Imaging mass spectrometry in microbiology

Mass Spectrometry Sampling Under Ambient Conditions with Desorption Electrospray Ionization

Takáts, Z., Wiseman, J. M., Gologan, B., & Cooks, R. G. (2004) · Science · doi:10.1126/science.1104404 · Cited by 3,369 · see citing works

The Minimal Gene Complement of <i>Mycoplasma genitalium</i>

Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., et al. (1995) · Science · doi:10.1126/science.270.5235.397 · Cited by 2,545 · see citing works

Molecular Imaging of Biological Samples: Localization of Peptides and Proteins Using MALDI-TOF MS

Caprioli, R. M., Farmer, T. B., & Gile, J. (1997) · Analytical Chemistry · doi:10.1021/ac970888i · Cited by 2,234 · see citing works

Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis

Orphan, V. J., House, C. H., Hinrichs, K., McKeegan, K. D., & DeLong, E. F. (2001) · Science · doi:10.1126/science.1061338 · Cited by 1,101 · see citing works

Imaging mass spectrometry

McDonnell, L. A., & Heeren, R. M. A. (2007) · Mass Spectrometry Reviews · doi:10.1002/mas.20124 · Cited by 1,082 · see citing works

Metal Chelation and Inhibition of Bacterial Growth in Tissue Abscesses

Corbin, B. D., Seeley, E. H., Raab, A., Feldmann, J., Miller, M. R., Torres, V. J., Anderson, K. L., Dattilo, B. M., Dunman, P. M., Gerads, R., et al. (2008) · Science · doi:10.1126/science.1152449 · Cited by 857 · see citing works

Laser Ablation Electrospray Ionization for Atmospheric Pressure, in Vivo, and Imaging Mass Spectrometry

Nemes, P., & Vértes, Á. (2007) · Analytical Chemistry · doi:10.1021/ac071181r · Cited by 816 · see citing works

Cannibalism by sporulating bacteria.

González-Pastor, J. E., Hobbs, E. C., & Losick, R. (2003) · Science · doi:10.1126/science.1086462 · Cited by 579 · see citing works

Nanospray desorption electrospray ionization: an ambient method for liquid-extraction surface sampling in mass spectrometry

Roach, P. J., Laskin, J., & Laskin, A. (2010) · The Analyst · doi:10.1039/c0an00312c · Cited by 480 · see citing works

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

Musat, N., Halm, H., Winterholler, B., Höppe, P., Peduzzi, S., Hillion, F., Horréard, F., Amann, R., Jørgensen, B. B., & Kuypers, M. M. M. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0809329105 · Cited by 427 · see citing works

A concise review of mass spectrometry imaging

van Hove, E. R. A., Smith, D. F., & Heeren, R. M. A. (2010) · Journal of Chromatography A · doi:10.1016/j.chroma.2010.01.033 · Cited by 416 · see citing works

Symbiotic streptomycetes provide antibiotic combination prophylaxis for wasp offspring

Kroiß, J., Kaltenpoth, M., Schneider, B., Schwinger, M.-G., Hertweck, C., Maddula, R. K., Strohm, E., & Svatoš, A. (2010) · Nature Chemical Biology · doi:10.1038/nchembio.331 · Cited by 389 · see citing works

Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia

Dekas, A., Poretsky, R., & Orphan, V. J. (2009) · Science · doi:10.1126/science.1178223 · Cited by 380 · see citing works

Atomic Force Microscopy, a Powerful Tool in Microbiology

Dufrêne, Y. F. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.19.5205-5213.2002 · Cited by 377 · see citing works

Microbial metalloproteomes are largely uncharacterized

Cvetkovic, A., Menon, A. L., Thorgersen, M. P., Scott, J. W., Poole, F. L., Jenney, F. E., Lancaster, W. A., Praissman, J. L., Shanmukh, S., Vaccaro, B. J., et al. (2010) · Nature · doi:10.1038/nature09265 · Cited by 363 · see citing works

Molecular imaging by mass spectrometry — looking beyond classical histology

Schwamborn, K., & Caprioli, R. M. (2010) · Nature reviews. Cancer · doi:10.1038/nrc2917 · Cited by 353 · see citing works

High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry

Lechène, C., Hillion, F., McMahon, G., Benson, D. M., Kleinfeld, A. M., Kampf, J. P., Distel, D. L., Luyten, Y. A., Bonventre, J. V., Hentschel, D. M., et al. (2006) · Journal of Biology · doi:10.1186/jbiol42 · Cited by 346 · see citing works

Ion Microprobe Mass Analyzer

Liebl, H. (1967) · Journal of Applied Physics · doi:10.1063/1.1709314 · Cited by 342 · see citing works

Advances in Imaging Secondary Ion Mass Spectrometry for Biological Samples

Boxer, S. G., Kraft, M. L., & Weber, P. M. (2008) · Annual Review of Biophysics · doi:10.1146/annurev.biophys.050708.133634 · Cited by 309 · see citing works

Bioimaging of metals by laser ablation inductively coupled plasma mass spectrometry (LA‐ICP‐MS)

Becker, J. S., Zoriy, M. V., Matusch, A., Wu, B., Salber, D., Palm, C., & Becker, J. S. (2009) · Mass Spectrometry Reviews · doi:10.1002/mas.20239 · Cited by 304 · see citing works

Quantitative Imaging of Nitrogen Fixation by Individual Bacteria Within Animal Cells

Lechène, C., Luyten, Y. A., McMahon, G., & Distel, D. L. (2007) · Science · doi:10.1126/science.1145557 · Cited by 300 · see citing works

Scanning microprobe matrix-assisted laser desorption ionization (SMALDI) mass spectrometry: Instrumentation for sub-micrometer resolved LDI and MALDI surface analysis

Spengler, B., & Hubert, M. (2002) · Journal of the American Society for Mass Spectrometry · doi:10.1016/s1044-0305(02)00376-8 · Cited by 292 · see citing works

Ultrahigh-resolution multicolor colocalization of single fluorescent probes

Lacoste, T. D., Michalet, X., Pinaud, F. F., Chemla, D. S., Alivisatos, A. P., & Weiss, S. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.170286097 · Cited by 285 · see citing works

Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

Wagner, M. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.091208.073233 · Cited by 264 · see citing works

Autoradiography, MALDI-MS, and SIMS-MS Imaging in Pharmaceutical Discovery and Development

Solon, E. G., Schweitzer, A., Stoeckli, M., & Prideaux, B. (2009) · The AAPS Journal · doi:10.1208/s12248-009-9158-4 · Cited by 252 · see citing works

Detection of High Molecular Weight Narrow Polydisperse Polymers up to 1.5 Million Daltons by MALDI Mass Spectrometry

Schriemer, D. C., & Li, L. (1996) · Analytical Chemistry · doi:10.1021/ac960442m · Cited by 243 · see citing works

Translating metabolic exchange with imaging mass spectrometry

Yang, Y., Xu, Y., Straight, P. D., & Dorrestein, P. C. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.252 · Cited by 237 · see citing works

Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS

Behrens, S., Lösekann, T., Pett‐Ridge, J., Weber, P. M., Ng, W.-O., Stevenson, B. S., Hutcheon, I. D., Relman, D. A., & Spormann, A. M. (2008) · Applied and Environmental Microbiology · doi:10.1128/aem.00191-08 · Cited by 237 · see citing works

Desorption electrospray ionization mass spectrometry reveals surface-mediated antifungal chemical defense of a tropical seaweed

Lane, A. L., Nyadong, L., Galhena, A. S., Shearer, T. L., Stout, E. P., Parry, R. M., Kwasnik, M., Wang, M. D., Hay, M. E., Fernández, F. M., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812020106 · Cited by 220 · see citing works

Simulated splashes: Elucidating the mechanism of desorption electrospray ionization mass spectrometry

Costa, A. B., & Cooks, R. G. (2008) · Chemical Physics Letters · doi:10.1016/j.cplett.2008.08.020 · Cited by 216 · see citing works

Simultaneous analysis of microbial identity and function using NanoSIMS

Li, T., Wu, T., Mazéas, L., Toffin, L. M. A. A., Guerquin‐Kern, J., Leblon, G., & Bouchez, T. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01478.x · Cited by 212 · see citing works

Matrix-Enhanced Secondary Ion Mass Spectrometry: A Method for Molecular Analysis of Solid Surfaces

Wu, K. J., & Odom, R. W. (1996) · Analytical Chemistry · doi:10.1021/ac950717i · Cited by 205 · see citing works

Rapid Screening of Anabolic Steroids in Urine by Reactive Desorption Electrospray Ionization

Huang, G., Chen, H., Zhang, X., Cooks, R. G., & Ouyang, Z. (2007) · Analytical Chemistry · doi:10.1021/ac0711079 · Cited by 201 · see citing works

A Three-Protein Signaling Pathway Governing Immunity to a Bacterial Cannibalism Toxin

Ellermeier, C. D., Hobbs, E. C., González‐Pastor, J. E., & Losick, R. M. (2006) · Cell · doi:10.1016/j.cell.2005.11.041 · Cited by 195 · see citing works

Imaging mass spectrometry of intraspecies metabolic exchange revealed the cannibalistic factors of Bacillus subtilis

Liu, W.-T., Yang, Y., Xu, Y., Lamsa, A., Haste, N. M., Yang, J. Y., Ng, J., Gonzalez, D. J., Ellermeier, C. D., Straight, P. D., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1008368107 · Cited by 194 · see citing works

Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants

Schoenian, I., Spiteller, M., Ghaste, M., Wirth, R., Herz, H., & Spiteller, D. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1008441108 · Cited by 191 · see citing works

Consumption of Methane and CO 2 by Methanotrophic Microbial Mats from Gas Seeps of the Anoxic Black Sea

Treude, T., Orphan, V. J., Knittel, K., Gieseke, A., House, C. H., & Boëtius, A. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.02685-06 · Cited by 180 · see citing works

Atmospheric Pressure Infrared MALDI Imaging Mass Spectrometry for Plant Metabolomics

Li, Y., Shrestha, B., & Vértes, Á. (2007) · Analytical Chemistry · doi:10.1021/ac701703f · Cited by 175 · see citing works

Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry

Finzi, J. A., Pett‐Ridge, J., Weber, P. M., Popa, R., Fallon, S., Gunderson, T., Hutcheon, I. D., Nealson, K. H., & Capone, D. G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0810547106 · Cited by 175 · see citing works

Ambient molecular imaging by desorption electrospray ionization mass spectrometry

Wiseman, J. M., Ifa, D. R., Venter, A. R., & Cooks, R. G. (2008) · Nature Protocols · doi:10.1038/nprot.2008.11 · Cited by 172 · see citing works

Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides

Popa, R., Weber, P. M., Pett‐Ridge, J., Finzi, J. A., Fallon, S., Hutcheon, I. D., Nealson, K. H., & Capone, D. G. (2007) · The ISME Journal · doi:10.1038/ismej.2007.44 · Cited by 165 · see citing works

Improved imaging resolution in desorption electrospray ionization mass spectrometry

Kertész, V., & Berkel, G. J. V. (2008) · Rapid Communications in Mass Spectrometry · doi:10.1002/rcm.3662 · Cited by 149 · see citing works

Interactions between Streptomyces coelicolor and Bacillus subtilis : Role of Surfactants in Raising Aerial Structures

Straight, P. D., Willey, J. M., & Kolter, R. (2006) · Journal of Bacteriology · doi:10.1128/jb.00162-06 · Cited by 144 · see citing works

Mass spectrometric imaging of small molecules

Svatoš, A. (2010) · Trends in biotechnology · doi:10.1016/j.tibtech.2010.05.005 · Cited by 142 · see citing works

Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach

Fike, D. A., Gammon, C., Ziebis, W., & Orphan, V. J. (2008) · The ISME Journal · doi:10.1038/ismej.2008.39 · Cited by 141 · see citing works

Imaging Mass Spectrometry with a Low‐Temperature Plasma Probe for the Analysis of Works of Art

Liu, Y., Ma, X., Lin, Z., He, M., Han, G., Yang, C., Xing, Z., Zhang, S., & Zhang, X. (2010) · Angewandte Chemie International Edition · doi:10.1002/anie.200906975 · Cited by 139 · see citing works

Two-Dimensional Mapping of Copper and Zinc in Liver Sections by Laser Ablation–Inductively Coupled Plasma Mass Spectrometry

Kindness, A., Sekaran, C., & Feldmann, J. (2003) · Clinical Chemistry · doi:10.1373/clinchem.2003.022046 · Cited by 138 · see citing works

Use of Field-Based Stable Isotope Probing To Identify Adapted Populations and Track Carbon Flow through a Phenol-Degrading Soil Microbial Community

DeRito, C. M., Pumphrey, G. M., & Madsen, E. L. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.7858-7865.2005 · Cited by 138 · see citing works

The evolving field of imaging mass spectrometry and its impact on future biological research

Watrous, J. D., Alexandrov, T., & Dorrestein, P. C. (2011) · Journal of Mass Spectrometry · doi:10.1002/jms.1876 · Cited by 133 · see citing works

Carbon and nitrogen fluxes associated with the cyanobacterium Aphanizomenon sp. in the Baltic Sea

Ploug, H., Musat, N., Adam, B., Moraru, C. L., Lavik, G., Vágner, T., Bergman, B., & Kuypers, M. M. M. (2010) · The ISME Journal · doi:10.1038/ismej.2010.53 · Cited by 125 · see citing works

Imaging mass spectrometry: Hype or hope?

Heeren, R. M. A., Smith, D. F., Stauber, J., Kaletaş, B. K., & MacAleese, L. (2009) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2009.01.011 · Cited by 124 · see citing works

Imaging Mass Spectrometry with a Low‐Temperature Plasma Probe for the Analysis of Works of Art

Liu, Y., Ma, X., Lin, Z., He, M., Han, G., Yang, C., Xing, Z., Zhang, S., & Zhang, X. (2010) · Angewandte Chemie · doi:10.1002/ange.200906975 · Cited by 120 · see citing works

Co‐occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

Halm, H., Musat, N., Lam, P., Langlois, R. J., Musat, F., Peduzzi, S., Lavik, G., Schubert, C. J., Singha, B., LaRoche, J., et al. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01917.x · Cited by 114 · see citing works

Visualizing the spatial distribution of secondary metabolites produced by marine cyanobacteria and sponges via MALDI-TOF imaging

Esquenazi, E., Coates, C., Simmons, L., Gonzalez, D. J., Gerwick, W. H., & Dorrestein, P. C. (2008) · Molecular BioSystems · doi:10.1039/b720018h · Cited by 114 · see citing works

Analysis of Submonolayers on Silver by Negative Secondary Ion Emission

Benninghoven, A. (1969) · physica status solidi (b) · doi:10.1002/pssb.19690340267 · Cited by 108 · see citing works

In situ localisation and quantification of surfactins in a Bacillus subtilis swarming community by imaging mass spectrometry

Debois, D., Hamze, K., Guérineau, V., Caër, J. L., Holland, I. B., Lopes, P., Ouazzani, J., Séror, S. J., Brunelle, A., & Laprévôte, O. (2008) · PROTEOMICS · doi:10.1002/pmic.200701025 · Cited by 105 · see citing works

Capturing Bacterial Metabolic Exchange Using Thin Film Desorption Electrospray Ionization-Imaging Mass Spectrometry

Watrous, J. D., Hendricks, N. G., Meehan, M. J., & Dorrestein, P. C. (2010) · Analytical Chemistry · doi:10.1021/ac9027388 · Cited by 102 · see citing works

Why don’t biologists use SIMS?

Heeren, R. M. A., McDonnell, L. A., Amstalden, E. R., Luxembourg, S. L., Altelaar, M. A. F., & Piersma, S. R. (2006) · Applied Surface Science · doi:10.1016/j.apsusc.2006.02.134 · Cited by 101 · see citing works

Quantification of Bacterial Chemotaxis in Porous Media Using Magnetic Resonance Imaging

Olson, M. S., Ford, R. M., Smith, J. A., & Fernández, E. (2004) · Environmental Science & Technology · doi:10.1021/es035236s · Cited by 98 · see citing works

Co‐occurrence of denitrification and nitrogen fixation in a meromictic lake, Lake Cadagno (Switzerland)

Halm, H., Musat, N., Lam, P., Langlois, R. J., Musat, F., Peduzzi, S., Lavik, G., Schubert, C. J., Sinha, B., LaRoche, J., et al. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01955.x · Cited by 89 · see citing works

Imaging and 3D Elemental Characterization of Intact Bacterial Spores by High-Resolution Secondary Ion Mass Spectrometry

Ghosal, S., Fallon, S., Leighton, T., Wheeler, K. E., Kristo, M., Hutcheon, I. D., & Weber, P. M. (2008) · Analytical Chemistry · doi:10.1021/ac8006279 · Cited by 87 · see citing works

New developments in the surface analysis of solids

Benninghoven, A. (1973) · Applied Physics B · doi:10.1007/bf00886799 · Cited by 77 · see citing works

Exploration of Inorganic C and N Assimilation by Soil Microbes with Time-of-Flight Secondary Ion Mass Spectrometry

Cliff, J., Gaspar, D. J., Bottomley, P. J., & Myrold, D. D. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.8.4067-4073.2002 · Cited by 73 · see citing works

Fluorescent In Situ Hybridization and Micro‐autoradiography Applied to Ecophysiology in Soil

Rogers, S., Moorman, T. B., & Ong, S. K. (2007) · Soil Science Society of America Journal · doi:10.2136/sssaj2006.0105 · Cited by 71 · see citing works

Biological Cluster Mass Spectrometry

Winograd, N., & Garrison, B. J. (2010) · Annual Review of Physical Chemistry · doi:10.1146/annurev.physchem.040808.090249 · Cited by 71 · see citing works

Higher sensitivity secondary ion mass spectrometry of biological molecules for high resolution, chemically specific imaging

McDonnell, L. A., Heeren, R. M. A., de Lange, R. P. J., & Fletcher, I. W. (2006) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2006.05.003 · Cited by 70 · see citing works

Biomarkers at the microscopic range: ToF‐SIMS molecular imaging of Archaea‐derived lipids in a microbial mat

Thiel, V., Heim, C., Arp, G., Hahmann, U., Sjövall, P., & Lausmaa, J. (2007) · Geobiology · doi:10.1111/j.1472-4669.2007.00119.x · Cited by 67 · see citing works

Reactive desorption electrospray ionization mass spectrometry (DESI-MS) of natural products of a marine alga

Nyadong, L., Hohenstein, E. G., Galhena, A. S., Lane, A. L., Kubanek, J., Sherrill, C. D., & Fernández, F. M. (2009) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-009-2674-3 · Cited by 66 · see citing works

Subsurface Biomolecular Imaging of Streptomyces coelicolor Using Secondary Ion Mass Spectrometry

Vaidyanathan, S., Fletcher, J. S., Goodacre, R., Lockyer, N. P., Micklefield, J., & Vickerman, J. C. (2008) · Analytical Chemistry · doi:10.1021/ac701921e · Cited by 66 · see citing works

MALDI Mass Spectrometry Imaging, from its Origins up to Today: The State of the Art

Francese, S., Dani, F. R., Traldi, P., Mastrobuoni, G., Pieraccini, G., & Moneti, G. (2009) · Combinatorial Chemistry & High Throughput Screening · doi:10.2174/138620709787315454 · Cited by 66 · see citing works

Laser desorption postionization for imaging MS of biological material

Akhmetov, A., Moore, J. F., Gasper, G. L., Koin, P. J., & Hanley, L. (2010) · Journal of Mass Spectrometry · doi:10.1002/jms.1716 · Cited by 61 · see citing works

Metabolite imaging using matrix-enhanced surface-assisted laser desorption/ionization mass spectrometry (ME-SALDI-MS)

Liu, Q., Xiao, Y., Pagan-Miranda, C., Chiu, Y. M., & He, L. (2008) · Journal of the American Society for Mass Spectrometry · doi:10.1016/j.jasms.2008.09.011 · Cited by 60 · see citing works

Connecting Chemotypes and Phenotypes of Cultured Marine Microbial Assemblages by Imaging Mass Spectrometry

Yang, Y., Xu, Y., Kersten, R. D., Liu, W., Meehan, M. J., Moore, B. S., Bandeira, N., & Dorrestein, P. C. (2011) · Angewandte Chemie International Edition · doi:10.1002/anie.201101225 · Cited by 56 · see citing works

Morphological and chemical studies of pathological human and mice brain at the subcellular level: Correlation between light, electron, and nanosims microscopies

Quintana, C., Wu, T., Delatour, B., Dhénain, M., Guerquin‐Kern, J., & Croisy, A. (2007) · Microscopy Research and Technique · doi:10.1002/jemt.20403 · Cited by 54 · see citing works

Detection of In Situ Derivatized Peptides in Microbial Biofilms by Laser Desorption 7.87 eV Postionizaton Mass Spectrometry

Edirisinghe, P. D., Moore, J. F., Skinner-Nemec, K. A., Lindberg, C., Giometti, C. S., Veryovkin, I. V., Hunt, J. E., Pellin, M. J., & Hanley, L. (2006) · Analytical Chemistry · doi:10.1021/ac0615605 · Cited by 34 · see citing works

Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing 13 C‐labelled substrates in pure culture and in soil

Pumphrey, G. M., Hanson, B. T., Chandra, S., & Madsen, E. L. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01757.x · Cited by 32 · see citing works

Analysis of archaeal core ether lipids using Time of Flight–Secondary Ion Mass Spectrometry (ToF‐SIMS): Exploring a new prospect for the study of biomarkers in geobiology

Thiel, V., Toporski, J., Schumann, G., Sjövall, P., & Lausmaa, J. (2006) · Geobiology · doi:10.1111/j.1472-4669.2006.00093.x · Cited by 28 · see citing works

TOF-SIMS imaging of chlorhexidine-digluconate transport in frozen hydrated biofilms of the fungus Candida albicans

Tyler, B. J., Rangaranjan, S., Möller, J., Beumer, A., & Arlinghaus, H. F. (2006) · Applied Surface Science · doi:10.1016/j.apsusc.2006.02.278 · Cited by 26 · see citing works

High resolution static SIMS imaging by time of flight SIMS

Hoshi, T., & Kudo, M. (2002) · Applied Surface Science · doi:10.1016/s0169-4332(02)00834-6 · Cited by 24 · see citing works

Microscopic Chemical Imaging with Laser Desorption Mass Spectrometry

Savina, M. R., & Lykke, K. R. (1997) · Analytical Chemistry · doi:10.1021/ac970115u · Cited by 23 · see citing works

Diagnostic value of MRI in tuberculous meningitis

Tayfun, C., Üçöz, T., Taşar, M., Ataç, K., Oğur, E., Öztürk, T., & Yinanç, M. A. (1996) · European Radiology · doi:10.1007/bf00180618 · Cited by 22 · see citing works

Dynamic SIMS ion microscopy imaging of individual bacterial cells for studies of isotopically labeled molecules

Chandra, S., Pumphrey, G. M., Abraham, J. M., & Madsen, E. L. (2008) · Applied Surface Science · doi:10.1016/j.apsusc.2008.05.129 · Cited by 20 · see citing works

NanoSIMS perspectives for nuclear astrophysics

Höppe, P. (2002) · New Astronomy Reviews · doi:10.1016/s1387-6473(02)00206-3 · Cited by 18 · see citing works

Pulsed-Gas Glow Discharge for Ultrahigh Mass Resolution Measurements with Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Watson, C. H., Barshick, C. M., Wronka, J., Laukien, F. H., & Eyler, J. R. (1996) · Analytical Chemistry · doi:10.1021/ac9508412 · Cited by 18 · see citing works

A novel method for exploring elemental composition of microbial communities: Laser ablation-inductively coupled plasma-mass spectrometry of intact bacterial colonies

Latimer, J., Stokes, S. L., Graham, A. I., Bunch, J., Jackson, R. J., McLeod, C. W., & Poole, R. K. (2009) · Journal of Microbiological Methods · doi:10.1016/j.mimet.2009.10.001 · Cited by 12 · see citing works

'Inconceivable' Bugs Eat Methane on the Ocean Floor

Zimmer, C. W. E. (2001) · Science · doi:10.1126/science.293.5529.418 · Cited by 4 · see citing works

Magnetic Resonance imaging (MRI) in detection of Bifidobacterium longum and Clostridium novyi-NT labeled with superparamagnetic iron oxide (SPIO) nanoparticlePreprint

Wang, J., Zhang, X., Zhou, D., Wang, Q., & Li, D. (2009) · Nature Precedings · doi:10.1038/npre.2009.3435.1 · Cited by 3 · see citing works

Secondary ion mass spectrometry : SIMS IX : Proceedings of the Ninth International Conference on Secondary Ion Mass Spectrometry (SIMS IX) : the Hotel Yokohama and the Sangyo-Boeki Center Building Yokohama, Japan 7-12 November, 1993

Benninghoven, A. (1994) · Wiley eBooks · Cited by 1 · see citing works

Surface profiling of lithium with a laser-desorption mass-spectrometer microprobe

Bickel, G. A., & Adams, H. M. (1999) · Applied Optics · doi:10.1364/ao.38.001488 · Cited by 1 · see citing works

The ecology and biogeochemistry of stream biofilms

Battin, T. J., Besemer, K., Bengtsson, M. M., Romani, A. M., & Packmann, A. I. (2016) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2016.15 · Cited by 1,163 · see citing works

Critical review on biofilm methods

Azeredo, J., Azevedo, N. F., Briandet, R., Cerca, N., Coenye, T., Costa, A. R., Desvaux, M., Bonaventura, G. D., Hébraud, M., Jaglic, Z., et al. (2016) · Critical Reviews in Microbiology · doi:10.1080/1040841x.2016.1208146 · Cited by 1,060 · see citing works

Signaling in the Rhizosphere

Venturi, V., & Keel, C. (2016) · Trends in Plant Science · doi:10.1016/j.tplants.2016.01.005 · Cited by 678 · see citing works

Metabolic potential of endophytic bacteria

Brader, G., Compant, S., Mitter, B., Trognitz, F., & Sessitsch, A. (2013) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2013.09.012 · Cited by 620 · see citing works

Priority effects in microbiome assembly

Debray, R., Herbert, R. A., Jaffe, A. L., Crits‐Christoph, A., Power, M. E., & Koskella, B. L. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-021-00604-w · Cited by 559 · see citing works

Mass spectrometry-based metabolomics in microbiome investigations

Bauermeister, A., Mannochio-Russo, H., Costa-Lotufo, L. V., Jarmusch, A. K., & Dorrestein, P. C. (2021) · Nature Reviews Microbiology · doi:10.1038/s41579-021-00621-9 · Cited by 538 · see citing works

Metabolic Resource Allocation in Individual Microbes Determines Ecosystem Interactions and Spatial Dynamics

Harcombe, W. R., Riehl, W. J., Dukovski, I., Granger, B. R., Betts, A., Lang, A., Bonilla, G. M., Kar, A., Leiby, N., Mehta, P., et al. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.03.070 · Cited by 518 · see citing works

FDR-controlled metabolite annotation for high-resolution imaging mass spectrometry

Palmer, A., Phapale, P. B., Chernyavsky, I., Lavigne, R., Fay, D., Tarasov, A., Kovalev, V., Fuchser, J., Nikolenko, S., Pineau, C., et al. (2016) · Nature Methods · doi:10.1038/nmeth.4072 · Cited by 499 · see citing works

Actinomycetes: Still a source of novel antibiotics

Genilloud, O. (2017) · Natural Product Reports · doi:10.1039/c7np00026j · Cited by 465 · see citing works

Chemical ecology of antibiotic production by actinomycetes

van der Meij, A., Worsley, S. F., Hutchings, M. I., & van Wezel, G. P. (2017) · FEMS Microbiology Reviews · doi:10.1093/femsre/fux005 · Cited by 453 · see citing works

Secondary metabolism in Trichoderma – Chemistry meets genomics

Zeilinger, S., Gruber, S. G., Bansal, R., & Mukherjee, P. K. (2016) · Fungal Biology Reviews · doi:10.1016/j.fbr.2016.05.001 · Cited by 411 · see citing works

Microbial communication leading to the activation of silent fungal secondary metabolite gene clusters

Netzker, T., Fischer, J., Weber, J., Mattern, D. J., König, C. C., Valiante, V., Schroeckh, V., & Brakhage, A. A. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00299 · Cited by 393 · see citing works

Fermented Foods as Experimentally Tractable Microbial Ecosystems

Wolfe, B. E., & Dutton, R. J. (2015) · Cell · doi:10.1016/j.cell.2015.02.034 · Cited by 386 · see citing works

Interspecies Interactions Stimulate Diversification of the Streptomyces coelicolor Secreted Metabolome

Traxler, M. F., Watrous, J. D., Alexandrov, T., Dorrestein, P. C., & Kolter, R. (2013) · mBio · doi:10.1128/mbio.00459-13 · Cited by 382 · see citing works

Detection and imaging of quorum sensing in Pseudomonas aeruginosa biofilm communities by surface-enhanced resonance Raman scattering

Bodelón, G., Montes‐García, V., López‐Puente, V., Hill, E. H., Hamon, C., Sanz‐Ortiz, M. N., Rodal‐Cedeira, S., Costas, C., Celiksoy, S., Pérez‐Juste, I., et al. (2016) · Nature Materials · doi:10.1038/nmat4720 · Cited by 362 · see citing works

Stimulated Emission Depletion Microscopy

Blom, H., & Widengren, J. (2017) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00653 · Cited by 344 · see citing works

Bioactive Secondary Metabolites from Trichoderma spp. against Phytopathogenic Fungi

Khan, R. A. A., Najeeb, S., Hussain, S., Xie, B., & Li, Y. (2020) · Microorganisms · doi:10.3390/microorganisms8060817 · Cited by 324 · see citing works

Chemical Glycoproteomics

Palaniappan, K. K., & Bertozzi, C. R. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.6b00023 · Cited by 276 · see citing works

Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain

Baveye, P. C., Otten, W., Kravchenko, A., Balseiro‐Romero, M., Beckers, É., Chalhoub, M., Darnault, C. J. G., Eickhorst, T., Garnier, P., Hapca, S. M., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01929 · Cited by 250 · see citing works

MS/MS networking guided analysis of molecule and gene cluster families

Nguyen, D. D., Wu, C.-H., Moree, W. J., Lamsa, A., Medema, M. H., Zhao, X., Gavilán, R. G., Aparicio, M., Atencio, L. A., Jackson, C., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1303471110 · Cited by 249 · see citing works

Options and Limitations in Clinical Investigation of Bacterial Biofilms

Magana, M., Sereti, C., Ioannidis, A., Mitchell, C. A., Ball, A. R., Magiorkinis, E., Chatzipanagiotou, S., Hamblin, M. R., Hadjifrangiskou, M., & Tegos, G. P. (2018) · Clinical Microbiology Reviews · doi:10.1128/cmr.00084-16 · Cited by 243 · see citing works

MALDI imaging mass spectrometry: statistical data analysis and current computational challenges

Alexandrov, T. (2012) · BMC Bioinformatics · doi:10.1186/1471-2105-13-s16-s11 · Cited by 237 · see citing works

Spatial metabolomics of in situ host–microbe interactions at the micrometre scale

Geier, B., Sogin, E. M., Michellod, D., Janda, M., Kompauer, M., Spengler, B., Dubilier, N., & Liebeke, M. (2020) · Nature Microbiology · doi:10.1038/s41564-019-0664-6 · Cited by 234 · see citing works

Microbial metabolic exchange—the chemotype-to-phenotype link

Phelan, V. V., Liu, W.-T., Pogliano, K., & Dorrestein, P. C. (2011) · Nature Chemical Biology · doi:10.1038/nchembio.739 · Cited by 223 · see citing works

Microbiota in Tumors: From Understanding to Application

Xie, Y., Xie, F., Zhou, X., Zhang, L., Yang, B., Huang, J., Wang, F., Yan, H., Zhang, L., Zhang, L., et al. (2022) · Advanced Science · doi:10.1002/advs.202200470 · Cited by 211 · see citing works

Stable isotope-resolved metabolomics and applications for drug development

Fan, T. W. ‐., Lorkiewicz, P. K., Sellers, K., Moseley, H., Higashi, R. M., & Lane, A. N. (2011) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2011.12.007 · Cited by 209 · see citing works

Mass spectrometry imaging and profiling of single cells

Lanni, E. J., Rubakhin, S. S., & Sweedler, J. V. (2012) · Journal of Proteomics · doi:10.1016/j.jprot.2012.03.017 · Cited by 201 · see citing works

Mechanisms of synergy in polymicrobial infections

Murray, J. L., Connell, J. L., Stacy, A., Turner, K. H., & Whiteley, M. (2014) · The Journal of Microbiology · doi:10.1007/s12275-014-4067-3 · Cited by 201 · see citing works

Electrochemical sensors for rapid diagnosis of pathogens in real time

Simoska, O., & Stevenson, K. J. (2019) · The Analyst · doi:10.1039/c9an01747j · Cited by 195 · see citing works

Quantitative Mass Spectrometry Imaging of Biological Systems

Unsihuay, D., Sanchez, D. M., & Laskin, J. (2021) · Annual Review of Physical Chemistry · doi:10.1146/annurev-physchem-061020-053416 · Cited by 193 · see citing works

A genetics-free method for high-throughput discovery of cryptic microbial metabolites

Xu, F. Y., Wu, Y., Zhang, C., Davis, K. M., Moon, K., Bushin, L. B., & Seyedsayamdost, M. R. (2018) · Nature Chemical Biology · doi:10.1038/s41589-018-0193-2 · Cited by 189 · see citing works

Zooming in to see the bigger picture: Microfluidic and nanofabrication tools to study bacteria

Hol, F. J. H., & Dekker, C. (2014) · Science · doi:10.1126/science.1251821 · Cited by 176 · see citing works

A road map for the development of community systems (CoSy) biology

Zengler, K., & Palsson, B. Ø. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2763 · Cited by 180 · see citing works

The chemical ecology of cyanobacteria

Leão, P. N., Engene, N., Antunes, A., Gerwick, W. H., & Vasconcelos, V. M. (2012) · Natural Product Reports · doi:10.1039/c2np00075j · Cited by 173 · see citing works

Ambient Mass Spectrometry Imaging Using Direct Liquid Extraction Techniques

Laskin, J., & Lanekoff, I. (2015) · Analytical Chemistry · doi:10.1021/acs.analchem.5b04188 · Cited by 174 · see citing works

Mining the Metabiome: Identifying Novel Natural Products from Microbial Communities

Milshteyn, A., Schneider, J. S., & Brady, S. F. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2014.08.006 · Cited by 173 · see citing works

Categorizing Cells on the Basis of their Chemical Profiles: Progress in Single-Cell Mass Spectrometry

Comi, T. J., Do, T. D., Rubakhin, S. S., & Sweedler, J. V. (2017) · Journal of the American Chemical Society · doi:10.1021/jacs.6b12822 · Cited by 174 · see citing works

Laser spectrometry for multi-elemental imaging of biological tissues

Sancey, L., Motto‐Ros, V., Busser, B., Kotb, S., Benoit, J., Piednoir, A., Lux, F., Tillement, O., Panczer, G., & Yu, J. (2014) · Scientific Reports · doi:10.1038/srep06065 · Cited by 170 · see citing works

Primer on Agar-Based Microbial Imaging Mass Spectrometry

Yang, J. Y., Phelan, V. V., Simkovsky, R., Watrous, J. D., Trial, R. M., Fleming, T. C., Wenter, R., Moore, B. S., Golden, S. S., Pogliano, K., et al. (2012) · Journal of Bacteriology · doi:10.1128/jb.00823-12 · Cited by 169 · see citing works

Concepts and Methods to Access Novel Antibiotics from Actinomycetes

Hug, J. J., Bader, C. D., Remškar, M., Cirnski, K., & Müller, R. (2018) · Antibiotics · doi:10.3390/antibiotics7020044 · Cited by 168 · see citing works

Integrated circuit-based electrochemical sensor for spatially resolved detection of redox-active metabolites in biofilms

Bellin, D. L., Sakhtah, H., Rosenstein, J. K., Levine, P. M., Thimot, J., Emmett, K., Dietrich, L. E. P., & Shepard, K. L. (2014) · Nature Communications · doi:10.1038/ncomms4256 · Cited by 166 · see citing works

Metal ion acquisition in Staphylococcus aureus: overcoming nutritional immunity

Cassat, J. E., & Skaar, E. P. (2012) · Seminars in Immunopathology · doi:10.1007/s00281-011-0294-4 · Cited by 155 · see citing works

Endophyte research: going beyond isolation and metabolite documentation

Suryanarayanan, T. S. (2013) · Fungal ecology · doi:10.1016/j.funeco.2013.09.007 · Cited by 155 · see citing works

Air Flow-Assisted Ionization Imaging Mass Spectrometry Method for Easy Whole-Body Molecular Imaging under Ambient Conditions

Luo, Z., He, J., Chen, Y., He, J., Gong, T., Tang, F., Wang, X., Zhang, R., Huang, L. F., Zhang, L., et al. (2013) · Analytical Chemistry · doi:10.1021/ac400009s · Cited by 151 · see citing works

Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites

Covington, B. C., MCLEAN, J. A. J., & Bachmann, B. O. (2016) · Natural Product Reports · doi:10.1039/c6np00048g · Cited by 150 · see citing works

Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses

Kampa, A., Gagunashvili, A. N., Gulder, T. A. M., Morinaka, B. I., Daolio, C., Godejohann, M., Miao, V., Piel, J., & Andrésson, Ó. S. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1305867110 · Cited by 147 · see citing works

Tools for the Microbiome: Nano and Beyond

Biteen, J. S., Blainey, P. C., Cardon, Z. G., Chun, M., Church, G. M., Dorrestein, P. C., Fraser, S. E., Gilbert, J. A., Jansson, J. K., Knight, R. D., et al. (2015) · ACS Nano · doi:10.1021/acsnano.5b07826 · Cited by 145 · see citing works

Specialised metabolites regulating antibiotic biosynthesis inStreptomycesspp.

Niu, G., Chater, K. F., Tian, Y., Zhang, J., & Tan, H. (2016) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuw012 · Cited by 144 · see citing works

Mycelium-mediated transfer of water and nutrients stimulates bacterial activity in dry and oligotrophic environments

Worrich, A., Stryhanyuk, H., Musat, N., König, S., Banitz, T., Centler, F., Frank, K., Thullner, M., Harms, H., Richnow, H. H., et al. (2017) · Nature Communications · doi:10.1038/ncomms15472 · Cited by 141 · see citing works

Exploring Three-Dimensional Matrix-Assisted Laser Desorption/Ionization Imaging Mass Spectrometry Data: Three-Dimensional Spatial Segmentation of Mouse Kidney

Trede, D., Schiffler, S., Becker, M. S., Wirtz, S., Steinhorst, K., Strehlow, J., Aichler, M., Kobarg, J. H., Oetjen, J., Dyatlov, A. A., et al. (2012) · Analytical Chemistry · doi:10.1021/ac300673y · Cited by 136 · see citing works

Structure, properties, and biological functions of nonribosomal lipopeptides from pseudomonads

Götze, S., & Stallforth, P. (2019) · Natural Product Reports · doi:10.1039/c9np00022d · Cited by 138 · see citing works

Illumination of growth, division and secretion by metabolic labeling of the bacterial cell surface

Siegrist, M. S., Swarts, B. M., Fox, D., Lim, S. A., & Bertozzi, C. R. (2015) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuu012 · Cited by 132 · see citing works

Metabolomic strategies for the identification of new enzyme functions and metabolic pathways

Prosser, G. A., Larrouy-Maumus, G. J., & de Carvalho, L. P. S. (2014) · EMBO Reports · doi:10.15252/embr.201338283 · Cited by 137 · see citing works

Application and Perspectives of MALDI–TOF Mass Spectrometry in Clinical Microbiology Laboratories

Torres-Sangiao, E., Rodríguez, C. L., & García-Riestra, C. (2021) · Microorganisms · doi:10.3390/microorganisms9071539 · Cited by 140 · see citing works

Going local: technologies for exploring bacterial microenvironments

Wessel, A. K., Hmelo, L. R., Parsek, M. R., & Whiteley, M. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3010 · Cited by 131 · see citing works

Enzymatic resistance to the lipopeptide surfactin as identified through imaging mass spectrometry of bacterial competition

Hoefler, B. C., Gorzelnik, K. V., Yang, J. Y., Hendricks, N. G., Dorrestein, P. C., & Straight, P. D. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1205586109 · Cited by 130 · see citing works

Multimodal Imaging Mass Spectrometry: Next Generation Molecular Mapping in Biology and Medicine

Neumann, E. K., Djambazova, K. V., Caprioli, R. M., & Spraggins, J. M. (2020) · Journal of the American Society for Mass Spectrometry · doi:10.1021/jasms.0c00232 · Cited by 130 · see citing works

Ambient ionization and miniature mass spectrometry system for chemical and biological analysis

Ma, X., & Ouyang, Z. (2016) · TrAC Trends in Analytical Chemistry · doi:10.1016/j.trac.2016.04.009 · Cited by 126 · see citing works

3D Imaging of Nanoparticle Distribution in Biological Tissue by Laser-Induced Breakdown Spectroscopy

Gimènez, Y., Busser, B., Trichard, F., Kulesza, A. J., Laurent, J.-M., Zaun, V., Lux, F., Benoit, J., Panczer, G., Dugourd, P., et al. (2016) · Scientific Reports · doi:10.1038/srep29936 · Cited by 125 · see citing works

Metabolic Profiling Directly from the Petri Dish Using Nanospray Desorption Electrospray Ionization Imaging Mass Spectrometry

Watrous, J. D., Roach, P. J., Heath, B. S., Alexandrov, T., Laskin, J., & Dorrestein, P. C. (2013) · Analytical Chemistry · doi:10.1021/ac4023154 · Cited by 121 · see citing works

Electrochemical camera chip for simultaneous imaging of multiple metabolites in biofilms

Bellin, D. L., Sakhtah, H., Zhang, Y., Price‐Whelan, A., Dietrich, L. E. P., & Shepard, K. L. (2016) · Nature Communications · doi:10.1038/ncomms10535 · Cited by 120 · see citing works

Imaging the Unimaginable: Desorption Electrospray Ionization – Imaging Mass Spectrometry (DESI-IMS) in Natural Product Research

Parrot, D., Papazian, S., Foil, D. H., & Taşdemir, D. (2018) · Planta Medica · doi:10.1055/s-0044-100188 · Cited by 119 · see citing works

Enhancing chemical and biological diversity by co-cultivation

Selegato, D. M., & Castro‐Gamboa, I. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1117559 · Cited by 124 · see citing works

Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis

Bleich, R. M., Watrous, J. D., Dorrestein, P. C., Bowers, A. A., & Shank, E. A. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1414272112 · Cited by 117 · see citing works

Organic N molecules in the soil solution: what is known, what is unknown and the path forwards

Warren, C. R. (2013) · Plant and Soil · doi:10.1007/s11104-013-1939-y · Cited by 115 · see citing works

Colloquium: 100 years of mass spectrometry: Perspectives and future trends

Maher, S., Jjunju, F. P. M., & Taylor, S. (2015) · Reviews of Modern Physics · doi:10.1103/revmodphys.87.113 · Cited by 110 · see citing works

Linking environmental processes to the in situ functioning of microorganisms by high‐resolution secondary ion mass spectrometry (NanoSIMS) and scanning transmission X‐ray microscopy (STXM)

Behrens, S., Kappler, A. A., & Obst, M. (2012) · Environmental Microbiology · doi:10.1111/j.1462-2920.2012.02724.x · Cited by 103 · see citing works

Extracellular signaling and multicellularity in Bacillus subtilis

Shank, E. A., & Kolter, R. (2011) · Current Opinion in Microbiology · doi:10.1016/j.mib.2011.09.016 · Cited by 103 · see citing works

Rapid Evaporative Ionization Mass Spectrometry Imaging Platform for Direct Mapping from Bulk Tissue and Bacterial Growth Media

Golf, O., Strittmatter, N., Karancsi, T., Pringle, S. D., Speller, A. V. M., Mróz, A., Kinross, J. K., Abbassi‐Ghadi, N., Jones, E. A., & Takáts, Z. (2015) · Analytical Chemistry · doi:10.1021/ac5046752 · Cited by 101 · see citing works

Spatiotemporal Monitoring of the Antibiome Secreted by Bacillus Biofilms on Plant Roots Using MALDI Mass Spectrometry Imaging

Debois, D., Jourdan, E., Smargiasso, N., Thonart, P., Pauw, E. D., & Ongena, M. (2014) · Analytical Chemistry · doi:10.1021/ac500290s · Cited by 101 · see citing works

Recent advances in matrix‐assisted laser desorption/ionisation mass spectrometry imaging (MALDI‐MSI) for in situ analysis of endogenous molecules in plants

Qin, L., Zhang, Y., Liu, Y., He, H., Han, M., Li, Y., Zeng, M., & Wang, X. (2018) · Phytochemical Analysis · doi:10.1002/pca.2759 · Cited by 100 · see citing works

Dereplication of microbial extracts and related analytical technologies

Ito, T., & Masubuchi, M. (2014) · The Journal of Antibiotics · doi:10.1038/ja.2014.12 · Cited by 100 · see citing works

The importance of mass spectrometric dereplication in fungal secondary metabolite analysis

Nielsen, K. F., & Larsen, T. O. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00071 · Cited by 99 · see citing works

Toward a global picture of bacterial secondary metabolism

Seyedsayamdost, M. R. (2019) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-019-02136-y · Cited by 96 · see citing works

Unravelling interspecies interactions across heterogeneities in complex biofilm communities

Røder, H. L., Olsen, N. M. C., Whiteley, M., & Burmølle, M. (2019) · Environmental Microbiology · doi:10.1111/1462-2920.14834 · Cited by 92 · see citing works

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures

Garg, N., Kapono, C. A., Lim, Y. W., Koyama, N., Vermeij, M. J. A., Conrad, D. J., Rohwer, F. L., & Dorrestein, P. C. (2014) · International Journal of Mass Spectrometry · doi:10.1016/j.ijms.2014.06.005 · Cited by 92 · see citing works

Defining motility in the Staphylococci

Pollitt, E. J. G., & Diggle, S. P. (2017) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-017-2507-z · Cited by 91 · see citing works

High-Speed Tandem Mass Spectrometric in Situ Imaging by Nanospray Desorption Electrospray Ionization Mass Spectrometry

Lanekoff, I., Burnum-Johnson, K., Thomas, M., Short, J., Carson, J. P., Cha, J., Dey, S. K., Yang, P., Conaway, M. C. P., & Laskin, J. (2013) · Analytical Chemistry · doi:10.1021/ac401760s · Cited by 90 · see citing works

Metabolomics in the natural products field – a gateway to novel antibiotics

Wu, C., Kim, H. K., van Wezel, G. P., & Choi, Y. H. (2015) · Drug Discovery Today Technologies · doi:10.1016/j.ddtec.2015.01.004 · Cited by 87 · see citing works

Adhesive Fiber Stratification in Uropathogenic Escherichia coli Biofilms Unveils Oxygen-Mediated Control of Type 1 Pili

Floyd, K. A., Moore, J. L., Eberly, A. R., Good, J. A. D., Shaffer, C. L., Zaver, H. B., Almqvist, F., Skaar, E. P., Caprioli, R. M., & Hadjifrangiskou, M. (2015) · PLoS Pathogens · doi:10.1371/journal.ppat.1004697 · Cited by 86 · see citing works

Raman microspectroscopy, surface-enhanced Raman scattering microspectroscopy, and stable-isotope Raman microspectroscopy for biofilm characterization

Ivleva, N. P., Kubryk, P., & Nießner, R. (2017) · Analytical and Bioanalytical Chemistry · doi:10.1007/s00216-017-0303-0 · Cited by 85 · see citing works

Advanced Multidimensional Separations in Mass Spectrometry: Navigating the Big Data Deluge

May, J. C., & MCLEAN, J. A. J. (2016) · Annual Review of Analytical Chemistry · doi:10.1146/annurev-anchem-071015-041734 · Cited by 84 · see citing works

Beyond Plant Microbiome Composition: Exploiting Microbial Functions and Plant Traits via Integrated Approaches

Song, C., Zhu, F., Carrión, V. J., & Cordovez, V. (2020) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2020.00896 · Cited by 82 · see citing works

Advances in microbial culturing conditions to activate silent biosynthetic gene clusters for novel metabolite production

Tomm, H., Ucciferri, L., & Ross, A. C. (2019) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-019-02198-y · Cited by 81 · see citing works

Real-Time Electrochemical Detection of Pseudomonas aeruginosa Phenazine Metabolites Using Transparent Carbon Ultramicroelectrode Arrays

Simoska, O., Sans, M., Fitzpatrick, M. D., Crittenden, C. M., Eberlin, L. S., Shear, J. B., & Stevenson, K. J. (2018) · ACS Sensors · doi:10.1021/acssensors.8b01152 · Cited by 79 · see citing works

Imaging beyond the proteome

Chang, P. V., & Bertozzi, C. R. (2012) · Chemical Communications · doi:10.1039/c2cc31845h · Cited by 78 · see citing works

A Synthetic Community System for Probing Microbial Interactions Driven by Exometabolites

Chodkowski, J. L., & Shade, A. L. (2017) · mSystems · doi:10.1128/msystems.00129-17 · Cited by 76 · see citing works

An analysis of the sponge Acanthostrongylophora igens' microbiome yields an actinomycete that produces the natural product manzamine A

Waters, A. L., Peraud, O., Kasanah, N., Sims, J. W., Kothalawala, N., Anderson, M. A., Abbas, S. H., Rao, K. V., Jupally, V. R., Kelly, M., et al. (2014) · Frontiers in Marine Science · doi:10.3389/fmars.2014.00054 · Cited by 75 · see citing works

Direct Analysis of Intact Proteins from Escherichia coli Colonies by Liquid Extraction Surface Analysis Mass Spectrometry

Randall, E. C., Bunch, J., & Cooper, H. J. (2014) · Analytical Chemistry · doi:10.1021/ac503349d · Cited by 75 · see citing works

Spatial analysis of drug absorption, distribution, metabolism, and toxicology using mass spectrometry imaging

Spruill, M. L., Maletić‐Savatić, M., Martin, H., Li, F., & Liu, X. (2022) · Biochemical Pharmacology · doi:10.1016/j.bcp.2022.115080 · Cited by 74 · see citing works

Ion sources for mass spectrometric identification and imaging of molecular species

Bhardwaj, C., & Hanley, L. (2014) · Natural Product Reports · doi:10.1039/c3np70094a · Cited by 74 · see citing works

Microbial metabolomics: innovation, application, insight

Aldridge, B. B., & Rhee, K. Y. (2014) · Current Opinion in Microbiology · doi:10.1016/j.mib.2014.06.009 · Cited by 73 · see citing works

The bacterial chemical repertoire mediates metabolic exchange within gut microbiomes

Rath, C. M. B., & Dorrestein, P. C. (2011) · Current Opinion in Microbiology · doi:10.1016/j.mib.2011.12.009 · Cited by 73 · see citing works

High-throughput platforms for metabolomics

de Raad, M., Fischer, C. R., & Northen, T. R. (2015) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2015.10.012 · Cited by 73 · see citing works

Constant-Distance Mode Nanospray Desorption Electrospray Ionization Mass Spectrometry Imaging of Biological Samples with Complex Topography

Nguyen, S., Liyu, A. V., Chu, R., Anderton, C., & Laskin, J. (2016) · Analytical Chemistry · doi:10.1021/acs.analchem.6b03293 · Cited by 73 · see citing works

Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry

Oetjen, J., Veselkov, K., Watrous, J. D., McKenzie, J. S., Becker, M. S., Hauberg‐Lotte, L., Kobarg, J. H., Strittmatter, N., Mróz, A., Hoffmann, F. S., et al. (2015) · GigaScience · doi:10.1186/s13742-015-0059-4 · Cited by 72 · see citing works

Molecular and chemical dialogues in bacteria-protozoa interactions

Song, C., Mazzola, M., Cheng, X., Oetjen, J., Alexandrov, T., Dorrestein, P. C., Watrous, J. D., van der Voort, M., & Raaijmakers, J. M. (2015) · Scientific Reports · doi:10.1038/srep12837 · Cited by 70 · see citing works

Emerging mass spectrometry techniques for the direct analysis of microbial colonies

Fang, J., & Dorrestein, P. C. (2014) · Current Opinion in Microbiology · doi:10.1016/j.mib.2014.06.014 · Cited by 69 · see citing works

Profiling of Microbial Colonies for High-Throughput Engineering of Multistep Enzymatic Reactions via Optically Guided Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry

Si, T., Li, B., Comi, T. J., Wu, Y., Hu, P., Wu, Y., Min, Y., Mitchell, D. A., Zhao, H., & Sweedler, J. V. (2017) · Journal of the American Chemical Society · doi:10.1021/jacs.7b04641 · Cited by 69 · see citing works

In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids

Schleyer, G., Shahaf, N., Ziv, C., Dong, Y., Meoded, R. A., Helfrich, E. J. N., Schatz, D., Rosenwasser, S., Rogachev, I., Aharoni, A., et al. (2019) · Nature Microbiology · doi:10.1038/s41564-018-0336-y · Cited by 69 · see citing works

Mass Spectrometry Imaging in Microbiology

Zou, Y., & Li, B. (2023) · Royal Society of Chemistry eBooks · doi:10.1039/bk9781837670338-00234

Mass Spectrometry Imaging of Complex Microbial Communities

Dunham, S. J. B., Ellis, J. F., Li, B., & Sweedler, J. V. (2016) · Accounts of Chemical Research · doi:10.1021/acs.accounts.6b00503 · Cited by 166 · see citing works

Imaging mass spectrometry for metabolites: technical progress, multimodal imaging, and biological interactions

Ho, Y.-N., Shu, L., & Yang, Y. (2017) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.1387 · Cited by 56 · see citing works

Mass Spectrometry Imaging of Microbes

Yang, H., Goodlett, D. R., Ernst, R. K., & Scott, A. J. (2020) · Research Publications (Maastricht University) · doi:10.5478/msl.2020.11.3.41 · Cited by 3 · see citing works

Fundamentals of imaging mass spectrometry

Shrestha, B. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-818998-6.00014-0