Cited by 172Artificial Intelligence in Healthcare and EducationMachine Learning in HealthcareTopic Modeling

The DOI matches its Crossref record; 55 of the 55 references it cites were found in a registry or an index; 7 of the 21 sources its claims cite were checked for support.

Large Language Models lack essential metacognition for reliable medical reasoning

Open access
Griot, Maxime, Hemptinne, Coralie, Vanderdonckt, Jean, Yuksel, Demet·2025·Nature Communications

Abstract

Large Language Models have demonstrated expert-level accuracy on medical board examinations, suggesting potential for clinical decision support systems. However, their metacognitive abilities, crucial for medical decision-making, remain largely unexplored. To address this gap, we developed MetaMedQA, a benchmark incorporating confidence scores and metacognitive tasks into multiple-choice medical questions. We evaluated twelve models on dimensions including confidence-based accuracy, missing answer recall, and unknown recall. Despite high accuracy on multiple-choice questions, our study revealed significant metacognitive deficiencies across all tested models. Models consistently failed to recognize their knowledge limitations and provided confident answers even when correct options were absent. In this work, we show that current models exhibit a critical disconnect between perceived and actual capabilities in medical reasoning, posing significant risks in clinical settings. Our findings emphasize the need for more robust evaluation frameworks that incorporate metacognitive abilities, essential for developing reliable Large Language Model enhanced clinical decision support systems. Large Language Models demonstrate expert-level accuracy in medical exams, supporting their potential inclusion in healthcare settings. Here, authors reveal that their metacognitive abilities are underexplored, showing significant gaps in recognizing knowledge limitations, difficulties in modulating their confidence, and challenges in identifying when a problem cannot be answered due to insufficient information.

Overview

AI snapshot

Written from the paper’s full text.

TL;DR

The paper introduces MetaMedQA, a modified MedQA-USMLE benchmark with confidence scoring and unanswerable/missing-answer tasks, and evaluates 12 LLMs on medical multiple-choice questions. It finds that despite high accuracy, models largely fail to recognize knowledge limits, rarely use low confidence, and almost never identify unknown or unanswerable questions.

Key findings

  • MetaMedQA contains 1,373 questions with six answer choices and one correct choice; it includes 100 fictional Glianorex questions, 55 manually identified malformed questions, and 125 modified questions.
  • Overall accuracy tracked model size and recency: GPT-4o-2024-05-13 reached 73.3% (SEM = 1.2%), Qwen2 72B 64.3% (SEM = 1.3%), Qwen2 7B 43.9% (SEM = 1.3%), and Yi 1.5 9B 29.6% (SEM = 1.2%).
  • Most models always assigned maximum confidence 5; only GPT-3.5-turbo-0125, GPT-4o-2024-05-13, and Qwen2-72B varied confidence. GPT-4o had high-confidence accuracy 83.2%, medium-confidence accuracy 45.9%, and low-confidence accuracy 16.7%.
  • Missing-answer recall was low: GPT-4o scored 46.1% (SEM = 4.7%) versus GPT-3.5-turbo-0125 at 11.3% (SEM = 2.9%). Unknown recall was near zero for most models, with GPT-4o at 3.7%, Meerkat 7B at 1.2%, and Yi 1.5 34B at 0.6%; prompt engineering raised GPT-4o unknown recall to 51.8% with the “role-full” prompt.

Methods

  • The authors created MetaMedQA from MedQA-USMLE by adding fictional questions, identifying malformed questions, and modifying selected questions, yielding 1,373 six-choice questions.
  • They evaluated 12 proprietary and open-weight models, including GPT-4o-2024-05-13, GPT-3.5-turbo-0125, Mixtral-8x7B, Mistral-7B, Yi-1.5-9B/34B, Llama-3-8B/70B, Qwen2-7B/72B, Meerkat-7B, and Internist-7B, using temperature 0 and constrained decoding via Guidance.
  • Main analyses covered overall accuracy, confidence-based accuracy, missing-answer recall, unknown recall, and prompt engineering on GPT-4o; statistical comparisons used one-way ANOVA with Tukey correction, and prompt comparisons used Fisher’s least significant difference test.

Limitations

  • The paper states that MedQA, even modified, may not capture real-world clinical complexity; multiple-choice questions cannot replicate nuanced clinical decision-making, and manual modifications/audits may introduce human error or interpretation bias.
  • The paper states that confidence scoring from 1 to 5 may not fully represent model certainty, the evaluated models were limited to those available as of June 2024, proprietary models limit insight into training data, and the reliance on Dual Process Theory may not fully represent clinical cognition; the work investigates System 1 thinking exclusively.
  • Evident from the text: unknown-recall analysis was severely limited because 9 of 12 models scored 0, making regression/correlation results hard to interpret; confidence analysis was limited to only three models that varied confidence, and prompt engineering was tested only on GPT-4o.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1038/s41467-024-55628-6

Cites

55 of 55 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Figures

Fig. 1 Flow chart description of the MetaMedQA dataset construction. Starting from the original MedQA and Glianorex English benchmarks we obtain a benchmark with 1096 questions retaining their original answers and respectively 115 questions and 162 questions for the “None of the above” and “I don’t know or cannot answer” choices.
Fig. 1 Flow chart description of the MetaMedQA dataset construction. Starting from the original MedQA and Glianorex English benchmarks we obtain a benchmark with 1096 questions retaining their original answers and respectively 115 questions and 162 questions for the “None of the above” and “I don’t know or cannot answer” choices.CC BY-NC-ND · PubMed Central
Fig. 2 Accuracy of models on the MetaMedQA benchmark. Results are presented as mean values +/− 95% CI (n = 1373). Representative statistical significance was determined using a one-way ANOVA with a Tukey correction for multiple comparisons and is indicated by asterisks above the brackets (* p < 0.05 and **** p < 0.0001; Yi 1.5 34b vs Meerkat 7b, p = 0.0142). Models of the same family share the same color. Source data are provided as a Source Data file.
Fig. 2 Accuracy of models on the MetaMedQA benchmark. Results are presented as mean values +/− 95% CI (n = 1373). Representative statistical significance was determined using a one-way ANOVA with a Tukey correction for multiple comparisons and is indicated by asterisks above the brackets (* p < 0.05 and **** p < 0.0001; Yi 1.5 34b vs Meerkat 7b, p = 0.0142). Models of the same family share the same color. Source data are provided as a Source Data file.CC BY-NC-ND · PubMed Central
Fig. 3 Recall of “None of the above” of models on the MetaMedQA benchmark, including the 95% confidence interval. Representative statistical significance was determined using a one-way ANOVA with a Tukey correction for multiple comparisons and is indicated by asterisks above the brackets (* p < 0.05 and **** p < 0.0001; Meerkat 7b vs Qwen2 7b, p = 0.012). Results are presented as mean values +/− 95% CI (n = 115). Models of the same family share the same color. Source data are provided as a Source Data file.
Fig. 3 Recall of “None of the above” of models on the MetaMedQA benchmark, including the 95% confidence interval. Representative statistical significance was determined using a one-way ANOVA with a Tukey correction for multiple comparisons and is indicated by asterisks above the brackets (* p < 0.05 and **** p < 0.0001; Meerkat 7b vs Qwen2 7b, p = 0.012). Results are presented as mean values +/− 95% CI (n = 115). Models of the same family share the same color. Source data are provided as a Source Data file.CC BY-NC-ND · PubMed Central
Fig. 4 Linear regression between missing answer recall and overall accuracy of language models (n = 10) on the MetaMedQA benchmark. The plot shows models excluding the outliers Yi 1.5 9B and Meerkat 7B. The solid line represents the linear regression fit, with the shaded area indicating the 95% confidence interval. Labeled points represent various models, while the unlabeled points from left to right are Mistral 7B, Internist 7B, and Llama 3 8B, respectively. Results are presented as mean values +/− 95% CI. Source data are provided as a Source Data file.
Fig. 4 Linear regression between missing answer recall and overall accuracy of language models (n = 10) on the MetaMedQA benchmark. The plot shows models excluding the outliers Yi 1.5 9B and Meerkat 7B. The solid line represents the linear regression fit, with the shaded area indicating the 95% confidence interval. Labeled points represent various models, while the unlabeled points from left to right are Mistral 7B, Internist 7B, and Llama 3 8B, respectively. Results are presented as mean values +/− 95% CI. Source data are provided as a Source Data file.CC BY-NC-ND · PubMed Central

Verification

Claims the paper makes

35 Own result · 22 Own interpretation · 9 No full text of the sources · 6 Own method · 6 No basis given · 4 Supported · 3 Partly supported · 2 Not checked yet · accuracy not yet measured

Show all 46 claims

  • It may state two separate claims as one. 25
  • Probably not a substantial claim. 24
41 of 41
  • The paper relies on this without support.

    The metacognitive abilities of LLMs remain largely unexplored.

    “However, their metacognitive abilities, crucial for medical decision-making, remain largely unexplored.”
    “we propose investigating a crucial but underexplored area: the assessment of LLMs’ metacognition.”
  • The paper relies on this without support.

    LLMs have restricted access to external cognitive processes.

    “Considering LLMs have restricted access to external cognitive processes, we argue that internal cognition processes from the DPT must compensate.”
2 of 2

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Citations

Cites

Show all 49 references

Research works printed but not linked: 1

  1. American Medical Association. Physician sentiments around the use of AI in heath care: motivations, opportunities, risks, and use cases. https://www.ama-assn.org/system/files/physician-ai-sentiment-report.pdf (2023).

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Metadata

Authors
Griot, M., Hemptinne, C., Vanderdonckt, J., & Yuksel, D.
Affiliations
  • UCLouvain (BE)
  • Cliniques Universitaires Saint-Luc (BE)
Corresponding author
Griot, Maxime
Venue
Nature Communications
Published
2025-01-14
Volume
16
Issue
1
Pages
642-642
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4406371336
Cited by
172
References
49
Citations by year
2026: 123 · 2025: 48
FWCI
32.39
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • Digital Access to Libraries (submittedVersion, other-oa)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
Fondation Saint-Luc, Grant 467E Fond Spécial de Recherche of Université catholique de Louvain
Topics
  • Health Sciences › Medicine › Health Informatics › Artificial Intelligence in Healthcare and Education
  • Physical Sciences › Computer Science › Artificial Intelligence › Machine Learning in Healthcare
  • Physical Sciences › Computer Science › Artificial Intelligence › Topic Modeling
Keywords
large language models, metacognition, medical reasoning, confidence calibration, clinical decision support, limits of knowledge, medical licensing examinations
MeSH terms
Clinical Decision-Making, Metacognition, Clinical Reasoning, Large Language Models, Decision Making, Humans, Decision Support Systems, Clinical

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