stuart G. Clarkson, Orlando D. Schärer · 2003 · Journal of Biological Chemistry
12. Transcription-associated recombination in eukaryotes: link between transcription, replication and recombination
    Ponnari Gottipati, Thomas Helleday · 2009 · Mutagenesis
13. Transcription-coupled repair: A complex affair
    Isabel Mellon · 2005 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
14. Fate of RNA Polymerase II Stalled at a Cisplatin Lesion
    Alexandre Tremeau‐Bravard, Thilo Riedl, Jean‐Marc Egly, Michael E. Dahmus · 2004 · Journal of Biological Chemistry
15. The interface between transcription and mechanisms maintaining genome integrity
    Jesper Qualmann Svejstrup · 2010 · Trends in Biochemical Sciences
16. Damage control: DNA repair, transcription, and the ubiquitin–proteasome system
    Anne Daulny, William P. Tansey · 2009 · DNA repair
17. Nucleotide excision repair and neurological diseases
    Thierry P. Nouspikel · 2008 · DNA repair
18. The Role of Elongin BC-Containing Ubiquitin Ligases
    Fumihiko Okumura, Mariko Matsuzaki, Kunio Nakatsukasa, Takumi Kamura · 2012 · Frontiers in Oncology
19. Transcription‐coupled TA and GC strand asymmetries in the human genome
    Marie Touchon, Samuel Nicolay, A. Arnéodo, Yves d’Aubenton-Carafa, Claude Thermes · 2003 · FEBS Letters
20. Xpa deficiency reduces CAG trinucleotide repeat instability in neuronal tissues in a mouse model of SCA1
    Leroy Hubert, Yunfu Lin, Vincent Dion, John H. Wilson · 2011 · Human Molecular Genetics
21. Repairing DNA damage in chromatin
    Alisson M. Gontijo, Catherine Green, Geneviève Almouzni · 2003 · Biochimie
22. RNA Polymerase II Blockage by Cisplatin-damaged DNA
    Yongwon Jung, Stephen J. Lippard · 2005 · Journal of Biological Chemistry
23. Replication-Associated Mutational Asymmetry in the Human Genome
    Chun-Long Chen, Lauranne Duquenne, Benjamin Audit, Guillaume Guilbaud, Aurélien Rappailles, Antoine Baker, Maxime Huvet, Yves d’Aubenton-Carafa, Olivier Hyrien, A. Arnéodo et al. · 2011 · Molecular Biology and Evolution
24. Regulation of HuR by DNA Damage Response Kinases
    Hyeon Ho Kim, Kotb Abdelmohsen, Myriam Gorospe · 2010 · Journal of Nucleic Acids
25. Molecular Mechanisms of Transcription-Coupled Repair
    Christopher P. Selby, Laura A. Lindsey‐Boltz, Wentao Li, Aziz Sancar · 2023 · Annual Review of Biochemistry
26. New insights for understanding the transcription-coupled repair pathway
    Sarasin, Alain, Stary, Anne · 2007 · DNA Repair
27. Transcription-Induced Mutational Strand Bias and Its Effect on Substitution Rates in Human Genes
    Carina F. Mugal, H. H. von Grünberg, Martin Peifer · 2008 · Molecular Biology and Evolution
28. A DNA translocation motif in the bacterial transcription-repair coupling factor, Mfd
    Anna L. Chambers · 2003 · Nucleic Acids Research
29. XPG: Its Products and Biological Roles
    Orlando D. Schärer · 2008 · Advances in experimental medicine and biology
30. Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo
    Shivani Malik, Priyasri Chaurasia, Shweta Lahudkar, Geetha Durairaj, Abhijit Shukla, Sukesh R. Bhaumik · 2009 · Nucleic Acids Research
31. DDB2 Complex-Mediated Ubiquitylation around DNA Damage Is Oppositely Regulated by XPC and Ku and Contributes to the Recruitment of XPA
    Arato Takedachi, Masafumi Saijo, Kiyoji Tanaka · 2010 · Molecular and Cellular Biology
32. Ubiquitin and control of transcription
    Sarath C. Dhananjayan, Ayesha Ismail, Zafar Nawaz · 2005 · Essays in Biochemistry
33. Regulation and Rate Enhancement during Transcription-Coupled DNA Repair
    Laura Manelytė, Young-In T. Kim, Abigail J. Smith, Rachel M. Smith, Nigel J. Savery · 2010 · Molecular Cell
34. Inhibition of Nucleotide Excision Repair by High Mobility Group Protein HMGA1
    Jennifer E. Adair, Youngho Kwon, Gregory Allan Dement, Michael J. Smerdon, Raymond Reeves · 2005 · Journal of Biological Chemistry
35. UV wavelength-dependent regulation of transcription-coupled nucleotide excision repair in p53-deficient human cells
    Géraldine Mathonnet, Caroline Léger, Julie Desnoyers, Régen Drouin, Jean‐Philippe Therrien, Elliot A. Drobetsky · 2003 · Proceedings of the National Academy of Sciences
36. Stationary Phase Mutagenesis inB. subtilis: A Paradigm to Study Genetic Diversity Programs in Cells Under Stress
    Eduardo A. Robleto, Ronald E. Yasbin, Christian A Ross, Mario Pedraza‐Reyes · 2007 · Critical Reviews in Biochemistry and Molecular Biology
37. The role of Cockayne syndrome group A (CSA) protein in transcription-coupled nucleotide excision repair
    Masafumi Saijo · 2013 · Mechanisms of Ageing and Development
38. Deregulation of DNA Damage Signal Transduction by Herpesvirus Latency-Associated M2
    Xiaozhen Liang, Mary Pickering, Nam‐Hyuk Cho, Heesoon Chang, Michael R. Volkert, Timothy F. Kowalik, Jae Ung Jung · 2006 · Journal of Virology
39. The Variation of Base Composition in Plant Genomes
    Petr Šmarda, Petr Bureš · 2012 · Springer eBooks
40. Tandem duplications lead to novel expression patterns through exon shuffling in Drosophila yakuba
    Rebekah L. Rogers, Ling Shao, Kevin Thornton · 2017 · PLoS Genetics
41. Fixation biases affecting human SNPs
    Matthew T. Webster, Nick G.C. Smith · 2004 · Trends in Genetics
42. Ape1 Abasic Endonuclease Activity is Regulated by Magnesium and Potassium Concentrations and is Robust on Alternative DNA Structures
    David M. Wilson · 2004 · Journal of Molecular Biology
43. Molecular and Cellular Dissection of Mating-Type Switching Steps in Schizosaccharomyces pombe
    Allyson M. Holmes, Atanas Kaykov, Benoı̂t Arcangioli · 2004 · Molecular and Cellular Biology
44. The conserved factor DE‐ETIOLATED 1 cooperates with CUL4–DDB1DDB2 to maintain genome integrity upon UV stress
    Enric Castells, Jean Molinier, Giovanna Benvenuto, Clara Bourbousse, Gérald Zabulon, Antoine Zalc, Stefano Cazzaniga, Pascal Genschik, Fredy Barnèche, Chris Bowler · 2011 · The EMBO Journal
45. The 3' processing factor CstF functions in the DNA repair response
    Nurit Mirkin, D. Fonseca, S. Mohammed, Murat Alper Cevher, James L. Manley, Frida E. Kleiman · 2008 · Nucleic Acids Research
46. Deficiency of the Cockayne syndrome B (CSB) gene aggravates the genomic instability caused by endogenous oxidative DNA base damage in mice
    Christin Trapp, Karen Reite, Arne Klungland, Bernd Epe · 2007 · Oncogene
47. Mediator links transcription and DNA repair by facilitating Rad2/XPG recruitment
    Fanny Eyboulet, Camille Cibot, Thomas Eychenne, Helen Neil, Olivier Alibert, Michel Werner, Julie Soutourina · 2013 · Genes & Development
48. H3K4me2 regulates the recovery of protein biosynthesis and homeostasis following DNA damage
    Wang, Siyao, Meyer, David H., Schumacher, Björn · 2020 · Nature Structural & Molecular Biology
49. A Novel Hydrogen Peroxide-induced Phosphorylation and Ubiquitination Pathway Leading to RNA Polymerase II Proteolysis
    Naoto Inukai, Yuki Yamaguchi, Isao Kuraoka, Tomoko Yamada, Sachiko Kamijo, Junko Kato, Kiyoji Tanaka, Hiroshi Handa · 2004 · Journal of Biological Chemistry
50. Mouse ZAR1‐like (XM_359149) colocalizes with mRNA processing components and its dominant‐negative mutant caused two‐cell‐stage embryonic arrest
    Jianjun Hu, Fengchao Wang, Xiaoquan Zhu, Ye Yuan, Mingxiao Ding, Shaorong Gao · 2009 · Developmental Dynamics
51. Arabidopsis Cockayne Syndrome A-Like Proteins 1A and 1B Form a Complex with CULLIN4 and Damage DNA Binding Protein 1A and Regulate the Response to UV Irradiation
    Caiguo Zhang, Huiping Guo, Jun Zhang, Guang‐Qin Guo, Karen S. Schumaker, Yan Guo · 2010 · The Plant Cell
52. GC content variability of eubacteria is governed by the pol III α subunit
    Xiaoqian Zhao, Zhang Zhang, Jiangwei Yan, Jun Myoung Yu · 2007 · Biochemical and Biophysical Research Communications
53. DNA Damage-induced Def1-RNA Polymerase II Interaction and Def1 Requirement for Polymerase Ubiquitylation in Vitro
    James Reid, Jesper Qualmann Svejstrup · 2004 · Journal of Biological Chemistry
54. Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile
    Martin J. Lercher, JV Chamary, Laurence D. Hurst · 2004 · Genome Research
55. The molecular basis for different disease states caused by mutations in TFIIH and XPG
    Orlando D. Schärer · 2008 · DNA repair
56. Relevance of the Fanconi anemia pathway in the response of human cells to trabectedin
    José Antonio Casado, Paula Rı́o, Esther Marco, Verónica García-Hernández, Alberto Domingo, Laura M. Pérez, Juan Carlos Tercero, Juan J. Vaquero, Beatriz Albella, Federico Gago et al. · 2008 · Molecular Cancer Therapeutics
57. Chromatin elongation factors
    Jesper Qualmann Svejstrup · 2002 · Current Opinion in Genetics & Development
58. Nucleotide excision repair and the ubiquitin proteasome pathway—Do all roads lead to Rome?
    Simon Huw Reed, Thomas G. Gillette · 2006 · DNA repair
59. Transcription and DNA adducts: what happens when the message gets cut off?
    David A. Scicchitano, Eugenia C. Olesnicky, Alexandra Dimitri · 2004 · DNA repair
60. Expression of hepatitis B virus X oncoprotein inhibits transcription-coupled nucleotide excision repair in human cells
    Géraldine Mathonnet, Silvana Lachance, Moulay A. Alaoui‐Jamali, Elliot A. Drobetsky · 2004 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
61. Developmental Regulation of dUTPase in Drosophila melanogaster
    Angéla Békési, Imre Zagyva, Éva Hunyadi‐Gulyás, Veronika Pongrácz, J. Kovári, Ágnes O. Nagy, Anna Erdei, Katalin F. Medzihradszky, Beáta G. Vértessy · 2004 · Journal of Biological Chemistry
62. Altering the chromatin landscape for nucleotide excision repair
    Ronita Nag Chaudhuri, Michael J. Smerdon · 2009 · Mutation Research/Reviews in Mutation Research
63. Conformational changes of a Swi2/Snf2 ATPase during its mechano-chemical cycle
    Robert Lewis, Harald Dürr, Karl‐Peter Hopfner, Jens Michaelis · 2008 · Nucleic Acids Research
64. UVB Induces a Genome-Wide Acting Negative Regulatory Mechanism That Operates at the Level of Transcription Initiation in Human Cells
    Ákos Gyenis, David Umlauf, Zsuzsanna Újfaludi, Imre Boros, Tao Ye, Làszlò Tora · 2014 · PLoS Genetics
65. The Yeast Capping Enzyme Represses RNA Polymerase II Transcription
    Lawrence C. Myers, Lynne Lacomis, Hediye Erdjument‐Bromage, Paul Tempst · 2002 · Molecular Cell
66. Disruption of mouse XAB2 gene involved in pre-mRNA splicing, transcription and transcription-coupled DNA repair results in preimplantation lethality
    Rie Yonemasu, Mitsuyoshi Minami, Yoshimichi Nakatsu, Masayo TAKEUCHI, Isao Kuraoka, Yoichi Matsuda, Yujiro Higashi, Hisato Kondoh, Kiyoji Tanaka · 2005 · DNA repair
67. Structure–function studies of the RNA polymerase II elongation complex
    Florian Brueckner, Karim‐Jean Armache, Alan C. M. Cheung, G.E. Damsma, Hubert Kettenberger, Elisabeth Lehmann, J.F. Sydow, Patrick Cramer · 2009 · Acta Crystallographica Section D Biological Crystallography
68. Multiple DNA damage recognition factors involved in mammalian nucleotide excision repair
    Kaoru Sugasawa · 2011 · Biochemistry (Moscow)
69. Influence of irofulven, a transcription-coupled repair-specific antitumor agent, on RNA polymerase activity, stability and dynamics in living mammalian cells
    Alexandre E. Escargueil, Virginie Poindessous, Daniele Grazziotin Soares, Alain R. Sarasin, Peter R. Cook, Annette Kragh Larsen · 2008 · Journal of Cell Science
70. Cellular Concentrations of DDB2 Regulate Dynamic Binding of DDB1 at UV-Induced DNA Damage
    Alekseev, Sergey, Luijsterburg, Martijn S., Pines, Alex, Geverts, Bart, Mari, Pierre-Olivier, Giglia-Mari, Giuseppina, Lans, Hannes, Houtsmuller, Adriaan B., Mullenders, Leon H. F., Hoeijmakers, Jan H. J. et al. · 2008 · Molecular and Cellular Biology
71. Posttranscriptional regulation of gene expression—adding another layer of complexity to the DNA damage response
    Jorge Bouças, Arina Riabinska, Mladen Jokić, Grit Sophie Herter-Sprie, Shuhua Chen, Katja Höpker, Hans Christian Reinhardt · 2012 · Frontiers in Genetics
72. ERα-associated protein networks
    Jennifer R. Schultz-Norton, Yvonne Ziegler, Ann M. Nardulli · 2011 · Trends in Endocrinology and Metabolism
73. Clusters of transcription-coupled repair in the human genome
    Jordi Surrallés, Marı́a José Ramı́rez, Ricard Marcos, A.T. Natarajan, Leon H.F. Mullenders · 2002 · Proceedings of the National Academy of Sciences
74. Analysis of U1 Small Nuclear RNA Interaction with Cyclin H
    William O'Gorman, Benjamin Thomas, Kon Yew Kwek, André Furger, Alexandre V. Akoulitchev · 2005 · Journal of Biological Chemistry
75. UV-induced proteolysis of RNA polymerase II is mediated by VCP/p97 segregase and timely orchestration by Cockayne syndrome B protein
    Jinshan He, Qianzheng Zhu, Gulzar Wani, Altaf A. Wani · 2016 · Oncotarget
76. Equal rates of repair of DNA photoproducts in transcribed and non‐transcribed strands in Sulfolobus solfataricus
    Robert Dorazi, Dorothee Götz, Stacey Munro, Rolf Bernander, Malcolm F. White · 2006 · Molecular Microbiology
77. Silent but Not Static: Accelerated Base-Pair Substitution in Silenced Chromatin of Budding Yeasts
    Lenny Teytelman, Michael B. Eisen, Jasper Rine · 2008 · PLoS Genetics
78. Compositional dynamics of guanine and cytosine content in prokaryotic genomes
    Jianfei Hu, Xiaoqian Zhao, Zhang Zhang, Jun Myoung Yu · 2007 · Research in Microbiology
79. Chemie und Biologie der DNA‐Reparatur
    Orlando D. Schärer · 2003 · Angewandte Chemie
80. A new connection of mRNP biogenesis and export with transcription-coupled repair
    Hélène Gaillard, Ralf Erik Wellinger, Andrés Aguilera · 2007 · Nucleic Acids Research
81. Chlamydomonas reinhardtii: a convenient model system for the study of DNA repair in photoautotrophic eukaryotes
    Daniel Vlček, Andrea Ševčovičová, Barbara Sviežená, Eliška Gálová, Eva Miadoková · 2007 · Current Genetics
82. Gene Expression, Synteny, and Local Similarity in Human Noncoding Mutation Rates
    Matthew T. Webster · 2004 · Molecular Biology and Evolution
83. The Deoxyribonucleic Acid Repair Protein Flap Endonuclease-1 Modulates Estrogen-Responsive Gene Expression
    Jennifer R. Schultz-Norton, Kjirsten A. Walt, Yvonne Ziegler, Ian X. McLeod, John R. Yates, Lori Therese Raetzman, Ann M. Nardulli · 2007 · Molecular Endocrinology
84. Analysis of RNA polymerase II ubiquitylation and proteasomal degradation
    Ana Tufegdžić Vidaković, Michelle T. Harreman, A. Barbara Dirac-Svejstrup, Stefan Boeing, Roy Anindya, Vesela Encheva, Michelle Neumann, Marcus D. Wilson, Ambrosius P. Snijders, Jesper Qualmann Svejstrup · 2019 · Methods
85. Structural Basis for Transcription-coupled Repair: the N Terminus of Mfd Resembles UvrB with Degenerate ATPase Motifs
    Nora Aßenmacher, Katja Wenig, Alfred Lammens, Karl‐Peter Hopfner · 2005 · Journal of Molecular Biology
86. Dissociation of CAK from Core TFIIH Reveals a Functional Link between XP-G/CS and the TFIIH Disassembly State
    Hany H. Arab, Gulzar Wani, Alo Ray, Zubair I. Shah, Qianzheng Zhu, Altaf A. Wani · 2010 · PLoS ONE
87. Transcription Repair Coupling Factor
    Jesper Qualmann Svejstrup · 2002 · Molecular Cell
88. Cervical cancer: a tale from HPV infection to PARP inhibitors
    Minakshi Mann, Vikram Pratap Singh, Lalit Kumar · 2022 · Genes & Diseases
89. Nucleotide excision repair in chromatin: Damage removal at the drop of a HAT
    Simon Huw Reed · 2011 · DNA repair
90. Valosin-containing Protein (VCP)/p97 Segregase Mediates Proteolytic Processing of Cockayne Syndrome Group B (CSB) in Damaged Chromatin
    Jinshan He, Qianzheng Zhu, Gulzar Wani, Nidhi Sharma, Altaf A. Wani · 2016 · Journal of Biological Chemistry
91. Replication-associated purine asymmetry may contribute to strand-biased gene distribution
    Jianfei Hu, Xiaoqian Zhao, Jun Myoung Yu · 2007 · Genomics
92. The NER protein Rad33 shows functional homology to human Centrin2 and is involved in modification of Rad4
    Ben den Dulk, Patrick van Eijk, M. de Ruijter, Jourica A. Brandsma, Jaap Brouwer · 2008 · DNA repair
93. Distinct patterns of simple sequence repeats and GC distribution in intragenic and intergenic regions of primate genomes
    Wenhua Qi, Chaochao Yan, Wujiao Li, Xuemei Jiang, Guang-Zhou Li, Xiuyue Zhang, Tingzhang Hu, Jing Li, Bisong Yue · 2016 · Aging
94. Transcription past DNA adducts derived from polycyclic aromatic hydrocarbons
    David A. Scicchitano · 2005 · Mutation research. Fundamental and molecular mechanisms of mutagenesis
95. Nucleotide Excision Repair: Finely Tuned Molecular Orchestra of Early Pre‐incision Events
    Qianzheng Zhu, Altaf A. Wani · 2016 · Photochemistry and Photobiology
96. RECQL5 helicase: Connections to DNA recombination and RNA polymerase II transcription
    Ozan Aygün, Jesper Qualmann Svejstrup · 2010 · DNA repair
97. Shaping chromatin for repair
    Anastas G. Gospodinov, Zdenko Herceg · 2012 · Mutation Research/Reviews in Mutation Research
98. Transcription-coupled repair of 8-oxoguanine in human cells and its deficiency in some DNA repair diseases
    Manuela Pastoriza‐Gallego · 2003 · Biochimie
99. Transcription inhibition: A potential strategy for cancer therapeutics
    Frederick A. Derheimer, Ching‐Wei Chang, Mats E. Ljungman · 2005 · European Journal of Cancer
100. DNA photodamage recognition by RNA polymerase II
     Florian Brueckner, Patrick Cramer · 2007 · FEBS Letters