Cited by 2Cell death mechanisms and regulationMitochondrial Function and PathologyPhotoreceptor and optogenetics research

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

Optogenetic engineering of BAX to control mitochondrial permeabilization and attenuate apoptosis in cells

Open access
Lee, Dain, Bae, Hyunjun, Oh, Dongwoo, Kim, Minseop, Kim, Ju-Hee, Ahn, Jinchul, Kang, Seok-Hyeon, You, Seo-Hee, Kim, Dong-Hwee, Oh, Hyun Jeong, Heo, Won Do, Chung, Seok·2025·Experimental & Molecular Medicine

Published version of a preprint

Abstract

Although considerable research has focused on enhancing the apoptotic function of BAX for several decades, inhibition of its functionality remains relatively underexplored, despite intensive BAX activation occurring in various neurodegenerative diseases. Here we present a protein engineering approach to modulate BAX integration into the mitochondrial outer membrane, establishing a tunable strategy for antiapoptosis. Utilizing optogenetic methods that employ cryptochrome 2 and its binding partner cryptochrome-interacting basic helix loop helix 1, we achieved precise spatial control over BAX localization, a critical determinant of its function. Our results demonstrate that the engineered BAX variant is effectively incapacitated in its apoptotic function while also modulating endogenous BAX activity to enhance cellular resistance to apoptosis. These findings not only advance our understanding of BAX regulation but also offer promising prospects for the development of therapeutic strategies against apoptosis-related diseases.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s12276-025-01605-y

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Show all 3 references

Research works printed but not linked: 44

  1. Cory, S. & Adams, J. M. The Bcl2 family: regulators of the cellular life-or-death switch. Nat. Rev. Cancer 2, 647–656 (2002). · DOI · Paper page
  2. Cosentino, K. & García-Sáez, A. J. Bax and Bak pores: are we closing the circle?. Trends Cell Biol. 27, 266–275 (2017). · DOI
  3. Gavathiotis, E., Reyna, D. E., Davis, M. L., Bird, G. H. & Walensky, L. D. BH3-triggered structural reorganization drives the activation of proapoptotic BAX. Mol. Cell 40, 481–492 (2010). · DOI · Paper page
  4. Annis, M. G. et al. Bax forms multispanning monomers that oligomerize to permeabilize membranes during apoptosis. EMBO J. 24, 2096–2103 (2005). · DOI
  5. Suzuki, M., Youle, R. J. & Tjandra, N. Structure of Bax. Cell 103, 645–654 (2000). · DOI
  6. Peña-Blanco, A. & García-Sáez, A. J. Bax, Bak and beyond—mitochondrial performance in apoptosis. FEBS J. 285, 416–431 (2018). · DOI
  7. Bagci, E. Z., Vodovotz, Y., Billiar, T. R., Ermentrout, G. B. & Bahar, I. Bistability in apoptosis: roles of Bax, Bcl-2, and mitochondrial permeability transition pores. Biophys J. 90, 1546–1559 (2006). · DOI
  8. Tan, C. et al. Auto-activation of the apoptosis protein Bax increases mitochondrial membrane permeability and is inhibited by Bcl-2. J. Biol. Chem. 281, 14764–14775 (2006). · DOI
  9. Teles, A. V. F. F. et al. Increase in bax expression and apoptosis are associated in Huntington’s disease progression. Neurosci. Lett. 438, 59–63 (2008). · DOI
  10. Yin, C., Knudson, C. M., Korsmeyer, S. J. & Dyke, T. Van. Bax suppresses tumorigenesis and stimulates apoptosis in vivo. Nature 385, 637–640 (1997). · DOI
  11. MacGibbon, G. A. et al. Bax expression in mammalian neurons undergoing apoptosis, and in Alzheimer’s disease hippocampus. Brain Res. 750, 223–234 (1997). · DOI
  12. Aggarwal, S. & Gupta, S. Increased apoptosis of T cell subsets in aging humans: altered expression of Fas (CD95), Fas ligand, Bcl-2, and Bax. J. Immunol. 160, 1627–1637 (1998). · DOI
  13. Takeuchi, O. et al. Essential role of BAX,BAK in B cell homeostasis and prevention of autoimmune disease. Proc. Natl Acad. Sci. USA 102, 11272–11277 (2005). · DOI
  14. Lee, Y. & Gustafsson, ÅB. Role of apoptosis in cardiovascular disease. Apoptosis 14, 536–548 (2009). · DOI
  15. Kim, N.-H. & Kang, P. M. Apoptosis in cardiovascular diseases: mechanism and clinical implications. Korean Circ. J. 40, 299 (2010). · DOI
  16. Carneiro, B. A. & El-Deiry, W. S. Targeting apoptosis in cancer therapy. Nat. Rev. Clin. Oncol. 17, 395–417 (2020). · DOI
  17. Liu, Z. et al. Direct activation of bax protein for cancer therapy. Med. Res. Rev. 36, 313–341 (2016). · DOI
  18. Zhang, L., Yu, J., Park, B. H., Kinzler, K. W. & Vogelstein, B. Role of BAX in the apoptotic response to anticancer agents. Science 290, 989–992 (2000). · DOI · Paper page
  19. Jenner, P. & Warren Olanow, C. Understanding cell death in Parkinson's disease. Ann. Neurol 44, S72–S84 (1998). · DOI
  20. Moujalled, D., Strasser, A. & Liddell, J. R. Molecular mechanisms of cell death in neurological diseases. Cell Death Differ. 28, 2029–2044 (2021). · DOI · Paper page
  21. Emiliani, V. et al. Optogenetics for light control of biological systems. Nat. Rev. Methods Primers 2, 55 (2022). · DOI
  22. Duan, L. et al. Understanding CRY2 interactions for optical control of intracellular signaling. Nat. Commun. 8, 547 (2017). · DOI
  23. Che, D. L., Duan, L., Zhang, K. & Cui, B. The dual characteristics of light-induced cryptochrome 2, homo-oligomerization and heterodimerization, for optogenetic manipulation in mammalian cells. ACS Synth. Biol. 4, 1124–1135 (2015). · DOI
  24. Godwin, W. C., Hoffmann, G. F., Gray, T. J. & Hughes, R. M. Imaging of morphological and biochemical hallmarks of apoptosis with optimized optogenetic tools. J. Biol. Chem. 294, 16918–16929 (2019). · DOI
  25. Gavathiotis, E. et al. BAX activation is initiated at a novel interaction site. Nature 455, 1076–1081 (2008). · DOI · Paper page
  26. Garner, T. P. et al. An autoinhibited dimeric form of BAX regulates the BAX activation pathway. Mol. Cell 63, 485–497 (2016). · DOI · Paper page
  27. Hughes, R. M. et al. Optogenetic apoptosis: light-triggered cell death. Angewandte Chemie Int. Ed. 54, 12064–12068 (2015). · DOI
  28. Mirdita, M. et al. ColabFold: making protein folding accessible to all. Nat Methods 19, 679–682 (2022). · DOI · Paper page
  29. Baliga, B. & Kumar, S. Apaf-1/cytochrome c apoptosome: an essential initiatorof caspase activation or just a sideshow?. Cell Death Differ. 10, 16–18 (2003). · DOI
  30. Youle, R. J. & Karbowski, M. Mitochondrial fission in apoptosis. Nat. Rev. Mol. Cell Biol. 6, 657–663 (2005). · DOI
  31. Doonan, F. & Cotter, T. G. Morphological assessment of apoptosis. Methods 44, 200–204 (2008). · DOI
  32. Ma, L. et al. Structural insights into the photoactivation of Arabidopsis CRY2. Nat. Plants 6, 1432–1438 (2020). · DOI
  33. Hauseman, Z. J. et al. Homogeneous oligomers of pro-apoptotic BAX reveal structural determinants of mitochondrial membrane permeabilization. Mol. Cell 79, 68–83.e7 (2020). · DOI
  34. Nascimento, L. do, Nicoletti, N. F., Peletti-Figueiró, M., Marinowic, D. & Falavigna, A. Hyaluronic acid in vitro response: viability and proliferation profile of human chondrocytes in 3D-based culture. Cartilage 13, 1077S–1087S (2021). · DOI
  35. Shamseldin, H. E. et al. NUP214 deficiency causes severe encephalopathy and microcephaly in humans. Hum. Genet. 138, 221–229 (2019). · DOI
  36. Garcia, D. A., Powers, A. F., Bell, T. A., Guo, S. & Aghajan, M. Antisense oligonucleotide-mediated silencing of mitochondrial fusion and fission factors modulates mitochondrial dynamics and rescues mitochondrial dysfunction. Nucleic Acid Ther. 32, 51–65 (2022). · DOI
  37. Westrate, L. M., Drocco, J. A., Martin, K. R., Hlavacek, W. S. & MacKeigan, J. P. Mitochondrial morphological features are associated with fission and fusion events. PLoS ONE 9, e95265 (2014). · DOI
  38. Zhou, L. & Chang, D. C. Dynamics and structure of the Bax–Bak complex responsible for releasing mitochondrial proteins during apoptosis. J. Cell Sci. 121, 2186–2196 (2008). · DOI
  39. Nunnari, J. et al. Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA. Mol. Biol. Cell 8, 1233–1242 (1997). · DOI
  40. Al Ojaimi, M., Salah, A. & El-Hattab, A. Mitochondrial fission and fusion: molecular mechanisms, biological functions, and related disorders. Membranes 12, 893 (2022). · DOI
  41. Fang, C. et al. Natural products: potential treatments for cisplatin-induced nephrotoxicity. Acta Pharmacol. Sin. 42, 1951–1969 (2021). · DOI
  42. Obashi, K. & Okabe, S. Regulation of mitochondrial dynamics and distribution by synapse position and neuronal activity in the axon. Eur. J. Neurosci. 38, 2350–2363 (2013). · DOI
  43. Karbowski, M. et al. Spatial and temporal association of Bax with mitochondrial fission sites, DRP1, and Mfn2 during apoptosis. J Cell Biol 159, 931–938 (2002). · DOI · Paper page
  44. Montessuit, S. et al. Membrane remodeling induced by the dynamin-related protein DRP1 stimulates Bax oligomerization. Cell 142, 889–901 (2010). · DOI

Metadata

Authors
Lee, D., Bae, H., Oh, D., Kim, M., Kim, J.-H., Ahn, J., Kang, S.-H., You, S.-H., Kim, D.-H., Oh, H. J., Heo, W. D., & Chung, S.
Affiliations
  • Korea University (KR)
  • Korea Advanced Institute of Science and Technology (KR)
Corresponding author
Chung, Seok
Venue
Experimental & Molecular Medicine
Published
2025-12-26
Volume
57
Issue
12
Pages
2972-2984
ISSN
  • 1226-3613 (ISSN-L)
  • 2092-6413
OpenAlex
W7117321027
Cited by
2
References
3
Citations by year
2026: 2
FWCI
0.60
Type
journal article
Language
en
Open access
Locations
  • Experimental & Molecular Medicine (publishedVersion, cc-by)
  • Research Square (acceptedVersion, cc-by)
  • PubMed (publishedVersion)
  • PubMed Central (publishedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Research Foundation
  • National Research Foundation of Korea (RS‐2024‐00440577)
  • Ministry of Science and ICT, South Korea (20012378, RS-2024-00440577)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cell death mechanisms and regulation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Photoreceptor and optogenetics research
Keywords
Bax, optogenetics, CRY2, CIB1, mitochondrial membrane permeabilization, apoptosis, apoptosis inhibition, protein engineering, mitochondrial outer membrane, neurodegenerative diseases
MeSH terms
Humans, Mitochondria, Permeability, Protein Engineering, Apoptosis, bcl-2-Associated X Protein, Mitochondrial Membranes, Cryptochromes, Optogenetics

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review