SARS-CoV-2 and bat RaTG13 spike glycoprotein structures inform on virus evolution and furin-cleavage effects

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Longitudinal analysis of SARS-CoV-2 spike and RNA-dependent RNA polymerase protein sequences reveals the emergence and geographic distribution of diverse mutations

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Furin cleavage sites in the spike proteins of bat and rodent coronaviruses: Implications for virus evolution and zoonotic transfer from rodent species

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A Bispecific Antibody Targeting RBD and S2 Potently Neutralizes SARS-CoV-2 Omicron and Other Variants of Concern

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Probing the biophysical constraints of SARS-CoV-2 spike N-terminal domain using deep mutational scanning

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SARS-CoV-2 Genomic Variation in Space and Time in Hospitalized Patients in Philadelphia

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Molecular-Level Anatomy of SARS-CoV-2 for the Battle against the COVID-19 Pandemic

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The SARS-CoV-2 Delta variant induces an antibody response largely focused on class 1 and 2 antibody epitopes

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Effect of polymorphism in Rhinolophus affinis ACE2 on entry of SARS-CoV-2 related bat coronaviruses

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Expression of the readthrough transcript CiDRE in alveolar macrophages boosts SARS-CoV-2 susceptibility and promotes COVID-19 severity

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The PRRA Insert at the S1/S2 Site Modulates Cellular Tropism of SARS-CoV-2 and ACE2 Usage by the Closely Related Bat RaTG13

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Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display

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Structural changes in the SARS-CoV-2 spike E406W mutant escaping a clinical monoclonal antibody cocktail

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Modeling coronavirus spike protein dynamics: implications for immunogenicity and immune escape

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Molecular Mechanisms of the Medicines for COVID-19

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Advances in Targeting ACE2 for Developing COVID-19 Therapeutics

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SARS-CoV-2 Spike Protein Extrapolation for COVID Diagnosis and Vaccine Development

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Emergence and spread of feline infectious peritonitis due to a highly pathogenic canine/feline recombinant coronavirusPreprint

Attipa, C., Warr, A., Epaminondas, D., O’Shea, M., Hanton, A. J., Fletcher, S., Malbon, A. J., Lyraki, M., Hammond, R., Hardas, A., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.08.566182 · Cited by 23

A highly immunogenic live-attenuated vaccine candidate prevents SARS-CoV-2 infection and transmission in hamsters

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RAGE engagement by SARS-CoV-2 enables monocyte infection and underlies COVID-19 severity

Angioni, R., Bonfanti, M., Caporale, N., Sánchez‐Rodríguez, R., Munari, F., Savino, A., Pasqualato, S., Buratto, D., Pagani, I., Bertoldi, N., et al. (2023) · Cell Reports Medicine · doi:10.1016/j.xcrm.2023.101266 · Cited by 24

ACE2 from Pipistrellus abramus bats is a receptor for HKU5 coronaviruses

Catanzaro, N., Wu, Z., Fan, C., Jefferson, V. A., Abdelgadir, A., Schäfer, A., Yount, B. L., Björkman, P. J., Baric, R. S., & Letko, M. C. (2025) · Nature Communications · doi:10.1038/s41467-025-60286-3 · Cited by 38

New Consensus pattern in Spike CoV-2: potential implications in coagulation process and cell–cell fusion

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3044 Cases reveal important prognosis signatures of COVID-19 patients

Qin, S., Li, W., Shi, X., Wu, Y., Wang, C., Shen, J., Pang, R., He, B., Zhao, J. F., Qiao, Q., et al. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.01.042 · Cited by 21

Post-COVID syndrome: prevalence, organ pathogenesis and routes of correction. A systematic review

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Furin and COVID-19: Structure, Function and Chemoinformatic Analysis of Representative Active Site Inhibitors

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SARS-CoV-2 and the Missing Link of Intermediate Hosts in Viral Emergence - What We Can Learn From Other Betacoronaviruses

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Electron cryotomography of SARS-CoV-2 virions reveals cylinder-shaped particles with a double layer RNP assembly

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How helpful were molecular dynamics simulations in shaping our understanding of SARS-CoV-2 spike protein dynamics?

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Heterologous humoral immunity to human and zoonotic coronaviruses: Aiming for the achilles heel

Ng, K. W., Faulkner, N., Wrobel, A. G., Gamblin, S. J., & Kassiotis, G. (2021) · Seminars in Immunology · doi:10.1016/j.smim.2021.101507 · Cited by 19

A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features

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Clinical and Molecular Relationships between COVID-19 and Feline Infectious Peritonitis (FIP)

Sweet, A., André, N. M., Stout, A. E., Licitra, B. N., & Whittaker, G. R. (2022) · Viruses · doi:10.3390/v14030481 · Cited by 20

Pseudotyped Bat Coronavirus RaTG13 is efficiently neutralised by convalescent sera from SARS-CoV-2 infected patients

Cantoni, D. M., Neto, M. M., Thakur, N., Elrefaey, A. M. E., Newman, J., Vishwanath, S., Nadesalingam, A., Chan, A., Smith, P., Castillo‐Olivares, J., et al. (2022) · Communications Biology · doi:10.1038/s42003-022-03325-9 · Cited by 17

Structural effects of spike protein D614G mutation in SARS-CoV-2

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Lysozyme Protects Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection and Inflammation in Human Corneal Epithelial Cells

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Sequential glycosylations at the multibasic cleavage site of SARS-CoV-2 spike protein regulate viral activity

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Structural determinants of spike infectivity in bat SARS-like coronaviruses RsSHC014 and WIV1

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Neurological pathogenesis of SARS-CoV-2 (COVID-19): from virological features to clinical symptoms

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Immunogenicity of novel mRNA COVID-19 vaccine MRT5500 in mice and non-human primates

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Cryo-EM reveals binding of linoleic acid to SARS-CoV-2 spike glycoprotein, suggesting an antiviral treatment strategy

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Antibody targeting of conserved sites of vulnerability on the SARS-CoV-2 spike receptor-binding domain

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Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants

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Antibody Mediated Immunity to SARS-CoV-2 and Human Coronaviruses: Multiplex Beads Assay and Volumetric Absorptive Microsampling to Generate Immune Repertoire Cartography

Wang, J., Li, D., Zhou, Q., Wiltse, A., & Zand, M. S. (2021) · Frontiers in Immunology · doi:10.3389/fimmu.2021.696370 · Cited by 17

Sensitivity of SARS-CoV-2 towards Alcohols: Potential for Alcohol-Related Toxicity in Humans

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The role of influenza-A virus and coronavirus viral glycoprotein cleavage in host adaptation

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SARS-CoV-2 spike variants differ in their allosteric responses to linoleic acid

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Uncovering the Role of N-Glycan Occupancy on the Cooperative Assembly of Spike and Angiotensin Converting Enzyme 2 Complexes: Insights from Glycoengineering and Native Mass Spectrometry

El‐Baba, T. J., Lutomski, C. A., Burnap, S. A., Bolla, J. R., Baker, L. A., Baldwin, A. J., Struwe, W. B., & Robinson, C. V. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c00291 · Cited by 22

Disulfide stabilization reveals conserved dynamic features between SARS-CoV-1 and SARS-CoV-2 spikes

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Evaluation of protein descriptors in computer-aided rational protein engineering tasks and its application in property prediction in SARS-CoV-2 spike glycoprotein

Lim, H., Jeon, H.-N., Lim, S., Jang, Y., Kim, T., Cho, H., Pan, J., & No, K. T. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.01.027 · Cited by 17

Structural Bases of Zoonotic and Zooanthroponotic Transmission of SARS-CoV-2

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Nanoparticles for Coronavirus Control

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A pangolin-origin SARS-CoV-2-related coronavirus: infectivity, pathogenicity, and cross-protection by preexisting immunity

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Ongoing evolution of SARS-CoV-2 drives escape from mRNA vaccine-induced humoral immunity

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Host and viral determinants of airborne transmission of SARS-CoV-2 in the Syrian hamster

Port, J. R., Morris, D. H., Riopelle, J. C., Yinda, C. K., Avanzato, V. A., Holbrook, M. G., Bushmaker, T., Schulz, J. E., Saturday, T. A., Barbian, K., et al. (2023) · eLife · doi:10.7554/elife.87094 · Cited by 21

Bat and pangolin coronavirus spike glycoprotein structures provide insights into SARS-CoV-2 evolutionPreprint

Zhang, S., Qiao, S., Yu, J., Zeng, J., Shan, S., Lan, J., Tian, L., Zhang, L., & Wang, X. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.21.307439 · Cited by 16

Local emergence and decline of a SARS-CoV-2 variant with mutations L452R and N501Y in the spike proteinPreprint

Mallm, J., Bundschuh, C., Kim, H., Weidner, N., Steiger, S., Lander, I., Börner, K., Bauer, K., Hübschmann, D., Beneš, V., et al. (2021) · medRxiv · doi:10.1101/2021.04.27.21254849 · Cited by 16

Receptor Binding for the Entry Mechanisms of SARS-CoV-2: Insights from the Original Strain and Emerging Variants

Mahdi, M., Kiarie, I. W., Mótyán, J. A., Hoffka, G., Al-Muffti, A. S., Tóth, A., & Tőzsér, J. (2025) · Viruses · doi:10.3390/v17050691 · Cited by 16

The atomic portrait of SARS‐CoV‐2 as captured by cryo‐electron microscopy

Fertig, T. E., Chiţoiu, L., Terinte‐Balcan, G., Peteu, V. E., Marta, D. S., & Gherghiceanu, M. (2021) · Journal of Cellular and Molecular Medicine · doi:10.1111/jcmm.17103 · Cited by 14

Natural selection plays a significant role in governing the codon usage bias in the novel SARS-CoV-2 variants of concern (VOC)

Tyagi, N., Sardar, R., & Gupta, D. K. (2022) · PeerJ · doi:10.7717/peerj.13562 · Cited by 15

Molecular dynamics simulations explore effects of electric field orientations on spike proteins of SARS-CoV-2 virions

Kuang, Z., Luginsland, J. W., Thomas, R. J., Dennis, P. B., Kelley‐Loughnane, N., Roach, W. P., & Naik, R. R. (2022) · Scientific Reports · doi:10.1038/s41598-022-17009-1 · Cited by 15

Broad‐spectrum antiviral activity of Spatholobus suberectus Dunn against SARS‐CoV ‐2, SARS‐CoV ‐1, H5N1 , and other enveloped viruses

Liu, Q., Kwan, K., Cao, T., Yan, B., Ganesan, K., Jia, L., Zhang, F., Lim, C., Wu, Y., Feng, Y., et al. (2022) · Phytotherapy Research · doi:10.1002/ptr.7452 · Cited by 14

Methotrexate inhibition of SARS-CoV-2 entry, infection and inflammation revealed by bioinformatics approach and a hamster model

Chen, Y., Chang, Y.-H., Pathak, N., Tzou, S.-C., Luo, Y.-C., Hsu, Y.-C., Li, T., Lee, J.-Y., Chen, Y.-C., Huang, Y., et al. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.1080897 · Cited by 15

Determinants of species-specific utilization of ACE2 by human and animal coronaviruses

Wang, Q., Noettger, S., Xie, Q., Pastorio, C., Seidel, A., Müller, J. A., Jung, C., Jacob, T., Sparrer, K. M. J., Zech, F., et al. (2023) · Communications Biology · doi:10.1038/s42003-023-05436-3 · Cited by 15

Imaging and visualizing SARS-CoV-2 in a new era for structural biology

Leigh, K. E., & Modis, Y. (2021) · Interface Focus · doi:10.1098/rsfs.2021.0019 · Cited by 17

Mechanistic Origin of Different Binding Affinities of SARS-CoV and SARS-CoV-2 Spike RBDs to Human ACE2

Zhang, Z.-B., Xia, Y.-L., Shen, J., Du, W.-W., Fu, Y., & Liu, S.-Q. (2022) · Cells · doi:10.3390/cells11081274 · Cited by 15

Carbohydrate-binding protein from stinging nettle as fusion inhibitor for SARS-CoV-2 variants of concern

Vanhulle, E., D’huys, T., Provinciael, B., Stroobants, J., Camps, A., Noppen, S., Schols, D., Damme, E. J. M. V., Maes, P., Stevaert, A., et al. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.989534 · Cited by 16

Proviral role of human respiratory epithelial cell‐derived small extracellular vesicles in SARS‐CoV‐2 infection

Berry, F., Morin‐Dewaele, M., Majidipur, A., Jamet, T., Bartier, S., Ignjatovic, E., Toniutti, D., Lopes, J. G., Soyeux, P., Maillé, P., et al. (2022) · Journal of Extracellular Vesicles · doi:10.1002/jev2.12269 · Cited by 18

Establishment of angiotensin-converting enzyme 2 and cluster of differentiation 147 dual target cell membrane chromatography based on SNAP-tag technology for screening anti severe acute respiratory syndrome coronavirus 2 active components

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Total escape of SARS-CoV-2 from dual monoclonal antibody therapy in an immunocompromised patient

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Peptides and peptidomimetics as therapeutic agents for Covid‐19

Dahal, A., Sonju, J. J., Kousoulas, K. G., & Jois, S. D. S. (2021) · Peptide Science · doi:10.1002/pep2.24245 · Cited by 14

COVID-19: Myths and Reality

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In Silico Protein Folding Prediction of COVID-19 Mutations and Variants

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Evolution of Sequence and Structure of SARS-CoV-2 Spike Protein: A Dynamic Perspective

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What makes SARS‐CoV‐2 unique? Focusing on the spike protein

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Are the emerging SARS-COV-2 mutations friend or foe?

Erol, A. (2021) · Immunology Letters · doi:10.1016/j.imlet.2020.12.014 · Cited by 14

Pseudoephedrine and its derivatives antagonize wild and mutated severe acute respiratory syndrome ‐CoV ‐2 viruses through blocking virus invasion and antiinflammatory effect

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Human interaction targets of SARS-CoV-2 spike protein: A systematic review

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Heparin Inhibits SARS-CoV-2 Replication in Human Nasal Epithelial Cells

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Biophysical investigation of interactions between SARS‐CoV ‐2 spike protein and neuropilin‐1

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Lys417 acts as a molecular switch that regulates the conformation of SARS-CoV-2 spike protein

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Alpha-Soluble NSF Attachment Protein Prevents the Cleavage of the SARS-CoV-2 Spike Protein by Functioning as an Interferon-Upregulated Furin Inhibitor

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Insights Into the Changing Landscape of Coronavirus Disease 2019

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A snapshot of protein trafficking in SARS‐CoV‐2 infection

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Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design

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Vaccinia Virus Strain MVA Expressing a Prefusion-Stabilized SARS-CoV-2 Spike Glycoprotein Induces Robust Protection and Prevents Brain Infection in Mouse and Hamster Models

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In Silico Analyses Indicate a Lower Potency for Dimerization of TLR4/MD-2 as the Reason for the Lower Pathogenicity of Omicron Compared to Wild-Type Virus and Earlier SARS-CoV-2 Variants

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Haplotype distribution of SARS-CoV-2 variants in low and high vaccination rate countries during ongoing global COVID-19 pandemic in early 2021

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Neuropilin-1 in the pathogenesis of preeclampsia, HIV-1, and SARS-CoV-2 infection: A review

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Would It Be Possible to Stabilize Prefusion SARS-COV-2 Spikes with Ligands?Preprint

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Molecular basis of SARS-CoV-2 Omicron variant receptor engagement and antibody evasion and neutralizationPreprint

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Myotis fimbriatus Virome, a Window to Virus Diversity and Evolution in the Genus Myotis

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The respective roles of TMPRSS2 and cathepsins for SARS-CoV-2 infection in human respiratory organoids

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Intranasal immunization with avian paramyxovirus type 3 expressing SARS-CoV-2 spike protein protects hamsters against SARS-CoV-2

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SARS-CoV-2 Portrayed against HIV: Contrary Viral Strategies in Similar Disguise

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Computational modeling of protein conformational changes - Application to the opening SARS-CoV-2 spike

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Looking for SARS-CoV-2 Therapeutics Through Computational Approaches

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Impacts on the structure-function relationship of SARS-CoV-2 spike by B.1.1.7 mutationsPreprint

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ACE2 from Pipistrellus abramus bats is a receptor for HKU5 coronavirusesPreprint

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Bat and pangolin coronavirus spike glycoprotein structures provide insights into SARS-CoV-2 evolution

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Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion

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Structural basis of receptor recognition by SARS-CoV-2

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Structural Analysis Of The Receptor Binding Motif Of Spike Glycoprotein Explains The High Stability Of SARS-CoV-2 RBD/hACE2-complexPreprint

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Structure and binding properties of Pangolin-CoV spike glycoprotein inform the evolution of SARS-CoV-2

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