Isolation and characterization of novel Bacillus strains with superior probiotic potential: comparative analysis and safety evaluation
Open accessAbstract
Despite the current use of some Bacillus spp. as probiotics, looking for and introducing new efficient and safe potential probiotic strains is one of the most important topics in both microbiology and food industry. This study aimed to isolate, identify, and evaluate the probiotic characteristics and safety of some Bacillus spp. from natural sources. Thirty-six spore-forming, Gram-positive, and catalase-positive Bacillus isolates were identified in 54 samples of soil, feces and dairy products. Bacterial identification was performed using 16S rDNA sequencing. To evaluate the probiotic potential of isolates, the resistance of bacterial cells to simulated gastrointestinal tract (GIT) conditions, the presence of enterotoxin genes, their susceptibility to antibiotics, antimicrobial and hemolytic activities and biochemical profiles were investigated. The results revealed that eight sporulating Bacillus spp. isolates fulfilled all tested probiotic criteria. They showed a high growth rate, non-hemolytic and lecithinase activity, and resistance to simulated GIT conditions. These strains exhibited broad-spectrum antibacterial activity against pathogenic bacteria. In addition, they did not exhibit antibacterial resistance to the 12 tested antibiotics. The results of this study suggest that these isolates can be considered as candidates for functional foods and as safe additives to improve diet quality.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Safety studies have been mostly performed for the use of Bacillus probiotics as food additives in humans, but they are lacking when they are used as sanitizers in PBS.
“In addition, safety studies have been mostly performed for the use of Bacillus probiotics as food additives in humans, also recently [46], but they are lacking when they are used as sanitizers in PBS.”
From Profiling the resistome and virulome of Bacillus strains used for probiotic-based sanitation: a multicenter WGS analysis (2025) · cites this paper as [46]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
Antibiotic Susceptibility Testing by a Standardized Single Disk Method
Bauer, A. W., Kirby, W. M. M., Sherris, J. C., & Turck, M. (1966) · American Journal of Clinical Pathology · doi:10.1093/ajcp/45.4_ts.493 · Cited by 18,523 · see citing works
16S ribosomal DNA amplification for phylogenetic study
Weisburg, W. G., Barns, S. M., Pelletier, D. A., & Lane, D. J. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.2.697-703.1991 · Cited by 11,970 · see citing works
Methods for in vitro evaluating antimicrobial activity: A review
Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016) · Journal of Pharmaceutical Analysis · doi:10.1016/j.jpha.2015.11.005 · Cited by 7,264 · see citing works
Bacillus subtilis antibiotics: structures, syntheses and specific functions
Stein, T. H. (2005) · Molecular Microbiology · doi:10.1111/j.1365-2958.2005.04587.x · Cited by 1,509 · see citing works
Jorgensen, J. H., & Clinical (2006) · Clinical and Laboratory Standards Institute eBooks · Cited by 1,052 · see citing works
The use of bacterial spore formers as probiotics: Table 1
Hong, H. A., Duc, L. H., & Cutting, S. M. (2004) · FEMS Microbiology Reviews · doi:10.1016/j.femsre.2004.12.001 · Cited by 980 · see citing works
Diversity and applications of Bacillus bacteriocins
Abriouel, H., Franz, C. M. A. P., Benomar, N., & Gálvez, A. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2010.00244.x · Cited by 633 · see citing works
A Simplified Method of Staining Endospores
Schaeffer, A. B., & Fulton, M. D. (1933) · Science · doi:10.1126/science.77.1990.194 · Cited by 496 · see citing works
Characterization of Bacillus Probiotics Available for Human Use
Duc, L. H., Hong, H. A., Barbosa, T. M., Henriques, A. O., & Cutting, S. M. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.4.2161-2171.2004 · Cited by 434 · see citing works
Angmo, K., Kumari, A., Savitri, & Bhalla, T. C. (2015) · LWT · doi:10.1016/j.lwt.2015.10.057 · Cited by 381 · see citing works
Huang, Y., & Adams, M. C. (2003) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2003.07.001 · Cited by 367 · see citing works
Ragione, R. M. L. (2003) · Veterinary Microbiology · doi:10.1016/s0378-1135(03)00077-4 · Cited by 307 · see citing works
Toxin gene profiling of enterotoxic and emetic Bacillus cereus
Ehling‐Schulz, M., Guinebretière, M., Monthán, A., Berge, O., Fricker, M., & Svensson, B. (2006) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2006.00320.x · Cited by 277 · see citing works
Hoa, N. T., Baccigalupi, L., Huxham, A., Smertenko, A., Vân, P. H., Ammendola, S., Ricca, E., & Cutting, S. M. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.12.5241-5247.2000 · Cited by 249 · see citing works
The safety of Bacillus subtilis and Bacillus indicus as food probiotics
Hong, H. A., Huang, J.-M., Khaneja, R., Hiep, L. V., Urdaci, M. C., & Cutting, S. M. (2008) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2008.03773.x · Cited by 213 · see citing works
Bacillus safensis sp. nov., isolated from spacecraft and assembly-facility surfaces
Satomi, M., Duc, M. T. L., & Venkateswaran, K. J. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64189-0 · Cited by 209 · see citing works
The Safety of Two Bacillus Probiotic Strains for Human Use
Sorokulova, I. B., Pinchuk, I. V., Denayrolles, M., Осипова, И. Г., Huang, J. M., Cutting, S. M., & Urdaci, M. C. (2007) · Digestive Diseases and Sciences · doi:10.1007/s10620-007-9959-1 · Cited by 196 · see citing works
The effect of bile acids on intestinal microflora
Floch, M. H., Binder, H. J., Filburn, B., & Gershengoren, W. (1972) · American Journal of Clinical Nutrition · doi:10.1093/ajcn/25.12.1418 · Cited by 191 · see citing works
Guo, X., Li, D., Lu, W., et al. (2006) · Antonie van Leeuwenhoek · doi:10.1007/s10482-006-9067-9 · Cited by 189 · see citing works
Antimicrobial activities of some Bacillus spp. strains isolated from the soil
Yılmaz, M., Soran, H., & Beyatlı, Y. (2005) · Microbiological Research · doi:10.1016/j.micres.2005.07.001 · Cited by 169 · see citing works
Chen, X., Zhang, Y., Fu, X., Li, Y., & Wang, Q. (2016) · Postharvest Biology and Technology · doi:10.1016/j.postharvbio.2015.12.021 · Cited by 151 · see citing works
Characterization of Bacillus spp. strains for use as probiotic additives in pig feed
Larsen, N., Thorsen, L., Kpikpi, E. N., Stuer‐Lauridsen, B., Cantor, M. D., Nielsen, B. K. K., Brockmann, E., Derkx, P. M. F., & Jespersen, L. (2013) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-013-5343-6 · Cited by 141 · see citing works
Characterization of Two Bacillus Probiotics
Green, D. H., Wakeley, P., Page, A. M., Barnes, A. G. C., Baccigalupi, L., Ricca, E., & Cutting, S. M. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.9.4288-4291.1999 · Cited by 139 · see citing works
Probiotic characteristics of Bacillus strains isolated from Korean traditional soy sauce
Lee, S., Lee, J., Jin, Y.-I., Jeong, J.-C., Chang, Y. H., Lee, Y., Jeong, Y., & Kim, M. (2017) · LWT - Food Science and Technology · doi:10.1016/j.lwt.2016.08.040 · Cited by 117 · see citing works
Barzegar, H., Alizadeh Behbahani, B., & Falah, F. (2021) · Food Science & Nutrition · doi:10.1002/fsn3.2365 · Cited by 108 · see citing works
Jena, P. K., Trivedi, D., Thakore, K., Chaudhary, H., Giri, S. S., & Seshadri, S. (2013) · Microbiology and Immunology · doi:10.1111/1348-0421.12054 · Cited by 107 · see citing works
Evaluation of the probiotic characteristics of Bacillus species isolated from different food sources
Nithya, V., & Halami, P. M. (2012) · Annals of Microbiology · doi:10.1007/s13213-012-0453-4 · Cited by 105 · see citing works
Niazi, A., Manzoor, S., Bejai, S., Meijer, J., & Bongcam‐Rudloff, E. (2014) · Standards in Genomic Sciences · doi:10.4056/sigs.4758653 · Cited by 104 · see citing works
Cai, D., Rao, Y., Zhan, Y., et al. (2019) · Journal of Applied Microbiology · doi:10.1111/jam.14192 · Cited by 99 · see citing works
Bacillus siamensis sp. nov., isolated from salted crab (poo-khem) in Thailand
Sumpavapol, P., Tongyonk, L., Tanasupawat, S., et al. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.018879-0 · Cited by 94 · see citing works
Lee, A., Cheng, K., & Liu, J. (2017) · PLoS ONE · doi:10.1371/journal.pone.0182220 · Cited by 89 · see citing works
Patel, A. K., Deshattiwar, M. K., Chaudhari, B. L., & Chincholkar, S. B. (2008) · Bioresource Technology · doi:10.1016/j.biortech.2008.05.008 · Cited by 88 · see citing works
Kim, J., Kim, J., Cho, S.-H., et al. (2011) · Journal of Food Science · doi:10.1111/j.1750-3841.2010.01958.x · Cited by 83 · see citing works
Tanavar, H., Barzegar, H., Behbahani, B. A., et al. (2021) · Food Science & Nutrition · doi:10.1002/fsn3.2522 · Cited by 78 · see citing works
Şeker, E. (2009) · Mycopathologia · doi:10.1007/s11046-009-9255-z · Cited by 76 · see citing works
Rai, A. K., Sanjukta, S., Chourasia, R., et al. (2017) · Bioresource Technology · doi:10.1016/j.biortech.2017.03.139 · Cited by 75 · see citing works
Gu, S., Zhao, L., Wu, Y., Li, S., Sun, J., Huang, J., & Li, D. (2015) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-015-1838-x · Cited by 74 · see citing works
Shinde, T., Vemuri, R., Shastri, M. D., Perera, A. P., Tristram, S. G., Stanley, R. A., & Eri, R. D. (2018) · Journal of Functional Foods · doi:10.1016/j.jff.2018.10.031 · Cited by 72 · see citing works
Ciurescu, G., Dumitru, M., Gheorghe, A., et al. (2020) · Poultry Science · doi:10.1016/j.psj.2020.08.075 · Cited by 65 · see citing works
Deng, F., Chen, Y., Sun, T., et al. (2020) · Food Research International · doi:10.1016/j.foodres.2020.109949 · Cited by 60 · see citing works
Plasmids in Lactobacillus Strains Isolated from Meat and Meat Products
Ahrné, S., Molin, G., & Ståhl, S. R. (1989) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(89)80031-1 · Cited by 58 · see citing works
Zangeneh, M., Khorrami, S., & Khaleghi, M. (2020) · Food Science & Nutrition · doi:10.1002/fsn3.1890 · Cited by 54 · see citing works
Althubiani, A. S., Maher, Y., Fathi, A., Abourehab, M. A. S., Alarjah, M. A., Khan, M. S., & AL-Ghamdi, S. B. (2018) · Saudi Pharmaceutical Journal · doi:10.1016/j.jsps.2018.05.019 · Cited by 52 · see citing works
Manhar, A. K., Saikia, D., Bashir, Y., Mech, R. K., Nath, D., Konwar, B. K., & Mandal, M. (2015) · Research in Veterinary Science · doi:10.1016/j.rvsc.2015.01.008 · Cited by 48 · see citing works
Probiotics and benefits to human health — the evidence in favour
Rowland, I. (1999) · Environmental Microbiology · doi:10.1046/j.1462-2920.1999.00064.x · Cited by 47 · see citing works
Okaiyeto, K., Nwodo, U. U., Mabinya, L. V., et al. (2015) · Molecules · doi:10.3390/molecules20035239 · Cited by 43 · see citing works
Jafarinasab, T., Khaleghi, M., Farsinejad, A., & Khorrami, S. (2021) · Biotechnology Reports · doi:10.1016/j.btre.2021.e00593 · Cited by 43 · see citing works
Jiménez, G., Blanch, A. R., Tamames, J., et al. (2013) · Genome Announcements · doi:10.1128/genomea.01080-13 · Cited by 36 · see citing works
Three novel Bacillus strains from a traditional lacto-fermented pickle as potential probiotics
Talebi, S., Makhdoumi, A., Bahreini, M., Matin, M. M., & Moradi, H. S. (2018) · Journal of Applied Microbiology · doi:10.1111/jam.13901 · Cited by 35 · see citing works
Bacillus subtilis isolates from camel milk as probiotic candidates
Daneshazari, R., Khorasgani, M. R., Abari, A. H., & Kim, J. (2023) · Scientific Reports · doi:10.1038/s41598-023-30507-0 · Cited by 30 · see citing works
Isolation of Campylobacter from human stool samples
Salim, S., Mandal, J., & Parija, S. (2014) · Indian Journal of Medical Microbiology · doi:10.4103/0255-0857.124294 · Cited by 28 · see citing works
Probiotic Potential of Pediococcus pentosaceus BCNU 9070
Shin, H.-J., Choi, H.-J., Kim, D.-W., Ahn, C., Lee, Y.-G., Jeong, Y.-K., & Joo, W.-H. (2012) · Journal of Life Science · doi:10.5352/jls.2012.22.9.1194 · Cited by 26 · see citing works
Sharma, N. (2016) · Journal of Clinical Microbiology and Biochemical Technology · doi:10.17352/jcmbt.000011 · Cited by 25 · cited 1× · see citing works
“Sharma et al. suggested that an appropriate probiotic strain should withstand at least pH 3.0 34 , while Hong et al. reported that Bacillus strains exhibit different resistances to gastric acid and not all are resistant to these conditions 35 .”
InfluentialKyriakis, S. C., Georgoulakis, I. E., Spais, A. B., Alexopoulos, C., MILIOTIS, C. C., & Kritas, S. K. (2003) · Asian-Australasian Journal of Animal Sciences · doi:10.5713/ajas.2003.1326 · Cited by 19 · see citing works
Isolation and Biocontrol Potential of Bacillus amyloliquefaciens Y1 against Fungal Plant Pathogens
Jamal, Q., Lee, Y. S., Jeon, H. D., et al. (2015) · 한국토양비료학회지 · doi:10.7745/kjssf.2015.48.5.485 · Cited by 19 · see citing works
Sen, R., Pal, D., Kodali, V. P., Das, S., & Ghosh, S. K. (2010) · Probiotics and Antimicrobial Proteins · doi:10.1007/s12602-010-9049-0 · Cited by 13 · see citing works
Khan, M. N., Bashir, S., & Imran, M. (2023) · Folia Microbiologica · doi:10.1007/s12223-023-01048-w · Cited by 13 · see citing works
Seo, W.-T., Nam, S.-H., Lee, C.-K., et al. (2011) · Preventive Nutrition and Food Science · doi:10.3746/jfn.2011.16.1.037 · Cited by 8 · see citing works
Chon, J., & Seo, K. (2021) · Food Control · doi:10.1016/j.foodcont.2021.108188 · Cited by 5 · see citing works
Ołtuszak-Walczak, E., Walczak, P., & Modrak, R. (2006) · PubMed · Cited by 5 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- [54]Vos P Bergey’s Manual of Systematic Bacteriology: Volume 3: The Firmicutes 2011 Springer Science & Business Media
Cited by
Sorted by citations
Understanding the Functionality of Probiotics on the Edge of Artificial Intelligence (AI) Era
Asar, R., Erenler, S., Devecioglu, D., Ispirli, H., Karbancioglu-Guler, F., Ozturk, H. I., & Dertli, E. (2025) · Fermentation · doi:10.3390/fermentation11050259 · Cited by 37 · see citing works
Bini, F., Soffritti, I., D’Accolti, M., Mazziga, E., Caballero, J. D., David, S., Argimon, S., Aanensen, D. M., Volta, A., Bisi, M., et al. (2025) · BMC Genomics · doi:10.1186/s12864-025-11582-1 · Cited by 11 · see citing works
- Authors
- Golnari, M., Bahrami, N., Milanian, Z., Rabbani Khorasgani, M., Asadollahi, M. A., Shafiei, R., & Fatemi, S. S.-A.
- Affiliations
- University of Isfahan (IR)
- NourDanesh Institute of Higher Education (IR)
- National Institute of Genetic Engineering and Biotechnology (IR)
- Corresponding author
- Asadollahi, Mohammad Ali
- Venue
- Scientific Reports
- Published
- 2024-01-17
- Volume
- 14
- Issue
- 1
- Pages
- 1457-1457
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC10791968
- OpenAlex
- W4390953960
- Cited by
- 86
- References
- 61
- Citations by year
- 2026: 37 · 2025: 36 · 2024: 13
- FWCI
- 18.41
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Ehyagaran Ghalb Sanat Asia (94/146295)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Food Science › Probiotics and Fermented Foods
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Keywords
- Bacillus, probiotic potential, probiotic safety, gastrointestinal resistance, enterotoxin genes, antibiotic susceptibility, antibacterial activity, hemolytic activity, lecithinase activity, soil bacteria, fecal bacteria, dairy products, functional foods, 16S rRNA identification
- MeSH terms
- Anti-Bacterial Agents, Bacillus, Feces, Gastrointestinal Diseases, Humans, Probiotics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review