The DOI matches its Crossref record; 60 of the 60 references it cites were found in a registry or an index.
Transcriptional regulation of nitrogen-associated metabolism and growth
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The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research · doi:10.1101/gr.1239303 · Cited by 51,888
limma powers differential expression analyses for RNA-sequencing and microarray studies
Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., & Smyth, G. K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv007 · Cited by 40,458
Wickham, H. (2016) · Use R! · doi:10.1007/978-3-319-24277-4 · Cited by 33,115
HTSeq—a Python framework to work with high-throughput sequencing data
Anders, S., Pyl, P. T., & Huber, W. (2015) · Bioinformatics · doi:10.1093/bioinformatics/btu638 · Cited by 21,464
ggplot2: Elegant Graphics for Data Analysis
Wickham, H. (2009) · doi:10.1007/978-0-387-98141-3 · Cited by 14,447
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Edgar, R. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.207 · Cited by 13,288
A scaling method for priorities in hierarchical structures
Saaty, T. L. (1977) · Journal of Mathematical Psychology · doi:10.1016/0022-2496(77)90033-5 · Cited by 10,360
Agricultural sustainability and intensive production practices
Tilman, D., Cassman, K. G., Matson, P. A., Naylor, R., & Polasky, S. (2002) · Nature · doi:10.1038/nature01014 · Cited by 7,957
Porra, R. J., Thompson, W. A., & Kriedemann, P. E. (1989) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/s0005-2728(89)80347-0 · Cited by 5,992
Cited by
Nitrate in 2020: Thirty Years from Transport to Signaling Networks
Vidal, E. A., Alvarez, J. M., Araus, V., Riveras, E., Brooks, M. D., Krouk, G., Ruffel, S., Lejay, L., Crawford, N. M., Coruzzi, G. M., et al. (2020) · The Plant Cell · doi:10.1105/tpc.19.00748 · Cited by 382
NIN-like protein 7 transcription factor is a plant nitrate sensor
Liu, K.-H., Liu, M., Lin, Z., Wang, Z.-F., Chen, B., Liu, C., Guo, A., Konishi, M., Yanagisawa, S., Wagner, G., et al. (2022) · Science · doi:10.1126/science.add1104 · Cited by 284
Dynamic changes in mRNA nucleocytoplasmic localization in the nitrate response of Arabidopsis roots
(2024) · doi:10.1111/pce.15018 · Cited by 9
Metadata
- Authors
- Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bågman, A.-M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D., & Brady, S. M.
- Venue
- Nature
- Published
- 2018-10-24
- Volume
- 563
- Issue
- 7730
- Pages
- 259-264
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2896055880
- Cited by
- 346
- References
- 60
- FWCI
- 22.66
- Type
- journal article
- Language
- en
- Open access
- green
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- The paper
- Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bågman, A.-M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D., & Brady, S. M. (2018). Transcriptional regulation of nitrogen-associated metabolism and growth. Nature. https://doi.org/10.1038/s41586-018-0656-3
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.