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HDACs, histone deacetylation and gene transcription: from molecular biology to cancer therapeutics
Abstract
Histone deacetylases (HDACs) and histone acetyl transferases (HATs) are two counteracting enzyme families whose enzymatic activity controls the acetylation state of protein lysine residues, notably those contained in the N-terminal extensions of the core histones. Acetylation of histones affects gene expression through its influence on chromatin conformation. In addition, several non-histone proteins are regulated in their stability or biological function by the acetylation state of specific lysine residues. HDACs intervene in a multitude of biological processes and are part of a multiprotein family in which each member has its specialized functions. In addition, HDAC activity is tightly controlled through targeted recruitment, protein-protein interactions and post-translational modifications. Control of cell cycle progression, cell survival and differentiation are among the most important roles of these enzymes. Since these processes are affected by malignant transformation, HDAC inhibitors were developed as antineoplastic drugs and are showing encouraging efficacy in cancer patients.
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“The mammalian HDAC family consists of 18 isoforms categorized into four major classes (Classes I–IV) (Zhang et al., 2024; Glozak et al., 2005; Gallinari et al., 2007; Yang and Grégoire, 2005), as summarized in Table 1 (Vanaja et al., 2018; Johnstone, 2002; Gao et al., 2002; Tong et al., 2002; Hubbert et al., 2002).”
From Histone modifications and depression: epigenetic mechanisms, therapeutic targets, and translational outlook (2026) · cites this paper as Gallinari et al., 2007
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“Considering the fact that the molecular mechanism of HDACi drugs to rectify gene expression is mainly limited to aberrantly altered genes and thus to cancer or precancer cells, this is not surprising (Lindemann et al., 2004; Gallinari et al., 2007).”
BackgroundEpigenetics: tools and technologies
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Zinc-dependent histone deacetylases: Potential therapeutic targets for arterial hypertension
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“and survival controllers.(16) Histone hyperacetylation activates tumor-suppressor genes (TSG) and represses oncogenes, restoring the normal cell state.”
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Naturally Occurring Regulators of Histone Acetylation/Deacetylation
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Dual Targeting Strategies on Histone Deacetylase 6 (HDAC6) and Heat Shock Protein 90 (Hsp90)
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Epigenetics in Asthma and Other Inflammatory Lung Diseases
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“In humans, HDACs are grouped in four classes of proteins: class I, IIa, IIb, III, and IV [15–17].”
BackgroundA steered molecular dynamics mediated hit discovery for histone deacetylases
Kalyaanamoorthy, S., & Chen, Y. P. (2013) · Physical Chemistry Chemical Physics · doi:10.1039/c3cp53511h · Cited by 32
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MRE11 as a molecular signature and therapeutic target for cancer treatment with radiotherapy
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Epigenetics of Triple-Negative Breast Cancer via Natural Compounds
Kaleem, M., Perwaiz, M., Nur, S. M., Abdulrahman, A. O., Ahmad, W., Al-Abbasi, F. A., Kumar, V., Kamal, M. A., & Anwar, F. (2021) · Current Medicinal Chemistry · doi:10.2174/0929867328666210707165530 · Cited by 34
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A regulatory circuit comprising the CBP and SIRT7 regulates FAM134B-mediated ER-phagy
Wang, X., Jiang, X. M., Li, B., Zheng, J., Guo, J., Gao, L., Du, M., Weng, X., Li, L., Chen, S., et al. (2023) · The Journal of Cell Biology · doi:10.1083/jcb.202201068 · Cited by 29
“Acetyltransferases and deacetylases control the homeostasis of protein acetylation, and the latter consists of HDAC and the Sirtuin (SIRT) family deacetylases (Drazic et al., 2016; Gallinari et al., 2007).”
BackgroundIbitoye, E. B., Lokman, I. H., Hezmee, M. N. M., Goh, Y. M., Zuki, A. B. Z., Jimoh, A. A., Danmaigoro, A., & Nicholas, N. P. (2018) · Poultry Science · doi:10.3382/ps/pey419 · Cited by 31
“tion is known to increase mRNA expression (Gallinari et al., 2007).”
Background
Metadata
- Authors
- Gallinari, P., Marco, S. D., Jones, P., Pallaoro, M., & Steinkühler, C.
- Affiliations
- Institute of Molecular Biology and Pathology (IT)
- Corresponding author
- Steinkühler, Christian
- Venue
- Cell Research
- Published
- 2007-02-27
- Volume
- 17
- Issue
- 3
- Pages
- 195-211
- ISSN
- 1001-0602 (ISSN-L)
- 1748-7838
- OpenAlex
- W2031954417
- Semantic Scholar
- 755cb3e836171a20f267d47b6677a035efcf7c22
- Cited by
- 678
- References
- 165
- Citations by year
- 2026: 47 · 2025: 87 · 2024: 38 · 2023: 37 · 2022: 52 · 2021: 58 · 2020: 30 · 2019: 29 · 2018: 28 · 2017: 20 · 2016: 29 · 2015: 22 · 2014: 27 · 2013: 38 · 2012: 20
- FWCI
- 2.44
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Cell Research (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- histone deacetylase, histone acetyltransferase, histone acetylation, gene transcription, chromatin conformation, histone deacetylase inhibitors, cancer therapeutics, non-histone protein acetylation, post-translational modification, cell cycle regulation, cell differentiation, malignant transformation
- MeSH terms
- Acetylation, Animals, Histone Deacetylases, Histones, Humans, Models, Biological, Models, Molecular, Molecular Biology, Neoplasms, Transcription, Genetic, Histone Deacetylase Inhibitors
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