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Structural insights into SSNA1 self-assembly and its microtubule binding for centriole maintenance
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Abstract
SSNA1 is a fibrillar protein involved in dynamic microtubule remodeling, including nucleation, co-polymerization, and microtubule branching. The underlying molecular mechanism has remained unclear due to a lack of structural information. Here, we determine the cryo-EM structure of C.elegans SSNA-1 at 4.55-Å resolution and evaluate its role in embryonic development. We find that SSNA-1 forms an anti-parallel coiled-coil, with self-assembly facilitated by an overhang of 16 C-terminal residues that form a triple-stranded helical junction. The microtubule-binding region is within the triple-stranded junction, suggesting that self-assembly of SSNA-1 creates hubs for effective microtubule interaction. Genetical analysis elucidates that SSNA-1 deletion significantly reduces embryonic viability, and causes multipolar spindles during cell division. Interestingly, impairing SSNA-1 self-assembly has a comparable effect on embryonic viability as the knockout strain. Our study provides molecular insights into SSNA-1’s self-assembly and its role in microtubule binding and cell division regulation through centriole stability.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Research works printed but not linked: 54
- Ramos-Morales, F., Infante, C., Fedriani, C., Bornens, M. & Rios, R. M. NA14 is a novel nuclear autoantigen with a coiled-coil domain. J. Biol. Chem. 273, 1634–1639 (1998). · DOI
- Pfannenschmid, F. et al. Chlamydomonas DIP13 and human NA14: a new class of proteins associated with microtubule structures is involved in cell division. J. Cell Sci. 116, 1449–1462 (2003). · DOI
- Goyal, U., Renvoise, B., Chang, J. & Blackstone, C. Spastin-interacting protein NA14/SSNA1 functions in cytokinesis and axon development. PLoS One 9, e112428 (2014). · DOI
- Basnet, N. et al. Direct induction of microtubule branching by microtubule nucleation factor SSNA1. Nat. Cell Biol. 20, 1172–1180 (2018). · DOI
- Lawrence E. J., Arpag G., Arnaiz C. & Zanic M. SSNA1 stabilizes dynamic microtubules and detects microtubule damage. Elife 10, e67282 (2021). · DOI
- Rodriguez-Rodriguez, M. et al. Characterization of the structure and self-recognition of the human centrosomal protein NA14: implications for stability and function. Protein Eng. Des. Sel. 24, 883–892 (2011). · DOI
- Leveque, M. F., Berry, L. & Besteiro, S. An evolutionarily conserved SSNA1/DIP13 homologue is a component of both basal and apical complexes of Toxoplasma gondii. Sci. Rep. 6, 27809 (2016). · DOI
- Bornens, M. Centrosome composition and microtubule anchoring mechanisms. Curr. Opin. Cell Biol. 14, 25–34 (2002). · DOI
- Wu, J. & Akhmanova, A. Microtubule-organizing centers. Annu. Rev. Cell Dev. Biol. 33, 51–75 (2017). · DOI
- Nigg, E. A. & Holland, A. J. Once and only once: mechanisms of centriole duplication and their deregulation in disease. Nat. Rev. Mol. Cell Biol. 19, 297–312 (2018). · DOI
- Nigg, E. A. Origins and consequences of centrosome aberrations in human cancers. Int. J. Cancer 119, 2717–2723 (2006). · DOI
- Bettencourt-Dias, M., Hildebrandt, F., Pellman, D., Woods, G. & Godinho, S. A. Centrosomes and cilia in human disease. Trends Genet. 27, 307–315 (2011). · DOI
- O’Connell, K. F. et al. The C. elegans zyg-1 gene encodes a regulator of centrosome duplication with distinct maternal and paternal roles in the embryo. Cell 105, 547–558 (2001). · DOI
- Kemp, C. A., Kopish, K. R., Zipperlen, P., Ahringer, J. & O’Connell, K. F. Centrosome maturation and duplication in C. elegans require the coiled-coil protein SPD-2. Dev. Cell 6, 511–523 (2004). · DOI
- Pelletier, L. et al. The Caenorhabditis elegans centrosomal protein SPD-2 is required for both pericentriolar material recruitment and centriole duplication. Curr. Biol. 14, 863–873 (2004). · DOI
- Kirkham, M., Muller-Reichert, T., Oegema, K., Grill, S. & Hyman, A. A. SAS-4 is a C. elegans centriolar protein that controls centrosome size. Cell 112, 575–587 (2003). · DOI
- Leidel, S. & Gonczy, P. SAS-4 is essential for centrosome duplication in C elegans and is recruited to daughter centrioles once per cell cycle. Dev. Cell 4, 431–439 (2003). · DOI
- Delattre, M. et al. Centriolar SAS-5 is required for centrosome duplication in C. elegans. Nat. Cell Biol. 6, 656–664 (2004). · DOI
- Leidel, S., Delattre, M., Cerutti, L., Baumer, K. & Gonczy, P. SAS-6 defines a protein family required for centrosome duplication in C. elegans and in human cells. Nat. Cell Biol. 7, 115–125 (2005). · DOI
- Dammermann, A. et al. Centriole assembly requires both centriolar and pericentriolar material proteins. Dev. Cell 7, 815–829 (2004). · DOI
- Hilbert, M. et al. Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. Proc. Natl Acad. Sci. USA 110, 11373–11378 (2013). · DOI
- Kantsadi, A. L., Hatzopoulos, G. N., Gonczy, P. & Vakonakis, I. Structures of SAS-6 coiled coil hold implications for the polarity of the centriolar cartwheel. Structure 30, 671–684.e675 (2022). · DOI
- Bauer, M., Cubizolles, F., Schmidt, A. & Nigg, E. A. Quantitative analysis of human centrosome architecture by targeted proteomics and fluorescence imaging. EMBO J. 35, 2152–2166 (2016). · DOI
- Magescas, J., Zonka, J. C. & Feldman, J. L. A two-step mechanism for the inactivation of microtubule organizing center function at the centrosome. Elife 8, e47867 (2019). · DOI
- Fu, J. & Glover, D. M. Structured illumination of the interface between centriole and peri-centriolar material. Open Biol. 2, 120104 (2012). · DOI
- Mennella, V. et al. Subdiffraction-resolution fluorescence microscopy reveals a domain of the centrosome critical for pericentriolar material organization. Nat. Cell Biol. 14, 1159–1168 (2012). · DOI
- Lawo, S., Hasegan, M., Gupta, G. D. & Pelletier, L. Subdiffraction imaging of centrosomes reveals higher-order organizational features of pericentriolar material. Nat. Cell Biol. 14, 1148–1158 (2012). · DOI
- Woodruff, J. B., Wueseke, O. & Hyman A. A. Pericentriolar material structure and dynamics. Philos. Trans. R. Soc. Lond. B Biol. Sci. 369, 20130459 (2014). · DOI
- Woodruff, J. B. et al. Science. Regulated assembly of a supramolecular centrosome scaffold in vitro 348, 808–812 (2015).
- Wueseke, O. et al. Polo-like kinase phosphorylation determines Caenorhabditis elegans centrosome size and density by biasing SPD-5 toward an assembly-competent conformation. Biol. Open 5, 1431–1440 (2016). · DOI
- Conduit, P. T. et al. The centrosome-specific phosphorylation of Cnn by Polo/Plk1 drives Cnn scaffold assembly and centrosome maturation. Dev. Cell 28, 659–669 (2014). · DOI
- Feng, Z. et al. Structural basis for mitotic centrosome assembly in flies. Cell 169, 1078–1089.e1013 (2017). · DOI
- Lee, K. S., Park, J. E., Ahn, J. I. & Zeng, Y. Constructing PCM with architecturally distinct higher-order assemblies. Curr. Opin. Struct. Biol. 66, 66–73 (2021). · DOI
- Woodruff, J. B. et al. The centrosome is a selective condensate that nucleates microtubules by concentrating tubulin. Cell 169, 1066–1077.e1010 (2017). · DOI
- Conduit, P. T., Wainman, A. & Raff, J. W. Centrosome function and assembly in animal cells. Nat. Rev. Mol. Cell Biol. 16, 611–624 (2015). · DOI
- Kuhn, M., Hyman, A. A. & Beyer, A. Coiled-coil proteins facilitated the functional expansion of the centrosome. PLoS Comput. Biol. 10, e1003657 (2014). · DOI
- Pfister, J. A. et al. C. elegans SSNA-1 is required for the structural integrity of centrioles and bipolar spindle assembly. Nat. Commun. 16, 5220 (2025). · DOI
- Schwarz, A., Sankaralingam, P., O’Connell, K. F. & Muller-Reichert, T. Revisiting centrioles in nematodes-historic findings and current topics. Cells 7, 101 (2018). · DOI
- Kim, T. S. et al. Hierarchical recruitment of Plk4 and regulation of centriole biogenesis by two centrosomal scaffolds, Cep192 and Cep152. Proc. Natl Acad. Sci. USA 110, E4849–E4857 (2013). · DOI
- Pelletier, L., O’Toole, E., Schwager, A., Hyman, A. A. & Muller-Reichert, T. Centriole assembly in Caenorhabditis elegans. Nature 444, 619–623 (2006). · DOI
- Hori, A. & Toda, T. Regulation of centriolar satellite integrity and its physiology. Cell Mol. Life Sci. 74, 213–229 (2017). · DOI
- Tollenaere, M. A., Mailand, N. & Bekker-Jensen, S. Centriolar satellites: key mediators of centrosome functions. Cell Mol. Life Sci. 72, 11–23 (2015). · DOI
- Shelanski, M. L., Gaskin, F. & Cantor, C. R. Microtubule assembly in the absence of added nucleotides. Proc. Natl Acad. Sci. USA 70, 765–768 (1973). · DOI
- Sreerama, N. & Woody, R. W. Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set. Anal. Biochem. 287, 252–260 (2000). · DOI
- Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676–682 (2012). · DOI · Paper page
- Iyer, J., DeVaul, N., Hansen, T. & Nebenfuehr, B. Using microinjection to generate genetically modified Caenorhabditis elegans by CRISPR/Cas9 editing. Methods Mol. Biol. 1874, 431–457 (2019). · DOI
- Paix, A., Folkmann, A., Rasoloson, D. & Seydoux, G. High efficiency, homology-directed genome editing in Caenorhabditis elegans using CRISPR-Cas9 ribonucleoprotein complexes. Genetics 201, 47–54 (2015). · DOI
- O’Connell, K. F. & Golden, A. Confocal imaging of the microtubule cytoskeleton in C. elegans embryos and germ cells. Methods Mol. Biol. 1075, 257–272 (2014). · DOI
- Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017). · DOI · Paper page
- Pettersen, E. F. et al. UCSF ChimeraX: structure visualization for researchers, educators, and developers. Protein Sci. 30, 70–82 (2021). · DOI
- Mirdita, M. et al. ColabFold: making protein folding accessible to all. Nat. Methods 19, 679–682 (2022). · DOI · Paper page
- Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486–501 (2010). · DOI · Paper page
- Liebschner, D. et al. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallogr. D Struct. Biol. 75, 861–877 (2019). · DOI · Paper page
- Jurrus, E. et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci. 27, 112–128 (2018). · DOI
Metadata
- Authors
- Agostini, L., Pfister, J. A., Basnet, N., Ding, J., Zhang, R., Biertümpfel, C., O’Connell, K. F., & Mizuno, N.
- Affiliations
- National Institutes of Health (US)
- Washington University in St. Louis (US)
- Corresponding author
- Biertümpfel, Christian
- O’Connell, Kevin F.
- Mizuno, Naoko
- ORCID
- Venue
- Nature Communications
- Published
- 2025-08-13
- Volume
- 16
- Issue
- 1
- Pages
- 7512-7512
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC12350680
- OpenAlex
- W4413116633
- Cited by
- 10
- References
- 1
- Citations by year
- 2026: 2 · 2025: 7
- FWCI
- 4.49
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Nature Communications (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, public-domain)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, public-domain)
- Digital Commons@Becker (Washington University School of Medicine) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (1ZIAHL006264)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Microtubule and mitosis dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and Kidney Cyst Diseases
- Keywords
- fibrillar proteins, protein self-assembly, microtubule binding, coiled coil, microtubule remodeling, multipolar spindles, embryo viability, cell division regulation, Caenorhabditis elegans
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