Mechanisms of transcription-coupled DNA repair

DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall

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Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

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Xeroderma Pigmentosum Group C Protein Complex Is the Initiator of Global Genome Nucleotide Excision Repair

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DNA Repair Helicase: a Component of BTF2 (TFIIH) Basic Transcription Factor

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Sequential Assembly of the Nucleotide Excision Repair Factors In Vivo

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DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs

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ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes

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Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

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Nucleotide excision repair and human syndromes

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Molecular Mechanism of Transcription-Repair Coupling

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DNA end-joining: from yeast to man

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The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.

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The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH

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Reversible Phosphorylation of the C-terminal Domain of RNA Polymerase II

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XPG endonuclease makes the 3′ incision in human DNA nucleotide excision repair

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Elongator, a Multisubunit Component of a Novel RNA Polymerase II Holoenzyme for Transcriptional Elongation

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Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

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Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiaePreprint

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Preferential DNA repair of an active gene in human cells.

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Nucleotide Excision Repair in Mammalian Cells

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Promoter targeting and chromatin remodeling by the SWI/SNF complex

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Failure of RNA synthesis to recover after UV irradiation; An early defect in cells from individuals with Cockayne syndrome and xeroderma pigmentosum

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The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor.

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ATP-Dependent Chromatin Remodeling by the Cockayne Syndrome B DNA Repair-Transcription-Coupling Factor

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The xeroderma pigmentosum group D (XPD) gene: one gene, two functions, three diseasesPreprint

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Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template.

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Xeroderma Pigmentosum p48 Gene Enhances Global Genomic Repair and Suppresses UV-Induced Mutagenesis

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UV-induced ubiquitination of RNA polymerase II: a novel modification deficient in Cockayne syndrome cells.

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Recycling of the general transcription factors during RNA polymerase II transcription.Preprint

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Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair

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Base excision repair in yeast and mammals

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Cockayne syndrome group B protein enhances elongation by RNA polymerase II

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The Oxidative DNA Lesion 8,5′-(S)-Cyclo-2′-deoxyadenosine Is Repaired by the Nucleotide Excision Repair Pathway and Blocks Gene Expression in Mammalian Cells

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Base Excision Repair of Oxidative DNA Damage Activated by XPG Protein

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Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells

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Different forms of TFIIH for transcription and DNA repair: Holo-TFIIH and a nucleotide excision repairosome

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Human Transcription-Repair Coupling Factor CSB/ERCC6 Is a DNA-stimulated ATPase but Is Not a Helicase and Does Not Disrupt the Ternary Transcription Complex of Stalled RNA Polymerase II

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DNA excision repair pathways

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The Cockayne syndrome B protein, involved in transcription‐coupled DNA repair, resides in an RNA polymerase II‐containing complex

van Gool, A. J., Citterio, E., Rademakers, S., Os, R. I. V. R.-V., Vermeulen, W., Constantinou, A., Egly, J., Bootsma, D., & Hoeijmakers, J. H. J. (1997) · The EMBO Journal · doi:10.1093/emboj/16.19.5955 · Cited by 257 · see citing works

RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6.

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Effect of DNA lesions on transcription elongation

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Ultraviolet Radiation-induced Ubiquitination and Proteasomal Degradation of the Large Subunit of RNA Polymerase II

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The multiple roles of transcription/repair factor TFIIH

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The residual repair capacity of xeroderma pigmentosum complementation group C fibroblasts is highly specific for transcriptionally active DNA

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The large subunit of RNA polymerase II is a substrate of the Rsp5 ubiquitin-protein ligase

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Stable binding of human XPC complex to irradiated DNA confers strong discrimination for damaged sites 1 1Edited by M. Yaniv

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UV-induced inhibition of transcription involves repression of transcription initiation and phosphorylation of RNA polymerase II

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3 Xeroderma pigmentosum and related disorders: Defects in DNA repair and transcription

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The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae.

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Recruitment of the Putative Transcription-Repair Coupling Factor CSB/ERCC6 to RNA Polymerase II Elongation Complexes

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RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair

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Response to adversity: molecular control of gene activation following genotoxic stress.

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Strong Functional Interactions of TFIIH with XPC and XPG in Human DNA Nucleotide Excision Repair, without a Preassembled Repairosome

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Reduced RNA polymerase II transcription in intact and permeabilized Cockayne syndrome group B cells

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Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription.

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Cisplatin‐ and UV‐damaged DNA lure the basal transcription factor TFIID/TBP

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Rsp5 Ubiquitin-Protein Ligase Mediates DNA Damage-Induced Degradation of the Large Subunit of RNA Polymerase II in Saccharomyces cerevisiae

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Transcription factor b (TFIIH) is required during nucleotide-excision repair in yeast

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Mechanism of transcription initiation and promoter escape by RNA polymerase II

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Genomic heterogeneity of nucleotide excision repair

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Nucleosome structure and positioning modulate nucleotide excision repair in the non‐transcribed strand of an active gene

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Controlling the efficiency of excision repair

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Error-Prone DNA Polymerases

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DNA repair domains within a human gene: selective repair of sequences near the transcription initiation site.

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Model for XPC-independent Transcription-coupled Repair of Pyrimidine Dimers in Humans

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Cockayne's Syndrome Fibroblasts Have Increased Sensitivity to Ultraviolet Light But Normal Rates of Unscheduled DNA Synthesis

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Inhibition of transcription and strand-specific DNA repair by α-amanitin in Chinese hamster ovary cells

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The bases for Cockayne syndrome

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DNA Adducts of cis-Diamminedichloroplatinum(II) and Its Trans Isomer Inhibit RNA Polymerase II Differentially in Vivo

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RNA Polymerase II Elongation Complexes Containing the Cockayne Syndrome Group B Protein Interact with a Molecular Complex Containing the Transcription Factor IIH Components Xeroderma Pigmentosum B and p62

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Nucleotide Excision Repair in Yeast Is Mediated by Sequential Assembly of Repair Factors and Not by a Pre-assembled Repairosome

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Double Mutants of <i>Saccharomyces cerevisiae</i> with Alterations in Global Genome and Transcription-Coupled Repair

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The Sensitivity of Cockayne’s Syndrome Cells to DNA-Damaging Agents Is Not due to Defective Transcription-Coupled Repair of Active Genes

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Activation of p53 or Loss of the Cockayne Syndrome Group B Repair Protein Causes Metaphase Fragility of Human U1, U2, and 5S Genes

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Transcription by eukaryotic and prokaryotic RNA polymerases of DNA modified at a d(GG) or a d(AG) site by the antitumor drug cis-diamminedichloroplatinum(II)

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Spt4 modulates Rad26 requirement in transcription‐coupled nucleotide excision repair

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Reduced RNA polymerase II transcription in extracts of Cockayne syndrome and xeroderma pigmentosum/Cockayne syndrome cells

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Ultraviolet radiation alters the phosphorylation of RNA polymerase II large subunit and accelerates its proteasome-dependent degradation

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Spectrum of DNA-platinum adduct recognition by prokaryotic and eukaryotic DNA-dependent RNA polymerases

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RNA Polymerase II Transcription Suppresses Nucleosomal Modulation of UV-Induced (6-4) Photoproduct and Cyclobutane Pyrimidine Dimer Repair in Yeast

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Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae

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UV light-induced degradation of RNA polymerase II is dependent on the Cockayne’s syndrome A and B proteins but not p53 or MLH1

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Molecular cloning and characterization of Saccharomyces cerevisiae RAD28, the yeast homolog of the human Cockayne syndrome A (CSA) gene

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Transcription factor IIH: A key player in the cellular response to DNA damage

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Sequence-specific and Domain-specific DNA Repair in Xeroderma Pigmentosum and Cockayne Syndrome Cells

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A conserved 5‘ to 3‘ exonuclease activity in the yeast and human nucleotide excision repair proteins RAD2 and XPG.

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Human Transcription Release Factor 2 Dissociates RNA Polymerases I and II Stalled at a Cyclobutane Thymine Dimer

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Repair of rDNA in Saccharomyces cerevisiae: RAD4-independent strand- specific nucleotide excision repair of RNA polymerase I transcribed genes

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Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Mugal, C. F., & Ellegren, H. (2011) · Genome biology · doi:10.1186/gb-2011-12-6-r58 · Cited by 93 · see citing works

Transcription arrest at DNA damage sites

Tornaletti, S. (2005) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/j.mrfmmm.2005.03.014 · Cited by 93 · see citing works

Genome-Wide Analysis of Factors Affecting Transcription Elongation and DNA Repair: A New Role for PAF and Ccr4-Not in Transcription-Coupled Repair

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Behavior of T7 RNA Polymerase and Mammalian RNA Polymerase II at Site-specific Cisplatin Adducts in the Template DNA

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The Single-Strand DNA Binding Activity of Human PC4 Prevents Mutagenesis and Killing by Oxidative DNA Damage

Wang, J., Sarker, A. H., Cooper, P. K., & Volkert, M. R. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.13.6084-6093.2004 · Cited by 90 · see citing works

Non‐random mutation: The evolution of targeted hypermutation and hypomutation

Martincorena, I., & Luscombe, N. M. (2012) · BioEssays · doi:10.1002/bies.201200150 · Cited by 90 · see citing works

The Chromatin and Transcriptional Landscape of NativeSaccharomyces cerevisiaeTelomeres and Subtelomeric Domains

Ellahi, A., Thurtle-Schmidt, D. M., & Rine, J. (2015) · Genetics · doi:10.1534/genetics.115.175711 · Cited by 89 · see citing works

Dynamic relocalization of hOGG1 during the cell cycle is disrupted in cells harbouring the hOGG1-Cys326 polymorphic variant

Luna, L. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki325 · Cited by 89 · see citing works

DNA Quality Control by a Lesion Sensor Pocket of the Xeroderma Pigmentosum Group D Helicase Subunit of TFIIH

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CSB-PGBD3 Mutations Cause Premature Ovarian Failure

Qin, Y., Guo, T., Li, G., Tang, T.-S., Zhao, S., Jiao, X., Gong, J., Gao, F., Guo, C., Simpson, J. L., et al. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005419 · Cited by 88 · see citing works

Patterns and Evolution of Nucleotide Landscapes in Seed Plants

Serres-Giardi, L., Belkhir, K., David, J., & Glémin, S. (2012) · The Plant Cell · doi:10.1105/tpc.111.093674 · Cited by 88 · see citing works

RNA polymerase II bypasses 8-oxoguanine in the presence of transcription elongation factor TFIIS

Kuraoka, I., Suzuki, K., Ito, S., Hayashida, M., Kwei, J. S. M., Ikegami, T., Handa, H., Nakabeppu, Y., & Tanaka, K. (2007) · DNA repair · doi:10.1016/j.dnarep.2007.01.014 · Cited by 88 · see citing works

The molecular mechanism of transcription-coupled DNA repair

Savery, N. J. (2007) · Trends in Microbiology · doi:10.1016/j.tim.2007.05.005 · Cited by 88 · see citing works

CPDs and 6-4PPs play different roles in UV-induced cell death in normal and NER-deficient human cells

Lima-Bessa, K. M. D., Armelini, M. G., Chiganças, V., Jacysyn, J. F., Amarante-Mendes, G. P., Sarasin, A., & Menck, C. F. M. (2008) · DNA Repair · doi:10.1016/j.dnarep.2007.11.003 · Cited by 87 · see citing works

Global mRNA Stabilization Preferentially Linked to Translational Repression during the Endoplasmic Reticulum Stress Response

Kawai, T., Fan, J., Mazan-Mamczarz, K., & Gorospe, M. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.15.6773-6787.2004 · Cited by 87 · see citing works

Mechanistic insights into transcription coupled DNA repair

Pani, B., & Nudler, E. (2017) · DNA repair · doi:10.1016/j.dnarep.2017.06.006 · Cited by 60 · see citing works

Unravelling molecular mechanisms in transcription-coupled nucleotide excision repair

van der Weegen, Y. (2022) · Leiden Repository (Leiden University)

Transcription-coupled repair: An update

Spivak, G. (2016) · Archives of Toxicology · doi:10.1007/s00204-016-1820-x · Cited by 65 · see citing works

Effect of DNA lesions on transcription elongation

Tornaletti, S., & Hanawalt, P. C. (1999) · Biochimie · doi:10.1016/s0300-9084(99)80046-7 · Cited by 235 · see citing works

The complex choreography of transcription-coupled repair

Spivak, G., & Ganesan, A. K. (2014) · DNA Repair · doi:10.1016/j.dnarep.2014.03.025 · Cited by 51 · see citing works