The DOI matches its Crossref record; 38 of the 38 references it cites were found in a registry or an index.
A mosaic monoploid reference sequence for the highly complex genome of sugarcane
Open accessAbstract
Sugarcane (Saccharum spp.) is a major crop for sugar and bioenergy production. Its highly polyploid, aneuploid, heterozygous, and interspecific genome poses major challenges for producing a reference sequence. We exploited colinearity with sorghum to produce a BAC-based monoploid genome sequence of sugarcane. A minimum tiling path of 4660 sugarcane BAC that best covers the gene-rich part of the sorghum genome was selected based on whole-genome profiling, sequenced, and assembled in a 382-Mb single tiling path of a high-quality sequence. A total of 25,316 protein-coding gene models are predicted, 17% of which display no colinearity with their sorghum orthologs. We show that the two species, S. officinarum and S. spontaneum, involved in modern cultivars differ by their transposable elements and by a few large chromosomal rearrangements, explaining their distinct genome size and distinct basic chromosome numbers while also suggesting that polyploidization arose in both lineages after their divergence.
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Self-citationMartins, A. A., da Silva, M. F., & Pinto, L. R. (2020) · 3 Biotech · doi:10.1007/s13205-020-02257-7 · Cited by 6
Metadata
- Authors
- Garsmeur, O., Droc, G., Antonise, R., Grimwood, J., Potier, B., Aitken, K., Jenkins, J., Martin, G., Charron, C., Hervouet, C., Costet, L., Yahiaoui, N., Healey, A., Sims, D., Cherukuri, Y., Sreedasyam, A., Kilian, A., Chan, A., Van Sluys, M.-A., Swaminathan, K., Town, C., Bergès, H., Simmons, B., Glaszmann, J. C., van der Vossen, E., Henry, R., Schmutz, J., & D’Hont, A.
- Venue
- Nature Communications
- Published
- 2018-07-06
- Volume
- 9
- Issue
- 1
- Pages
- 2638-2638
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2810624951
- Cited by
- 452
- References
- 38
- FWCI
- 40.86
- Type
- journal article
- Language
- en
- Open access
- gold
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- Garsmeur, O., Droc, G., Antonise, R., Grimwood, J., Potier, B., Aitken, K., Jenkins, J., Martin, G., Charron, C., Hervouet, C., Costet, L., Yahiaoui, N., Healey, A., Sims, D., Cherukuri, Y., Sreedasyam, A., Kilian, A., Chan, A., Van Sluys, M.-A., . . . D’Hont, A. (2018). A mosaic monoploid reference sequence for the highly complex genome of sugarcane. Nature Communications. https://doi.org/10.1038/s41467-018-05051-5
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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