NINJ1 mediates plasma membrane rupture during lytic cell death
Open accessPublished version of a preprint
Abstract
Abstract Plasma membrane rupture (PMR) is the final cataclysmic event in lytic cell death. PMR releases intracellular molecules termed damage-associated molecular patterns (DAMPs) that propagate the inflammatory response. The underlying mechanism for PMR, however, is unknown. Here we show that the ill-characterized nerve injury-induced protein 1 (NINJ1) — a cell surface protein with two transmembrane regions — plays an essential role in the induction of PMR. A forward-genetic screen of randomly mutagenized mice linked NINJ1 to PMR. Ninj1–/– macrophages exhibited impaired PMR in response to diverse inducers of pyroptotic, necrotic and apoptotic cell death, and failed to release numerous intracellular proteins including High Mobility Group Box 1 (HMGB1, a known DAMP) and Lactate Dehydrogenase (LDH, a standard measure of PMR). Ninj1–/– macrophages died, but with a distinctive and persistent ballooned morphology, attributable to defective disintegration of bubble-like herniations. Ninj1–/– mice were more susceptible than wild-type mice to Citrobacter rodentium, suggesting a role for PMR in anti-bacterial host defense. Mechanistically, NINJ1 utilized an evolutionarily conserved extracellular α-helical domain for oligomerization and subsequent PMR. The discovery of NINJ1 as a mediator of PMR overturns the long-held dogma that cell death-related PMR is a passive event. Pyroptosis is a potent inflammatory mode of lytic cell death triggered by diverse infectious and sterile insults1-3. It is driven by the pore-forming fragment of gasdermin D (GSDMD)4-7 and releases two exemplar proteins: interleukin-1β (IL-1β), a pro-inflammatory cytokine, and LDH, a standard marker of PMR and lytic cell death. An early landmark study8 predicted two sequential steps for pyroptosis: (1) initial formation of a small plasma membrane pore causing IL-1β release and non-selective ionic fluxes, and (2) subsequent PMR attributable to oncotic cell swelling. PMR releases LDH (140 kDa) and large DAMPs. While the predicted size of gasdermin pores (~18 nm inner diameter9) is large enough to release IL-1β (17 kDa, ~4.5 nm diameter), the underlying mechanism for subsequent PMR has been considered a passive osmotic lysis event.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Cell membrane rupture upon pyroptosis leads to the release of DAMPs such as HMGB1 as well as ASC specks into the extracellular space.
“Cell membrane rupture upon pyroptosis leads to the release of DAMPs such as HMGB1 as well as ASC specks into the extracellular space [69, 70].”
From Microglial function, INPP5D/SHIP1 signaling, and NLRP3 inflammasome activation: implications for Alzheimer’s disease (2023) · cites this paper as [69]
The Abstract and “NINJ1 is essential for pyroptosis-related PMR” section report that plasma membrane rupture releases DAMPs, including HMGB1, from pyroptotic cells. Our copy does not establish that rupture also releases ASC specks; a search for “ASC specks” found no supporting passage. Page numbers were not available in the indexed copy. (LLM, conf=0.88)
Experimental — accuracy not yet measuredPyroptosis may occur downstream of GSDMD pore formation and is mediated by Ninjurin1, a cell surface protein that induces plasma membrane rupture upon its oligomerization.
“Pyroptosis may occur downstream of GSDMD pore formation and is mediated by Ninjurin1 (NINJ1), a cell surface protein that induces plasma membrane rupture upon its oligomerization [68, 69].”
From Microglial function, INPP5D/SHIP1 signaling, and NLRP3 inflammasome activation: implications for Alzheimer’s disease (2023) · cites this paper as [69]
The Abstract and ‘NINJ1 oligomerizes for induction of PMR’ section support that NINJ1 is a cell-surface protein whose oligomerization induces plasma membrane rupture. But ‘NINJ1 is essential for pyroptosis-related PMR’ distinguishes that rupture from GSDMD-driven cell death: NINJ1 is required for the former, not pyroptosis as a whole. Our copy provides no page numbers for these passages. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Antimicrobial peptides of multicellular organisms
Zasloff, M. (2002) · Nature · doi:10.1038/415389a · Cited by 8,457 · see citing works
Non-canonical inflammasome activation targets caspase-11
Kayagaki, N., Warming, S., Lamkanfi, M., Walle, L. V., Louie, S., Dong, J., Newton, K., Qu, Y., Liu, J., Heldens, S., et al. (2011) · Nature · doi:10.1038/nature10558 · Cited by 2,530 · see citing works
Self-citationRogers, C., Fernandes-Alnemri, T., Mayes, L., Alnemri, D., Cingolani, G., & Alnemri, E. S. (2017) · Nature Communications · doi:10.1038/ncomms14128 · Cited by 1,510 · see citing works
HMGB1 is a therapeutic target for sterile inflammation and infection
Andersson, U., & Tracey, K. J. (2011) · Annual Review of Immunology · doi:10.1146/annurev-immunol-030409-101323 · Cited by 1,437 · see citing works
From basic apoptosis discoveries to advanced selective BCL-2 family inhibitors
Ashkenazi, A., Fairbrother, W. J., Leverson, J. D., & Souers, A. J. (2017) · Nature Reviews Drug Discovery · doi:10.1038/nrd.2016.253 · Cited by 903 · see citing works
Initiation and execution mechanisms of necroptosis: an overview
Grootjans, S., Vanden Berghe, T., & Vandenabeele, P. (2017) · Cell Death & Differentiation · doi:10.1038/cdd.2017.65 · Cited by 566 · see citing works
Flagged first, then by citations
Research works printed but not linked: 39
- Gaidt, M. M. & Hornung, V. Pore formation by GSDMD is the effector mechanism of pyroptosis. Embo J 35, 2167-2169, doi:10.15252/embj.201695415 (2016). · DOI
- Kayagaki, N. & Dixit, V. M. Rescue from a fiery death: A therapeutic endeavor. Science 366, 688-689, doi:10.1126/science.aaw1177 (2019). · DOI
- Shi, J. et al. Cleavage of GSDMD by inflammatory caspases determines pyroptotic cell death. Nature 526, 660-665, doi:10.1038/nature15514 (2015). · DOI · Paper page
- Kayagaki, N. et al. Caspase-11 cleaves gasdermin D for non-canonical inflammasome signalling. Nature 526, 666-671, doi:10.1038/nature15541 (2015). · DOI · Paper page
- Ding, J. et al. Pore-forming activity and structural autoinhibition of the gasdermin family. Nature 535, 111-116, doi:10.1038/nature18590 (2016). · DOI · Paper page
- Liu, X. et al. Inflammasome-activated gasdermin D causes pyroptosis by forming membrane pores. Nature 535, 153-158, doi:10.1038/nature18629 (2016). · DOI · Paper page
- Fink, S. L. & Cookson, B. T. Caspase-1-dependent pore formation during pyroptosis leads to osmotic lysis of infected host macrophages. Cellular microbiology 8, 1812-1825, doi:10.1111/j.1462-5822.2006.00751.x (2006). · DOI
- Ruan, J., Xia, S., Liu, X., Lieberman, J. & Wu, H. Cryo-EM structure of the gasdermin A3 membrane pore. Nature 557, 62-67, doi:10.1038/s41586-018-0058-6 (2018). · DOI
- Araki, T. & Milbrandt, J. Ninjurin, a novel adhesion molecule, is induced by nerve injury and promotes axonal growth. Neuron 17, 353-361, doi:10.1016/s0896-6273(00)80166-x (1996). · DOI
- Araki, T., Zimonjic, D. B., Popescu, N. C. & Milbrandt, J. Mechanism of homophilic binding mediated by ninjurin, a novel widely expressed adhesion molecule. J Biol Chem 272, 21373-21380, doi:10.1074/jbc.272.34.21373 (1997). · DOI
- Ahn, B. J. et al. Ninjurin1 is expressed in myeloid cells and mediates endothelium adhesion in the brains of EAE rats. Biochem Biophys Res Commun 387, 321-325, doi:10.1016/j.bbrc.2009.07.019 (2009). · DOI
- Liu, T. et al. Single-cell imaging of caspase-1 dynamics reveals an all-or-none inflammasome signaling response. Cell reports 8, 974-982, doi:10.1016/j.celrep.2014.07.012 (2014). · DOI
- de Vasconcelos, N. M., Van Opdenbosch, N., Van Gorp, H., Parthoens, E. & Lamkanfi, M. Single-cell analysis of pyroptosis dynamics reveals conserved GSDMD-mediated subcellular events that precede plasma membrane rupture. Cell Death Differ 26, 146-161, doi:10.1038/s41418-018-0106-7 (2019). · DOI
- DiPeso, L., Ji, D. X., Vance, R. E. & Price, J. V. Cell death and cell lysis are separable events during pyroptosis. Cell Death Discov 3, 17070, doi:10.1038/cddiscovery.2017.70 (2017). · DOI
- Stros, M. HMGB proteins: interactions with DNA and chromatin. Biochimica et biophysica acta 1799, 101-113, doi:10.1016/j.bbagrm.2009.09.008 (2010). · DOI
- Silva, M. T. Secondary necrosis: the natural outcome of the complete apoptotic program. FEBS Lett 584, 4491-4499, doi:10.1016/j.febslet.2010.10.046 (2010). · DOI
- Kerr, J. F., Wyllie, A. H. & Currie, A. R. Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26, 239-257, doi:10.1038/bjc.1972.33 (1972). · DOI
- Wang, Y. et al. Chemotherapy drugs induce pyroptosis through caspase-3 cleavage of a gasdermin. Nature 547, 99-103, doi:10.1038/nature22393 (2017). · DOI · Paper page
- Dijkstra, K., Hofmeijer, J., van Gils, S. A. & van Putten, M. J. A Biophysical Model for Cytotoxic Cell Swelling. J Neurosci 36, 11881-11890, doi:10.1523/JNEUROSCI.1934- 16.2016 (2016). · DOI
- Sun, L. et al. Mixed lineage kinase domain-like protein mediates necrosis signaling downstream of RIP3 kinase. Cell 148, 213-227, doi:10.1016/j.cell.2011.11.031 (2012). · DOI · Paper page
- Drin, G. & Antonny, B. Amphipathic helices and membrane curvature. FEBS Lett 584, 1840-1847, doi:10.1016/j.febslet.2009.10.022 (2010). · DOI
- Peter, B. J. et al. BAR domains as sensors of membrane curvature: the amphiphysin BAR structure. Science 303, 495-499, doi:10.1126/science.1092586 (2004). · DOI
- Auluck, P. K., Caraveo, G. & Lindquist, S. alpha-Synuclein: membrane interactions and toxicity in Parkinson's disease. Annu Rev Cell Dev Biol 26, 211-233, doi:10.1146/annurev.cellbio.042308.113313 (2010). · DOI
- Kayagaki, N. et al. IRF2 transcriptionally induces GSDMD expression for pyroptosis. Sci Signal 12, doi:10.1126/scisignal.aax4917 (2019). · DOI
- Andrews, T. D. et al. Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mouse models. Open biology 2, 120061, doi:10.1098/rsob.120061 (2012). · DOI
- Murphy, J. M. et al. The pseudokinase MLKL mediates necroptosis via a molecular switch mechanism. Immunity 39, 443-453, doi:10.1016/j.immuni.2013.06.018 (2013). · DOI · Paper page
- Modzelewski, A. J. et al. Efficient mouse genome engineering by CRISPR-EZ technology. Nat Protoc 13, 1253-1274, doi:10.1038/nprot.2018.012 (2018). · DOI
- Aglietti, R. A. et al. GsdmD p30 elicited by caspase-11 during pyroptosis forms pores in membranes. Proc Natl Acad Sci U S A 113, 7858-7863, doi:10.1073/pnas.1607769113 (2016). · DOI · Paper page
- Kayagaki, N. et al. Noncanonical inflammasome activation by intracellular LPS independent of TLR4. Science 341, 1246-1249, doi:10.1126/science.1240248 (2013). · DOI
- Contrepois, K. et al. Cross-Platform Comparison of Untargeted and Targeted Lipidomics Approaches on Aging Mouse Plasma. Sci Rep 8, 17747, doi:10.1038/s41598-018-35807-4 (2018). · DOI
- Bakalarski, C. E. et al. The impact of peptide abundance and dynamic range on stable- isotope-based quantitative proteomic analyses. J Proteome Res 7, 4756-4765, doi:10.1021/pr800333e (2008). · DOI
- Wang, G. G. et al. Quantitative production of macrophages or neutrophils ex vivo using conditional Hoxb8. Nature methods 3, 287-293, doi:10.1038/nmeth865 (2006). · DOI
- Wittig, I., Braun, H. P. & Schagger, H. Blue native PAGE. Nat Protoc 1, 418-428, doi:10.1038/nprot.2006.62 (2006). · DOI
- Waterhouse, A. et al. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res 46, W296-W303, doi:10.1093/nar/gky427 (2018). · DOI
- Ashkenazy, H., Erez, E., Martz, E., Pupko, T. & Ben-Tal, N. ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res 38, W529-533, doi:10.1093/nar/gkq399 (2010). · DOI
- Ashkenazy, H. et al. ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res 44, W344-350, doi:10.1093/nar/gkw408 (2016). · DOI · Paper page
- UniProt, C. UniProt: a worldwide hub of protein knowledge. Nucleic Acids Res 47, D506- D515, doi:10.1093/nar/gky1049 (2019). · DOI · Paper page
- Sievers, F. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7, 539, doi:10.1038/msb.2011.75 (2011). · DOI
- Robert, X. & Gouet, P. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res 42, W320-324, doi:10.1093/nar/gku316 (2014). Cse1l Exportin-2 -3.0024777 5.61E-10 Sptbn1 Spectrin beta chain, brain 1 -1.8489119 2.4E-15 Lars Leucyl-tRNA synthetase, cytoplasmic -2.7938336 2.31E-10 Slk STE20-like serine/threonine-protein kinase -1.9956628 5.01E-14 Eprs Bifunctional aminoacyl-tRNA synthetase -2.1459888 7.87E-13 Psmd6 26S proteasome non-ATPase regulatory subunit 6 -3.2169063 9.38E-09 · DOI · Paper page
Cited by
Sorted by citations
Inflammation and aging: signaling pathways and intervention therapies
Li, X., Li, C., Zhang, W., Wang, Y., Qian, P., & Huang, H. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01502-8 · Cited by 1,443 · see citing works
“4).(242) These findings suggest an age-associated dysregulation of necroptosis signaling, indicating a potential role for necroptosis in aging and related pathologies.”
BackgroundWang, Y., & Kanneganti, T.-D. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.07.038 · Cited by 545 · see citing works
Punching Holes in Cellular Membranes: Biology and Evolution of Gasdermins
De Schutter, E., Roelandt, R., Riquet, F. B., Van Camp, G., Wullaert, A., & Vandenabeele, P. (2021) · Trends in Cell Biology · doi:10.1016/j.tcb.2021.03.004 · Cited by 158 · see citing works
Lee, E., Song, C.-H., Bae, S.-J., Ha, K.-T., & Karki, R. (2023) · Experimental & Molecular Medicine · doi:10.1038/s12276-023-01069-y · Cited by 164 · see citing works
Gasdermin D-mediated metabolic crosstalk promotes tissue repair
Chi, Z., Chen, S., Yang, D., Cui, W., Lu, Y., Wang, Z., Li, M., Yu, W., Zhang, J., Jiang, Y., et al. (2024) · Nature · doi:10.1038/s41586-024-08022-7 · Cited by 116 · see citing works
Self-citationTerzioglu, G., & Young-Pearse, T. L. (2023) · Molecular Neurodegeneration · doi:10.1186/s13024-023-00674-9 · Cited by 95 · see citing works
Zia, S., Hammond, B. P., Zirngibl, M., Sizov, A., Baaklini, C. S., Panda, S. P., Ho, M. F. S., Lee, K. V., Mainali, A., Burr, M. K., et al. (2022) · Molecular Neurodegeneration · doi:10.1186/s13024-022-00584-2 · Cited by 40 · see citing works
- Authors
- Kayagaki, N., Kornfeld, O. S., Lee, B. L., Stowe, I. B., O’Rourke, K., Li, Q., Sandoval, W., Yan, D., Kang, J., Xu, M., Zhang, J., Lee, W. P., McKenzie, B. S., Ulas, G., Payandeh, J., Roose-Girma, M., Modrusan, Z., Reja, R., Sagolla, M., Webster, J. D., Cho, V., Andrews, T. D., Morris, L. X., Miosge, L. A., Goodnow, C. C., Bertram, E. M., & Dixit, V. M.
- Affiliations
- Genentech (US)
- Australian National University (AU)
- Garvan Institute of Medical Research (AU)
- Corresponding author
- Kayagaki, Nobuhiko
- Dixit, Vishva M.
- ORCID
- Kayagaki, Nobuhiko
- Kornfeld, Opher S.
- Li, Qingling
- Sandoval, Wendy
- Yan, Donghong
- Kang, Jing
- Xu, Min
- Zhang, Juan
- Lee, Wyne P.
- McKenzie, Brent S.
- Payandeh, Jian
- Modrusan, Zora
- Reja, Rohit
- Sagolla, Meredith
- Webster, Joshua D.
- Cho, Vicky
- Andrews, T. Daniel
- Miosge, Lisa A.
- Goodnow, Christopher C.
- Bertram, Edward M.
- Dixit, Vishva M.
- Venue
- Nature
- Published
- 2021-01-20
- Volume
- 591
- Issue
- 7848
- Pages
- 131-136
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W3115667040
- Cited by
- 857
- References
- 6
- Citations by year
- 2026: 199 · 2025: 182 · 2024: 150 · 2023: 135 · 2022: 138 · 2021: 51 · 2020: 1
- FWCI
- 38.82
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Locations
- Nature (publishedVersion)
- Research Square (acceptedVersion, cc-by)
- PubMed (publishedVersion)
- ANU Open Research (Australian National University) (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- Genentech
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Cell death mechanisms and regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Inflammasome and immune disorders
- Life Sciences › Immunology and Microbiology › Immunology › Immune Response and Inflammation
- Keywords
- NINJ1, plasma membrane rupture, lytic cell death, pyroptosis, necrosis, apoptosis, damage-associated molecular patterns, HMGB1, lactate dehydrogenase release, macrophages, Citrobacter rodentium infection, protein oligomerization, extracellular domain, forward genetic screen, inflammation
- MeSH terms
- Pyroptosis, Animals, Cell Membrane, Female, Humans, Macrophages, Male, Mutation, Necrosis, Nerve Growth Factors, Cell Adhesion Molecules, Neuronal, Cell Death, Apoptosis, Mice, Protein Multimerization
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review