The DOI matches its Crossref record; 66 of the 66 references it cites were found in a registry or an index.
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
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Cites
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
A new mathematical model for relative quantification in real-time RT-PCR
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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M., et al. (2010) · Genome Research · doi:10.1101/gr.107524.110 · Cited by 27,895
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Nguyen, L.-T., Schmidt, H. A., von Haeseler, A., & Minh, B. Q. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msu300 · Cited by 26,046
HISAT: a fast spliced aligner with low memory requirements
Kim, D., Langmead, B., & Salzberg, S. L. (2015) · Nature Methods · doi:10.1038/nmeth.3317 · Cited by 24,112
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StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
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Cited by
Alonge, M., Lebeigle, L., Kirsche, M., Jenike, K., Ou, S., Aganezov, S., Wang, X., Lippman, Z. B., Schatz, M. C., & Soyk, S. (2022) · Genome Biology · doi:10.1186/s13059-022-02823-7 · Cited by 992
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., et al. (2020) · Cell · doi:10.1016/j.cell.2020.05.021 · Cited by 819
Self-citationEizenga, J. M., Novak, A. M., Sibbesen, J. A., Heumos, S., Ghaffaari, A., Hickey, G., Chang, X., Seaman, J. D., Rounthwaite, R., Ebler, J., et al. (2020) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-120219-080406 · Cited by 320
Pan-genomics in the human genome era
Sherman, R. M., & Salzberg, S. L. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-0210-7 · Cited by 359
How the pan-genome is changing crop genomics and improvement
Della Coletta, R., Qiu, Y., Ou, S., Hufford, M. B., & Hirsch, C. N. (2021) · Genome Biology · doi:10.1186/s13059-020-02224-8 · Cited by 268
Metadata
- Authors
- Gao, L., Gonda, I., Sun, H., Ma, Q., Bao, K., Tieman, D. M., Burzynski-Chang, E. A., Fish, T. L., Stromberg, K. A., Sacks, G. L., Thannhauser, T. W., Foolad, M. R., Diez, M. J., Blanca, J., Canizares, J., Xu, Y., van der Knaap, E., Huang, S., Klee, H. J., Giovannoni, J. J., & Fei, Z.
- Venue
- Nature Genetics
- Published
- 2019-05-13
- Volume
- 51
- Issue
- 6
- Pages
- 1044-1051
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2945365545
- Cited by
- 717
- References
- 66
- FWCI
- 44.69
- Type
- journal article
- Language
- en
- Open access
- closed
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Cite CoChat for the checks on this page, and the paper for its own findings.
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- CoChat. (2026). Citation check: The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. https://app.cochat.ai/papers/10.1038/s41588-019-0410-2
- The paper
- Gao, L., Gonda, I., Sun, H., Ma, Q., Bao, K., Tieman, D. M., Burzynski-Chang, E. A., Fish, T. L., Stromberg, K. A., Sacks, G. L., Thannhauser, T. W., Foolad, M. R., Diez, M. J., Blanca, J., Canizares, J., Xu, Y., van der Knaap, E., Huang, S., Klee, H. J., . . . Fei, Z. (2019). The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor. Nature Genetics. https://doi.org/10.1038/s41588-019-0410-2
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
