Cited by 57T-cell and B-cell Immunologyvaccines and immunoinformatics approachesPsoriasis: Treatment and Pathogenesis

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Vγ9Vδ2 T cells recognize butyrophilin 2A1 and 3A1 heteromers

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Abstract

Butyrophilin (BTN) molecules are emerging as key regulators of T cell immunity; however, how they trigger cell-mediated responses is poorly understood. Here, the crystal structure of a gamma-delta T cell antigen receptor (γδTCR) in complex with BTN2A1 revealed that BTN2A1 engages the side of the γδTCR, leaving the apical TCR surface bioavailable. We reveal that a second γδTCR ligand co-engages γδTCR via binding to this accessible apical surface in a BTN3A1-dependent manner. BTN2A1 and BTN3A1 also directly interact with each other in cis, and structural analysis revealed formation of W-shaped heteromeric multimers. This BTN2A1-BTN3A1 interaction involved the same epitopes that BTN2A1 and BTN3A1 each use to mediate the γδTCR interaction; indeed, locking BTN2A1 and BTN3A1 together abrogated their interaction with γδTCR, supporting a model wherein the two γδTCR ligand-binding sites depend on accessibility to cryptic BTN epitopes. Our findings reveal a new paradigm in immune activation, whereby γδTCRs sense dual epitopes on BTN complexes.

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Research works printed but not linked: 38

  1. Ribot, J. C., Lopes, N. & Silva-Santos, B. γδ T cells in tissue physiology and surveillance. Nat. Rev. Immunol. 21, 221–232 (2021). · DOI · Paper page
  2. Constant, P. et al. Stimulation of human gamma delta T cells by nonpeptidic mycobacterial ligands. Science 264, 267–270 (1994). · DOI
  3. Tanaka, Y. et al. Natural and synthetic non-peptide antigens recognized by human gamma delta T cells. Nature 375, 155–158 (1995). · DOI
  4. Tyler, C. J., Doherty, D. G., Moser, B. & Eberl, M. Human Vγ9/Vδ2 T cells: innate adaptors of the immune system. Cell Immunol. 296, 10–21 (2015). · DOI
  5. Hoeres, T., Smetak, M., Pretscher, D. & Wilhelm, M. Improving the efficiency of Vγ9Vδ2 T-cell immunotherapy in cancer. Front. Immunol. 9, 800 (2018). · DOI
  6. Di Marco Barros, R. et al. Epithelia use butyrophilin-like molecules to shape organ-specific γδ T cell compartments. Cell 167, 203–218 (2016). · DOI
  7. Melandri, D. et al. The γδTCR combines innate immunity with adaptive immunity by utilizing spatially distinct regions for agonist selection and antigen responsiveness. Nat. Immunol. 19, 1352–1365 (2018). · DOI
  8. Boyden, L. M. et al. Skint1, the prototype of a newly identified immunoglobulin superfamily gene cluster, positively selects epidermal γδ T cells. Nat. Genet. 40, 656–662 (2008). · DOI
  9. Jandke, A. et al. Butyrophilin-like proteins display combinatorial diversity in selecting and maintaining signature intraepithelial γδ T cell compartments. Nat. Commun. 11, 3769 (2020). · DOI
  10. Sandstrom, A. et al. The intracellular B30.2 domain of butyrophilin 3A1 binds phosphoantigens to mediate activation of human Vγ9Vδ2 T cells. Immunity 40, 490–500 (2014). · DOI
  11. Rigau, M. et al. Butyrophilin 2A1 is essential for phosphoantigen reactivity by γδ T cells. Science 367, eaay5516 (2020). · DOI
  12. Karunakaran, M. M. et al. Butyrophilin-2A1 directly binds germline-encoded regions of the Vγ9Vδ2 TCR and is essential for phosphoantigen sensing. Immunity 52, 487–498.e6 (2020). · DOI
  13. Willcox, C. R. et al. Butyrophilin-like 3 directly binds a human Vγ4+ T cell receptor using a modality distinct from clonally-restricted antigen. Immunity 51, 813–825 (2019). · DOI
  14. Vyborova, A. et al. γ9δ2T cell diversity and the receptor interface with tumor cells. J. Clin. Invest. 130, 4637–4651 (2020). · DOI
  15. Wang, H., Fang, Z. & Morita, C. T. Vγ2Vδ2 T cell receptor recognition of prenyl pyrophosphates is dependent on all CDRs. J. Immunol. 184, 6209–6222 (2010). · DOI
  16. Harly, C. et al. Key implication of CD277/butyrophilin-3 (BTN3A) in cellular stress sensing by a major human γδ T-cell subset. Blood 120, 2269–2279 (2012). · DOI
  17. Palakodeti, A. et al. The molecular basis for modulation of human Vγ9Vδ2 T cell responses by CD277/butyrophilin-3 (BTN3A)-specific antibodies. J. Biol. Chem. 287, 32780–32790 (2012). · DOI
  18. Karunakaran, M. M. et al. A distinct topology of BTN3A IgV and B30.2 domains controlled by juxtamembrane regions favors optimal human γδ T cell phosphoantigen sensing. Nat. Commun. 14, 7617 (2023). · DOI
  19. Gu, S. et al. Phosphoantigen-induced conformational change of butyrophilin 3A1 (BTN3A1) and its implication on Vγ9Vδ2 T cell activation. Proc. Natl Acad. Sci. USA 114, E7311–E7320 (2017). · DOI
  20. Vantourout, P. et al. Heteromeric interactions regulate butyrophilin (BTN) and BTN-like molecules governing γδ T cell biology. Proc. Natl Acad. Sci. USA 115, 1039–1044 (2018). · DOI · Paper page
  21. Cano, C. E. et al. BTN2A1, an immune checkpoint targeting Vγ9Vδ2 T cell cytotoxicity against malignant cells. Cell Rep. 36, 109359 (2021). · DOI
  22. Hsiao, C.-H. C., Nguyen, K., Jin, Y., Vinogradova, O. & Wiemer, A. J. Ligand-induced interactions between butyrophilin 2A1 and 3A1 internal domains in the HMBPP receptor complex. Cell Chem. Biol. 29, 985–995 (2022). · DOI
  23. Yuan, L. et al. Phosphoantigens glue butyrophilin 3A1 and 2A1 to activate Vγ9Vδ2 T cells. Nature 621, 840–848 (2023). · DOI
  24. Wang, H. et al. Conservation of nonpeptide antigen recognition by Rhesus monkey Vγ2Vδ2 T cells. J. Immunol. 170, 3696–3706 (2003). · DOI
  25. Ding, Y. H. et al. Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids. Immunity 8, 403–411 (1998). · DOI
  26. Uldrich, A. P. et al. CD1d-lipid antigen recognition by the γδ TCR. Nat. Immunol. 14, 1137–1145 (2013). · DOI
  27. Holst, J. et al. Generation of T-cell receptor retrogenic mice. Nat. Protoc. 1, 406–417 (2006). · DOI
  28. Le Nours, J. et al. Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens. Nat. Commun. 7, 10570 (2016). · DOI
  29. Kim, H. K. et al. Deep learning improves prediction of CRISPR-Cpf1 guide RNA activity. Nat. Biotechnol. 36, 239–241 (2018). · DOI
  30. Moll, J. R., Ruvinov, S. B., Pastan, I. & Vinson, C. Designed heterodimerizing leucine zippers with a ranger of pIs and stabilities up to 10−15 M. Protein Sci. 10, 649–655 (2001). · DOI
  31. Aricescu, A. R., Lu, W. & Jones, E. Y. A time- and cost-efficient system for high-level protein production in mammalian cells. Acta Crystallogr. D. Biol. Crystallogr. 62, 1243–1250 (2006). · DOI
  32. Aragao, D. et al. MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron. J. Synchrotron Radiat. 25, 885–891 (2018). · DOI
  33. Battye, T. G., Kontogiannis, L., Johnson, O., Powell, H. R. & Leslie, A. G. iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM. Acta Crystallogr. D. Biol. Crystallogr. 67, 271–281 (2011). · DOI
  34. Eichinger, A., Neumaier, I. & Skerra, A. The extracellular region of bovine milk butyrophilin exhibits closer structural similarity to human myelin oligodendrocyte glycoprotein than to immunological BTN family receptors. Biol. Chem. 402, 1187–1202 (2021). · DOI
  35. Allison, T. J., Winter, C. C., Fournie, J. J., Bonneville, M. & Garboczi, D. N. Structure of a human gammadelta T-cell antigen receptor. Nature 411, 820–824 (2001). · DOI
  36. Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D. Biol. Crystallogr. 66, 213–221 (2010). · DOI · Paper page
  37. Winn, M. D. et al. Overview of the CCP4 suite and current developments. Acta Crystallogr. D. Biol. Crystallogr. 67, 235–242 (2011). · DOI · Paper page
  38. Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017). · DOI · Paper page

Metadata

Authors
Fulford, T. S., Soliman, C., Castle, R. G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H. G., Hanssen, E., Hammet, A., Li, S., Redmond, S. J., Chung, A., Gorman, M. A., Parker, M. W., Patel, O., Peat, T. S., Newman, J., Behren, A., Gherardin, N. A., Godfrey, D. I., & Uldrich, A. P.
Affiliations
  • The University of Melbourne (AU)
  • University of Bonn (DE)
  • Commonwealth Scientific and Industrial Research Organisation (AU)
  • CSL (Australia) (AU)
Corresponding author
  • Godfrey, Dale I.
  • Uldrich, Adam P.
Venue
Nature Immunology
Published
2024-07-16
Volume
25
Issue
8
Pages
1355-1366
ISSN
  • 1529-2908 (ISSN-L)
  • 1529-2916
OpenAlex
W4400689609
Cited by
57
References
2
Citations by year
2026: 26 · 2025: 25 · 2024: 6
FWCI
9.53
Type
journal article
Language
en
Open access
Locations
  • Nature Immunology (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed (publishedVersion)
  • Minerva Access (University of Melbourne) (submittedVersion)
  • Griffith Research Online (submittedVersion, other-oa)
Funders
  • Department of Health | National Health and Medical Research Council (1184906, 1165467, 1117766, 2008913, 1194263)
  • Cancer Council Victoria (1126866)
  • Department of Education and Training | Australian Research Council (DP230102753, CE140100011, DE210100705)
Topics
  • Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › vaccines and immunoinformatics approaches
  • Life Sciences › Immunology and Microbiology › Immunology › Psoriasis: Treatment and Pathogenesis
Keywords
Vγ9Vδ2 T cells, butyrophilin, BTN2A1, BTN3A1, T cell receptor stimulation, crystal structure, T cell immunity
MeSH terms
Butyrophilins, Intraepithelial Lymphocytes, Humans, Lymphocyte Activation, Models, Molecular, Protein Binding, T-Lymphocytes, Antigens, CD, Receptors, Antigen, T-Cell, gamma-delta, Crystallography, X-Ray, Protein Multimerization

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