The oral microbiome: diversity, biogeography and human health
Open accessAbstract
The human oral microbiota is highly diverse and has a complex ecology, comprising bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and highly structured biogeography that shapes metabolic exchange on a local scale and results from the diverse microenvironments present in the oral cavity. The oral microbiota also interfaces with the immune system of the human host and has an important role in not only the health of the oral cavity but also systemic health. In this Review, we highlight recent advances including novel insights into the biogeography of several oral niches at the species level, as well as the ecological role of candidate phyla radiation bacteria and non-bacterial members of the oral microbiome. In addition, we summarize the relationship between the oral microbiota and the pathology of oral diseases and systemic diseases. Together, these advances move the field towards a more holistic understanding of the oral microbiota and its role in health, which in turn opens the door to the study of novel preventive and therapeutic strategies.
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Cited by
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Li, Y., Wu, X., Liu, M., Deng, K., Tullini, A., Zhang, X., Shi, J., Lai, H., & Tonetti, M. S. (2024) · Journal of Clinical Periodontology · doi:10.1111/jcpe.13987 · Cited by 40 · see citing works
“Periodontitis is a chronic inflammatory disease driven by dysbiosis of dental biofilms (Baker et al., 2023; Kilian et al., 2016; Kinane et al., 2017).”
Zhou, J., Liu, H., Hu, L., Kagami, H., & Wang, S. (2024) · Medicine Plus · doi:10.1016/j.medp.2023.100003 · Cited by 17 · see citing works
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Kiouri, D. P., Batsis, G. C., & Chasapis, C. T. (2025) · Proteomes · doi:10.3390/proteomes13010010 · Cited by 3 · see citing works
- Authors
- Baker, J. L., Mark Welch, J. L., Kauffman, K. M., McLean, J. S., & He, X.
- Affiliations
- J. Craig Venter Institute (US)
- University at Buffalo, State University of New York (US)
- University of Washington (US)
- Harvard University (US)
- Corresponding author
- He, Xuesong
- Venue
- Nature Reviews Microbiology
- Published
- 2023-09-12
- Volume
- 22
- Issue
- 2
- Pages
- 89-104
- ISSN
- 1740-1526 (ISSN-L)
- 1740-1534
- PMC
- PMC11084736
- OpenAlex
- W4386625274
- Cited by
- 661
- References
- 13
- Citations by year
- 2026: 284 · 2025: 262 · 2024: 106 · 2023: 9
- FWCI
- 31.41
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Nature Reviews Microbiology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health
- National Institute of Dental and Craniofacial Research (R03DE030987, K99DE029228, R01DE022586, R01DE029479, R01DE031470, R00DE029228, R01DE030943, R01DE023810, R01DE016937)
- Topics
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- oral microbiota, microbial biogeography, Candidate Phyla Radiation, archaea, viruses, microeukaryotes, host-microbe interactions, oral diseases, systemic disease, oral health, microbial diversity
- MeSH terms
- Archaea, Bacteria, Humans, Mouth, Viruses, Microbiota
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