Structural optimization of siRNA conjugates for albumin binding achieves effective MCL1-directed cancer therapy
Open accessAbstract
The high potential of siRNAs to silence oncogenic drivers remains largely untapped due to the challenges of tumor cell delivery. Here, divalent lipid-conjugated siRNAs are optimized for in situ binding to albumin to improve pharmacokinetics and tumor delivery. Systematic variation of the siRNA conjugate structure reveals that the location of the linker branching site dictates tendency toward albumin association versus self-assembly, while the lipid hydrophobicity and reversibility of albumin binding also contribute to siRNA intracellular delivery. The lead structure increases tumor siRNA accumulation 12-fold in orthotopic triple negative breast cancer (TNBC) tumors over the parent siRNA. This structure achieves approximately 80% silencing of the anti-apoptotic oncogene MCL1 and yields better survival outcomes in three TNBC models than an MCL-1 small molecule inhibitor. These studies provide new structure-function insights on siRNA-lipid conjugate structures that are intravenously injected, associate in situ with serum albumin, and improve pharmacokinetics and tumor treatment efficacy.
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A hydrophilic linker helped offset the lipid hydrophobicity that promoted potent cellular entry.
“This prior work studied the effects of linker and lipid structure and revealed that a hydrophilic linker helped offset the lipid hydrophobicity that promoted potent cellular entry.”
From Elucidating brain transport pathways and cell type-dependent gene silencing of a durable lipid–siRNA conjugate administered into cerebrospinal fluid (2025) · cites this paper as [12]
L2-siRNA was optimized in the context of navigating systemic delivery to tumors.
“We recently developed a lipid–siRNA conjugate termed “L2-siRNA” that was optimized in the context of navigating systemic delivery to tumors [12].”
From Elucidating brain transport pathways and cell type-dependent gene silencing of a durable lipid–siRNA conjugate administered into cerebrospinal fluid (2025) · cites this paper as [12]
L2-siRNA exhibited balanced cell uptake and transport properties in serum, modulated by reversible shielding of the lipids due to albumin binding.
“The L2-siRNA conjugate exhibited balanced cell uptake and transport properties in serum, which was modulated by reversible shielding of the lipids due to albumin binding [12].”
From Elucidating brain transport pathways and cell type-dependent gene silencing of a durable lipid–siRNA conjugate administered into cerebrospinal fluid (2025) · cites this paper as [12]
L2-siRNA was optimized in the context of intravenous delivery for albumin hitchhiking toward delivery to tumors.
“We recently developed a lipid-siRNA conjugate termed “L2-siRNA” that was optimized in the context of intravenous delivery for albumin hitchhiking toward delivery to tumors.30”
From Lipid-siRNA conjugate accesses a perivascular transport mechanism and achieves widespread and durable knockdown in the central nervous system (2024) · cites this paper as [30]
Prior studies showed no evidence of systemic toxicity induced by L2-siRNA after intravenous injection.
“Consistent with prior studies showing no evidence of systemic toxicity induced by L2-siRNA after intravenous injection,30,46 we similarly did not observe changes in serum markers after ICV injection (Supplementary Fig. 14).”
From Lipid-siRNA conjugate accesses a perivascular transport mechanism and achieves widespread and durable knockdown in the central nervous system (2024) · cites this paper as [30]
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Sorets, A. G., Schwensen, K. R., Francini, N., Kjar, A., Abdulrahman, A. M., Shostak, A., Katdare, K. A., Schoch, K. M., Cowell, R. P., Park, J. C., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf600 · Cited by 6 · see citing works
“Consistent with prior studies showing no evidence of systemic toxicity induced by L2-siRNA after intravenous injection [ 12 ,42 ], we similarly did not observe changes in serum markers after ICV injection in mice or intrathecal injection in rats ( Supplementary Figs S14 and S15 ).”
Self-citationSorets, A., Schwensen, K., Francini, N., Kjar, A., Abdulrahman, A., Shostak, A., Katdare, K., Schoch, K., Cowell, R., Park, J., et al. (2024) · doi:10.1101/2024.06.09.598079 · Cited by 4 · see citing works
Self-citation
- Authors
- Hoogenboezem, E. N., Patel, S. S., Lo, J. H., Cavnar, A. B., Babb, L. M., Francini, N., Gbur, E. F., Patil, P., Colazo, J. M., Michell, D. L., Sanchez, V. M., McCune, J. T., Ma, J., DeJulius, C. R., Lee, L. H., Rosch, J. C., Allen, R. M., Stokes, L. D., Hill, J. L., Vickers, K. C., Cook, R. S., & Duvall, C. L.
- Affiliations
- Vanderbilt University (US)
- Vanderbilt University Medical Center (US)
- Corresponding author
- Duvall, Craig L.
- ORCID
- Hoogenboezem, Ella N.
- Patel, Shrusti S.
- Lo, Justin H.
- Cavnar, Ashley B.
- Babb, Lauren M.
- Francini, Nora
- Gbur, Eva F.
- Patil, Prarthana
- Colazo, Juan M.
- Michell, Danielle L.
- Sanchez, Violeta M.
- McCune, Joshua T.
- Ma, Jinqi
- DeJulius, Carlisle R.
- Allen, Ryan M.
- Hill, Jordan L.
- Vickers, Kasey C.
- Cook, Rebecca S.
- Duvall, Craig L.
- Venue
- Nature Communications
- Published
- 2024-02-21
- Volume
- 15
- Issue
- 1
- Pages
- 1581-1581
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC10881965
- OpenAlex
- W4392004456
- Cited by
- 52
- References
- 7
- Citations by year
- 2026: 22 · 2025: 24 · 2024: 6
- FWCI
- 7.08
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- U.S. Department of Health & Human Services | National Institutes of Health (R01 CA224241, R01 EB019409, R01 CA260958, R21 AR078636, T32 CA217834, F32 CA268705)
- National Science Foundation (BMAT 1349604)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Physical Sciences › Materials Science › Biomaterials › Nanoparticle-Based Drug Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- siRNA conjugates, albumin binding, Mcl-1, triple-negative breast cancer, pharmacokinetics, intracellular delivery, RNA interference, intravenous injection
- MeSH terms
- Albumins, Antineoplastic Agents, Humans, Lipids, Gene Silencing, RNA, Small Interfering, Cell Line, Tumor, Myeloid Cell Leukemia Sequence 1 Protein, Triple Negative Breast Neoplasms
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