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HDACs, histone deacetylation and gene transcription: from molecular biology to cancer therapeutics
Abstract
Histone deacetylases (HDACs) and histone acetyl transferases (HATs) are two counteracting enzyme families whose enzymatic activity controls the acetylation state of protein lysine residues, notably those contained in the N-terminal extensions of the core histones. Acetylation of histones affects gene expression through its influence on chromatin conformation. In addition, several non-histone proteins are regulated in their stability or biological function by the acetylation state of specific lysine residues. HDACs intervene in a multitude of biological processes and are part of a multiprotein family in which each member has its specialized functions. In addition, HDAC activity is tightly controlled through targeted recruitment, protein-protein interactions and post-translational modifications. Control of cell cycle progression, cell survival and differentiation are among the most important roles of these enzymes. Since these processes are affected by malignant transformation, HDAC inhibitors were developed as antineoplastic drugs and are showing encouraging efficacy in cancer patients.
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“The mammalian HDAC family consists of 18 isoforms categorized into four major classes (Classes I–IV) (Zhang et al., 2024; Glozak et al., 2005; Gallinari et al., 2007; Yang and Grégoire, 2005), as summarized in Table 1 (Vanaja et al., 2018; Johnstone, 2002; Gao et al., 2002; Tong et al., 2002; Hubbert et al., 2002).”
From Histone modifications and depression: epigenetic mechanisms, therapeutic targets, and translational outlook (2026) · cites this paper as Gallinari et al., 2007
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Microbiome as an immune regulator in health, disease, and therapeutics
Juarez, V. M., Montalbine, A. N., & Singh, A. K. (2022) · Advanced Drug Delivery Reviews · doi:10.1016/j.addr.2022.114400 · Cited by 77
Fluorescent Probes for Single-Step Detection and Proteomic Profiling of Histone Deacetylases
Xie, Y., Ge, J., Lei, J. H., Peng, B., Zhang, H., Wang, D., Pan, S., Chen, G., Chen, L., Wang, Y., et al. (2016) · Journal of the American Chemical Society · doi:10.1021/jacs.6b07334 · Cited by 74
Acetylation of αA-crystallin in the human lens: Effects on structure and chaperone function
Nagaraj, R. H., Nahomi, R. B., Shanthakumar, S., Linetsky, M. D., Padmanabha, S., Pasupuleti, N., Wang, B., Santhoshkumar, P., Panda, A. K., & Biswas, A. (2011) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2011.11.011 · Cited by 72
Lai, M.-J., Huang, H.-L., Pan, S., Liu, Y.-M., Peng, C.-Y., Lee, H., Yeh, T., Huang, P.-H., Teng, C., Chen, C., et al. (2012) · Journal of Medicinal Chemistry · doi:10.1021/jm300197a · Cited by 72
Histone deacetylases 1 and 2 maintain S-phase chromatin and DNA replication fork progression
Bhaskara, S., Jacques, V., Rusche, J. R., Olson, E. N., Cairns, B. R., & Chandrasekharan, M. B. (2013) · Epigenetics & Chromatin · doi:10.1186/1756-8935-6-27 · Cited by 76
Borbone, E., Berlingieri, M. T., Bellis, F. D., Nebbioso, A., Chiappetta, G., Mai, A., Altucci, L., & Fusco, A. (2009) · Oncogene · doi:10.1038/onc.2009.306 · Cited by 70
“Mammalian HDACs are divided into four classes: (a) class I includes HDACs 1, 2, 3 and 8; (b) class II includes HDACs 4, 5, 6, 7, 9 and 10; (c) class III HDACs are the sirtuins (SIRT1-7); and (d) class IV contains HDAC 11 (Gallinari et al, 2007; Mai and Altucci, 2009; Altucci and Stunnenberg, 2009).”
InfluentialIdentification of novel quinazoline derivatives as potent antiplasmodial agents
Bouchut, A., Rotili, D., Pierrot, C., Valente, S., Lafitte, S., Schultz, J., Höglund, U., Mazzone, R., Lucidi, A., Fabrizi, G., et al. (2018) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2018.10.041 · Cited by 70
Valproic Acid Activates Notch1 Signaling and Induces Apoptosis in Medullary Thyroid Cancer Cells
Greenblatt, D. Y., Cayo, M. A., Adler, J. T., Ning, L., Haymart, M. R., Kunnimalaiyaan, M., & Chen, H. (2008) · Annals of Surgery · doi:10.1097/sla.0b013e3181758d0e · Cited by 70
Malinen, M., Saramäki, A., Ropponen, A., Degenhardt, T., Vaïsänen, S., & Carlberg, C. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm913 · Cited by 70
“The regulation of deacetylation activity of HDAC3 and class II HDACs by stimulus-dependent nucleocytoplasmic shuttling (3) enables an additional layer for cell-specific fine-tuning of nuclear receptor response.”
BackgroundChronic stress and antidepressant induced changes in Hdac5 and Sirt2 affect synaptic plasticity
Erburu, M. M., Muñoz-Cobo, I., Domínguez‐Andrés, J., Beltrán, E., Suzuki, T., Mai, A., Valente, S., Puerta, E., & Tordera, R. M. (2015) · European Neuropsychopharmacology · doi:10.1016/j.euroneuro.2015.08.016 · Cited by 73
Epigenetics of Huntington’s Disease
Bassi, S., Tripathi, T., Monziani, A., Leva, F. D., & Biagioli, M. (2017) · Advances in experimental medicine and biology · doi:10.1007/978-3-319-53889-1_15 · Cited by 66
MYCN Impact on High-Risk Neuroblastoma: From Diagnosis and Prognosis to Targeted Treatment
Bartolucci, D., Montemurro, L., Raieli, S., Lampis, S., Pession, A., Hrelia, P., & Tonelli, R. (2022) · Cancers · doi:10.3390/cancers14184421 · Cited by 70
Singh, T., Prasad, R., & Katiyar, S. K. (2012) · Epigenetics · doi:10.4161/epi.23078 · Cited by 67
Yang, F., Gao, Z., Xu, J., Wang, H., Guo, Q., Li, B., Li, M., Xu, H., Qi, Y., Zhao, S., et al. (2023) · Theranostics · doi:10.7150/thno.82590 · Cited by 68
Benn, C., Butler, R. K., Mariner, L., Nixon, J., Moffitt, H., Mielcarek, M., Woodman, B., & Bates, G. P. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005747 · Cited by 66
“HDAC7 has been shown to associate with transcription co-repressors and factors such as CtBP, MEF2, HP1a, SMRT, N-CoR, mSin3A, and HIF1a [16,31,39,47,49,57].”
BackgroundMetal Ion Signaling in Biomedicine
Rodriguez, R., Müller, S., Colombeau, L., Solier, S., Sindikubwabo, F., & Cañeque, T. (2025) · Chemical Reviews · doi:10.1021/acs.chemrev.4c00577 · Cited by 67
The Chromatin Landscape of Kaposi’s Sarcoma-Associated Herpesvirus
Tóth, Z., Brulois, K., & Jung, J. U. (2013) · Viruses · doi:10.3390/v5051346 · Cited by 65
“While acetylation of histones by histone acetyltransferases (HATs) unravels chromatin and activates transcription, histone deacetylases (HDACs) induce chromatin condensation and gene silencing [90,91].”
BackgroundPhotoreceptor rescue and toxicity induced by different calpain inhibitors
Paquet‐Durand, F., Sanges, D., McCall, J., Silva, J., Veen, T. V., Marigo, V., & Ekström, P. A. R. (2010) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2010.06983.x · Cited by 64
“HDAC activation strongly impacts gene transcription (Gallinari et al. 2007), and correlates with down-regulation of neuroprotective genes Journal of Neurochemistry 2010 International Society for Neurochemistry, J. Neurochem.”
Background
Metadata
- Authors
- Gallinari, P., Marco, S. D., Jones, P., Pallaoro, M., & Steinkühler, C.
- Affiliations
- Institute of Molecular Biology and Pathology (IT)
- Corresponding author
- Steinkühler, Christian
- Venue
- Cell Research
- Published
- 2007-02-27
- Volume
- 17
- Issue
- 3
- Pages
- 195-211
- ISSN
- 1001-0602 (ISSN-L)
- 1748-7838
- OpenAlex
- W2031954417
- Semantic Scholar
- 755cb3e836171a20f267d47b6677a035efcf7c22
- Cited by
- 678
- References
- 165
- Citations by year
- 2026: 47 · 2025: 87 · 2024: 38 · 2023: 37 · 2022: 52 · 2021: 58 · 2020: 30 · 2019: 29 · 2018: 28 · 2017: 20 · 2016: 29 · 2015: 22 · 2014: 27 · 2013: 38 · 2012: 20
- FWCI
- 2.44
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Cell Research (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Keywords
- histone deacetylase, histone acetyltransferase, histone acetylation, gene transcription, chromatin conformation, histone deacetylase inhibitors, cancer therapeutics, non-histone protein acetylation, post-translational modification, cell cycle regulation, cell differentiation, malignant transformation
- MeSH terms
- Acetylation, Animals, Histone Deacetylases, Histones, Humans, Models, Biological, Models, Molecular, Molecular Biology, Neoplasms, Transcription, Genetic, Histone Deacetylase Inhibitors
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