The DOI matches its Crossref record; 99 of the 99 references it cites were found in a registry or an index.
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
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The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Robinson, J. T., Thorvaldsdóttir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., & Mesirov, J. P. (2011) · Nature Biotechnology · doi:10.1038/nbt.1754 · Cited by 15,390
Minimap2: Pairwise alignment for nucleotide sequences
Li, H. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty191 · Cited by 14,807
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
Dominissini, D., Moshitch-Moshkovitz, S., Schwartz, S., Salmon-Divon, M., Ungar, L., Osenberg, S., Cesarkas, K., Jacob-Hirsch, J., Amariglio, N., Kupiec, M., et al. (2012) · Nature · doi:10.1038/nature11112 · Cited by 4,884
Self-citationComprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
Meyer, K. D., Saletore, Y., Zumbo, P., Elemento, O., Mason, C. E., & Jaffrey, S. R. (2012) · Cell · doi:10.1016/j.cell.2012.05.003 · Cited by 4,223
Dynamic RNA Modifications in Gene Expression Regulation
Roundtree, I. A., Evans, M. E., Pan, T., & He, C. (2017) · Cell · doi:10.1016/j.cell.2017.05.045 · Cited by 3,399
SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells
Sachs, P., Ding, D., Bergmaier, P., Lamp, B., Schlagheck, C., Finkernagel, F., Nist, A., Stiewe, T., & Mermoud, J. E. (2019) · Nature Communications · doi:10.1038/s41467-019-09078-0 · Cited by 2,384
The Architecture of SARS-CoV-2 Transcriptome
Kim, D., Lee, J.-Y., Yang, J.-S., Kim, J. W., Kim, V. N., & Chang, H. (2020) · Cell · doi:10.1016/j.cell.2020.04.011 · Cited by 2,123
m 6 A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation
Geula, S., Moshitch-Moshkovitz, S., Dominissini, D., Mansour, A. A., Kol, N., Salmon-Divon, M., Hershkovitz, V., Peer, E., Mor, N., Manor, Y. S., et al. (2015) · Science · doi:10.1126/science.1261417 · Cited by 1,533
A complete bacterial genome assembled de novo using only nanopore sequencing data
Loman, N. J., Quick, J., & Simpson, J. T. (2015) · Nature Methods · doi:10.1038/nmeth.3444 · Cited by 1,294
Cited by
Nanopore sequencing technology, bioinformatics and applications
Wang, Y., Zhao, Y., Bollas, A., Wang, Y., & Au, K. F. (2021) · Nature Biotechnology · doi:10.1038/s41587-021-01108-x · Cited by 1,753
Wang, Y., Zhang, S., Jia, W., Fan, P., Wang, L., Li, X., Chen, J., Cao, Z., Du, X., Liu, Y., et al. (2022) · Nature Nanotechnology · doi:10.1038/s41565-022-01169-2 · Cited by 143
Mapping epigenetic modifications by sequencing technologies
Chen, X., Xu, H., Shu, X., & Song, C.-X. (2025) · Cell Death & Differentiation · doi:10.1038/s41418-023-01213-1 · Cited by 105
Baek, A., Lee, G.-E., Golconda, S., Rayhan, A., Manganaris, A. A., Chen, S., Tirumuru, N., Yu, H., Kim, S., Kimmel, C., et al. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01638-5 · Cited by 52
Detection of ribonucleotides embedded in DNA by Nanopore sequencing
Grasso, L., Fonzino, A., Manzari, C., Leonardi, T., Picardi, E., Gissi, C., Lazzaro, F., Pesole, G., & Muzi-Falconi, M. (2024) · Communications Biology · doi:10.1038/s42003-024-06077-w · Cited by 10
Metadata
- Authors
- Begik, O., Lucas, M. C., Pryszcz, L. P., Ramirez, J. M., Medina, R., Milenkovic, I., Cruciani, S., Liu, H., Vieira, H. G. S., Sas-Chen, A., Mattick, J. S., Schwartz, S., & Novoa, E. M.
- Venue
- Nature Biotechnology
- Published
- 2021-05-13
- Volume
- 39
- Issue
- 10
- Pages
- 1278-1291
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W3162353597
- Cited by
- 312
- References
- 99
- FWCI
- 14.16
- Type
- journal article
- Language
- en
- Open access
- green
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- The paper
- Begik, O., Lucas, M. C., Pryszcz, L. P., Ramirez, J. M., Medina, R., Milenkovic, I., Cruciani, S., Liu, H., Vieira, H. G. S., Sas-Chen, A., Mattick, J. S., Schwartz, S., & Novoa, E. M. (2021). Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00915-6
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