Cited by 56Genetics and Neurodevelopmental DisordersPluripotent Stem Cells ResearchNeuroscience and Neuropharmacology Research

Novel fragile X syndrome 2D and 3D brain models based on human isogenic FMRP-KO iPSCs.

Open access
Brighi, Carlo, Salaris, Federico, Soloperto, Alessandro, Cordella, Federica, Ghirga, Silvia, de Turris, Valeria, Rosito, Maria, Porceddu, Pier Francesca +4 more·2021·Cell Death & Disease

Published version of a preprint

Abstract

Fragile X syndrome (FXS) is a neurodevelopmental disorder, characterized by intellectual disability and sensory deficits, caused by epigenetic silencing of the FMR1 gene and subsequent loss of its protein product, fragile X mental retardation protein (FMRP). Delays in synaptic and neuronal development in the cortex have been reported in FXS mouse models; however, the main goal of translating lab research into pharmacological treatments in clinical trials has been so far largely unsuccessful, leaving FXS a still incurable disease. Here, we generated 2D and 3D in vitro human FXS model systems based on isogenic FMR1 knock-out mutant and wild-type human induced pluripotent stem cell (hiPSC) lines. Phenotypical and functional characterization of cortical neurons derived from FMRP-deficient hiPSCs display altered gene expression and impaired differentiation when compared with the healthy counterpart. FXS cortical cultures show an increased number of GFAP positive cells, likely astrocytes, increased spontaneous network activity, and depolarizing GABAergic transmission. Cortical brain organoid models show an increased number of glial cells, and bigger organoid size. Our findings demonstrate that FMRP is required to correctly support neuronal and glial cell proliferation, and to set the correct excitation/inhibition ratio in human brain development.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41419-021-03776-8

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • In a human FMR1 KO iPSC cortical model, KO NPCs produced larger organoids and displayed increased GFAP expression compared with isogenic controls.

    “In a separate human FMR1 KO iPSC cortical model, KO NPCs produced larger organoids and displayed increased glial fibrillary acidic protein (GFAP) expression when compared with isogenic controls (Brighi et al., 2021).”

    From Astrocytes in fragile X syndrome (2024) · cites this paper as Brighi et al., 2021

    The Results section, ‘Development of a brain organoid-based FXS 3D disease model,’ reports that FMRP-KO organoids were larger and had increased GFAP staining compared with isogenic FMRP-WT organoids. However, the Methods section, ‘Generation of self-assembled brain organoids,’ says the organoids were generated from dissociated hiPSCs, not from KO neural progenitor cells (NPCs); the GFAP finding is reported for organoids, not specifically for NPCs. (LLM, conf=0.86)

    Experimental — accuracy not yet measured
  • Increased GFAP expression is found in a human FMR1 KO iPSC cortical organoid model.

    “Increased GFAP expression is also found in a human FMR1 KO iPSC cortical organoid model (Brighi et al., 2021).”

    From Astrocytes in fragile X syndrome (2024) · cites this paper as Brighi et al., 2021

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 56

  1. [1]Martin JP Bell J A pedigree of mental defect showing sex-linkage J. Neurol. Neurosurg. Psychiatry 1943 6 154 157 10.1136/jnnp.6.3-4.154 PMC1090429 21611430 · DOI · Paper page
  2. [2]Hagerman RJ Hagerman PJ The fragile X premutation: into the phenotypic fold Curr. Opin. Genet. Dev. 2002 12 278 283 10.1016/S0959-437X(02)00299-X 12076670 · DOI
  3. [3]Hunter J Epidemiology of fragile X syndrome: a systematic review and meta-analysis Am. J. Med. Genet. Part A 2014 164 1648 1658 10.1002/ajmg.a.36511 24700618 · DOI
  4. [6]Antar LN Dictenberg JB Plociniak M Afroz R Bassell GJ Localization of FMRP-associated mRNA granules and requirement of microtubules for activity-dependent trafficking in hippocampal neurons Genes Brain Behav. 2005 4 350 359 10.1111/j.1601-183X.2005.00128.x 16098134 · DOI
  5. [8]Contractor A Klyachko VA Portera-Cailliau C Altered neuronal and circuit excitability in fragile X syndrome Neuron 2015 87 699 715 10.1016/j.neuron.2015.06.017 26291156 PMC4545495 · DOI
  6. [9]Banerjee A Ifrim MF Valdez AN Raj N Bassell GJ Aberrant RNA translation in fragile X syndrome: from FMRP mechanisms to emerging therapeutic strategies Brain Res. 2018 1693 24 36 10.1016/j.brainres.2018.04.008 29653083 PMC7377270 · DOI
  7. [10]Till SM Altered maturation of the primary somatosensory cortex in a mouse model of fragile X syndrome Hum. Mol. Genet. 2012 21 2143 2156 10.1093/hmg/dds030 22328088 · DOI · Paper page
  8. [11]Kooy RF Transgenic mouse model for the fragile X syndrome Am. J. Med. Genet. 1996 64 241 245 10.1002/(SICI)1096-8628(19960809)64:2<241::AID-AJMG1>3.0.CO;2-X 8844056 · DOI
  9. [12]Li Y Zhao X Concise review: fragile X proteins in stem cell maintenance and differentiation Stem Cells 2014 32 1724 1733 10.1002/stem.1698 24648324 PMC4255947 · DOI
  10. [13]Liu-Yesucevitz L Local RNA translation at the synapse and in disease J. Neurosci. 2011 31 16086 16093 10.1523/JNEUROSCI.4105-11.2011 22072660 PMC3241995 · DOI
  11. [16]Halevy T Czech C Benvenisty N Molecular mechanisms regulating the defects in fragile x syndrome neurons derived from human pluripotent stem cells Stem Cell Rep. 2015 4 37 46 10.1016/j.stemcr.2014.10.015 PMC4297868 25483109 · DOI
  12. [17]Vershkov D FMR1 reactivating treatments in fragile X iPSC-derived neural progenitors in vitro and in vivo Cell Rep. 2019 26 2531 2539 10.1016/j.celrep.2019.02.026 30840878 · DOI
  13. [18]Sandoe J Eggan K Opportunities and challenges of pluripotent stem cell neurodegenerative disease models Nat. Neurosci. 2013 16 780 789 10.1038/nn.3425 23799470 · DOI
  14. [20]Schöndorf D. C., et al. IPSC-derived neurons from GBA1-associated Parkinson’s disease patients show autophagic defects and impaired calcium homeostasis. Nat. Commun. 10.1038/ncomms5028 (2014). 24905578 · DOI
  15. [21]Xu X Reversal of phenotypic abnormalities by CRISPR/Cas9-mediated gene correction in Huntington disease patient-derived induced pluripotent stem cells Stem Cell Rep. 2017 8 619 633 10.1016/j.stemcr.2017.01.022 PMC5355646 28238795 · DOI
  16. [22]Hong YJ Do JT Neural lineage differentiation from pluripotent stem cells to mimic human brain tissues Front. Bioeng. Biotechnol. 2019 7 1 17. 10.3389/fbioe.2019.00400 31867324 PMC6908493 · DOI
  17. [23]Thomas CH Collier JH Sfeir CS Healy KE Engineering gene expression and protein synthesis by modulation of nuclear shape Proc. Natl Acad. Sci. USA 2002 99 1972 1977 10.1073/pnas.032668799 11842191 PMC122304 · DOI
  18. [24]Vergani L Grattarola M Nicolini C Modifications of chromatin structure and gene expression following induced alterations of cellular shape Int. J. Biochem. Cell Biol. 2004 36 1447 1461 10.1016/j.biocel.2003.11.015 15147724 · DOI
  19. [25]Wrzesinski K Fey S From 2D to 3D—a new dimension for modelling the effect of natural products on human tissue Curr. Pharm. Des. 2015 21 5605 5616 10.2174/1381612821666151002114227 26429710 · DOI
  20. [26]Knight E Przyborski S Advances in 3D cell culture technologies enabling tissue-like structures to be created in vitro J. Anat. 2015 227 746 756 10.1111/joa.12257 25411113 PMC4694114 · DOI
  21. [28]Simian, M. & Bissell, M. J. Organoids: a historical perspective of thinking in three dimensions. J. Cell Biol.216, 31–40 (2017). PMC5223613 28031422
  22. [29]Kelava I Lancaster MA Dishing out mini-brains: current progress and future prospects in brain organoid research Dev. Biol. 2016 420 199 209 10.1016/j.ydbio.2016.06.037 27402594 PMC5161139 · DOI
  23. [30]Mariani J FOXG1-dependent dysregulation of GABA/glutamate neuron differentiation in autism spectrum disorders Cell 2015 162 375 390 10.1016/j.cell.2015.06.034 26186191 PMC4519016 · DOI · Paper page
  24. [31]Wang P CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells Mol. Autism 2017 8 1 17. 10.1186/s13229-016-0115-7 28321286 PMC5357816 · DOI
  25. [32]Lenzi J ALS mutant FUS proteins are recruited into stress granules in induced pluripotent stem cell-derived motoneurons Dis. Model Mech. 2015 8 755 766 10.1242/dmm.020099 26035390 PMC4486861 · DOI
  26. [33]Shi Y Kirwan P Livesey FJ Directed differentiation of human pluripotent stem cells to cerebral cortex neurons and neural networks Nat. Protoc. 2012 7 1836 1846 10.1038/nprot.2012.116 22976355 · DOI · Paper page
  27. [34]Salaris F 3D bioprinted human cortical neural constructs derived from induced pluripotent stem cells J. Clin. Med. 2019 8 1595 10.3390/jcm8101595 31581732 PMC6832547 · DOI
  28. [35]Ghirga S Optonongenetic enhancement of activity in primary cortical neurons J. Opt. Soc. Am. A 2020 37 643 10.1364/JOSAA.385832 32400549 · DOI
  29. [36]Sunamura N Iwashita S Enomoto K Kadoshima T Isono F Loss of the fragile X mental retardation protein causes aberrant differentiation in human neural progenitor cells Sci. Rep. 2018 8 1 13. 10.1038/s41598-018-30025-4 30072797 PMC6072755 · DOI
  30. [37]Lee FHF Lai TKY Su P Liu F Altered cortical cytoarchitecture in the Fmr1 knockout mouse Mol. Brain 2019 12 1 12. 10.1186/s13041-018-0417-0 31200759 PMC6570929 · DOI
  31. [38]Bülow P Murphy TJ Bassell GJ Wenner P Homeostatic intrinsic plasticity is functionally altered in Fmr1 KO cortical neurons Cell Rep. 2019 26 1378 1388 10.1016/j.celrep.2019.01.035 30726724 PMC6443253 · DOI
  32. [39]Achuta, V. S., et al. Functional changes of AMPA responses in human induced pluripotent stem cell–derived neural progenitors in fragile x syndrome. Sci. Signal10.1126/scisignal.aan8784 (2018). 29339535
  33. [40]Danesi C Increased calcium influx through L-type calcium channels in human and mouse neural progenitors lacking fragile X mental retardation protein Stem Cell Rep. 2018 11 1449 1461 10.1016/j.stemcr.2018.11.003 PMC6294261 30503263 · DOI
  34. [41]Achuta VS Metabotropic glutamate receptor 5 responses dictate differentiation of neural progenitors to NMDA-responsive cells in fragile X syndrome Dev. Neurobiol. 2017 77 438 453 10.1002/dneu.22419 27411166 · DOI
  35. [42]Morin-Parent F Champigny C Lacroix A Corbin F Lepage J-F Hyperexcitability and impaired intracortical inhibition in patients with fragile-X syndrome Transl. Psychiatry 2019 9 312 10.1038/s41398-019-0650-z 31748507 PMC6868148 · DOI
  36. [43]Braat S The GABAA receptor is an FMRP target with therapeutic potential in fragile X syndrome Cell Cycle 2015 14 2985 2995 10.4161/15384101.2014.989114 25790165 PMC4827888 · DOI
  37. [44]Sabanov V Impaired GABAergic inhibition in the hippocampus of Fmr1 knockout mice Neuropharmacology 2017 116 71 81 10.1016/j.neuropharm.2016.12.010 28012946 · DOI
  38. [45]Kang JY Deficits in the activity of presynaptic-aminobutyric acid type B receptors contribute to altered neuronal excitability in fragile X syndrome J. Biol. Chem. 2017 292 6621 6632 10.1074/jbc.M116.772541 28213518 PMC5399111 · DOI
  39. [46]Telias M Segal M Telias M Immature responses to GABA in fragile X neurons derived from human embryonic stem cells Front. Cell Neurosci. 2016 10 1 9 10.3389/fncel.2016.00121 27242433 PMC4864171 · DOI
  40. [47]Telias M Pharmacological treatments for fragile X syndrome based on synaptic dysfunction Curr. Pharm. Des. 2019 25 4394 4404 10.2174/1381612825666191102165206 31682210 · DOI
  41. [48]Cellot G Cherubini E Functional role of ambient GABA in refining neuronal circuits early in postnatal development Front. Neural Circuits 2013 7 1 9 10.3389/fncir.2013.00136 23964205 PMC3741556 · DOI
  42. [49]Palma E Phosphatase inhibitors remove the run-down of γ-aminobutyric acid type A receptors in the human epileptic brain Proc. Natl Acad. Sci. USA 2004 101 10183 10188 10.1073/pnas.0403683101 15218107 PMC454185 · DOI
  43. [50]Di Angelantonio S A role for intracellular zinc in glioma alteration of neuronal chloride equilibrium Cell Death Dis. 2014 5 e1501 e1510 10.1038/cddis.2014.437 25356870 PMC4237258 · DOI
  44. [51]He Q Interneuron- and GABAA receptor-specific inhibitory synaptic plasticity in cerebellar Purkinje cells Nat. Commun. 2015 6 1 13. PMC4518301 26179122
  45. [52]Wang L., et al. Imbalance between glutamate and GABA in Fmr1 knockout astrocytes influences neuronal development. Genes10.3390/genes7080045 (2016). PMC4999833 27517961
  46. [53]Jacobs S Nathwani M Doering LC Fragile X astrocytes induce developmental delays in dendrite maturation and synaptic protein expression BMC Neurosci. 2010 11 132 10.1186/1471-2202-11-132 20955577 PMC2970604 · DOI
  47. [54]Jacobs S Cheng C Doering LC Hippocampal neuronal subtypes develop abnormal dendritic arbors in the presence of fragile X astrocytes Neuroscience 2016 324 202 217 10.1016/j.neuroscience.2016.03.011 26968765 · DOI
  48. [55]Cheng, C., Sourial, M. & Doering, L. C. Astrocytes and developmental plasticity in fragile X. Neural Plast.10.1155/2012/197491 (2012). PMC3403619 22848847 · DOI · Paper page
  49. [56]Guo W Inhibition of GSK3β improves hippocampusdependent learning and rescues neurogenesis in a mouse model of fragile X syndrome Hum. Mol. Genet. 2012 21 681 691 10.1093/hmg/ddr501 22048960 PMC3259018 · DOI
  50. [57]Jin YH Kim H Oh M Ki H Kim K Regulation of Notch1/NICD and Hes1 expressions by GSK-3α/β Mol. Cells 2009 27 15 19 10.1007/s10059-009-0001-7 19214430 · DOI
  51. [58]Morrison SJ Transient notch activation initiates an irreversible switch from neurogenesis to gliogenesis by Neural Crest Stem Cells (NCSCs). Stem cells self-renew and can generate one or more classes of neurons, glia, and myofibroblasts (also known as smooth muscle cells) Cell 2000 101 499 510 10.1016/S0092-8674(00)80860-0 10850492 · DOI
  52. [59]De Santis R FUS mutant human motoneurons display altered transcriptome and microRNA pathways with implications for ALS pathogenesis Stem Cell Rep. 2017 9 1450 1462 10.1016/j.stemcr.2017.09.004 PMC5830977 28988989 · DOI · Paper page
  53. [60]Lancaster MA Knoblich JA Generation of cerebral organoids from human pluripotent stem cells Nat. Protoc. 2014 9 2329 2340 10.1038/nprot.2014.158 25188634 PMC4160653 · DOI
  54. [61]Palazzolo G., et al. Fast wide-volume functional imaging of engineered in vitro brain tissues. Sci Rep.10.1038/s41598-017-08979-8 (2017). PMC5561227 28819205 · DOI
  55. [62]Grewe BF Langer D Kasper H Kampa BM Helmchen F High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision Nat. Methods 2010 7 399 405 10.1038/nmeth.1453 20400966 · DOI
  56. [63]Di Angelantonio S Nistri A Calibration of agonist concentrations applied by pressure pulses or via rapid solution exchanger J. Neurosci. Methods 2001 110 155 161 10.1016/S0165-0270(01)00437-X 11564536 · DOI

Cited by

Sorted by citations

Authors
Brighi, C., Salaris, F., Soloperto, A., Cordella, F., Ghirga, S., de Turris, V., Rosito, M., Porceddu, P. F., D’Antoni, C., Reggiani, A., Rosa, A., & Di Angelantonio, S.
Affiliations
Italian Institute of Technology (IT)
Corresponding author
Rosa, Alessandro
Venue
Cell Death & Disease
Published
2021-05-15
Volume
12
Issue
5
Pages
498-498
ISSN
2041-4889 (ISSN-L)
OpenAlex
W3160678528
Cited by
56
References
9
Citations by year
2026: 7 · 2025: 7 · 2024: 13 · 2023: 11 · 2022: 11 · 2021: 6 · 2020: 1
FWCI
5.80
Type
journal article
Language
en
Open access
Locations
  • Cell Death and Disease (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • IRIS Research product catalog (Sapienza University of Rome) (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Istituto Italiano di Tecnologia
  • Regione Lazio
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
Keywords
fragile X syndrome, FMRP, induced pluripotent stem cells, cortical neurons, astrocytes, GABAergic neurotransmission, excitation-inhibition balance, neuronal differentiation, glial cell proliferation, brain development, isogenic cell lines
MeSH terms
Brain, Cell Differentiation, Fragile X Syndrome, Humans, Fragile X Messenger Ribonucleoprotein 1, Fragile X Mental Retardation Protein, Induced Pluripotent Stem Cells

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review