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Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4
Open accessAbstract
Autophagy is a major catabolic pathway by which eukaryotic cells degrade and recycle macromolecules and organelles. This pathway is activated under environmental stress conditions, during development and in various pathological situations. In this study, we describe the role of reactive oxygen species (ROS) as signaling molecules in starvation-induced autophagy. We show that starvation stimulates formation of ROS, specifically H(2)O(2). These oxidative conditions are essential for autophagy, as treatment with antioxidative agents abolished the formation of autophagosomes and the consequent degradation of proteins. Furthermore, we identify the cysteine protease HsAtg4 as a direct target for oxidation by H(2)O(2), and specify a cysteine residue located near the HsAtg4 catalytic site as a critical for this regulation. Expression of this regulatory mutant prevented the formation of autophagosomes in cells, thus providing a molecular mechanism for redox regulation of the autophagic process.
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“Induction of autophagy following nutrient starvation requires the production of hydrogen peroxide that oxidizes autophagy‐related (ATG)4.”
From Reactive Oxygen Species in Cancer: Current Findings and Future Directions (2021) · cites this paper as [51]
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“MTOR suppression does not always induce autophagy, such as when BECN1 undergoes inhibitory phosphorylation by the growth factor signaling molecules EGFR and AKT, when microglia are activated by lipopolysaccharide (LPS), a TLR4 ligand [766], or during Salmonella infection [767-769].”
From Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) 1 (2021) · cites this paper as [767]
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1 retracted
Mariño, G., Urı́a, J. A., Puente, X. S., Quesada, V., Bordallo, J., & López-Otı́n, C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m208247200 · Cited by 206
RetractedRepertoires of Autophagy in the Pathogenesis of Ocular Diseases
Li, Y., Jiang, Q. L., Cao, G.-F., Yao, J., & Yan, B. (2015) · Cellular Physiology and Biochemistry · doi:10.1159/000373980 · Cited by 16,351
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Kabeya, Y., Mizushima, N., Ueno, T., Yamamoto, A., Kirisako, T., Noda, T., Kominami, E., Ohsumi, Y., & Yoshimori, T. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5720 · Cited by 6,605
Cui, C., Cui, J., Jin, F., Cui, Y., Li, R., Jiang, X., Tian, Y., Wang, R. C., Jiang, P., & Gao, J. (2017) · Cellular Physiology and Biochemistry · doi:10.1159/000479571 · Cited by 5,214
Antimicrobial Autophagy: A Conserved Innate Immune Response in Drosophila
Moy, R. H., & Cherry, S. R. (2013) · Journal of Innate Immunity · doi:10.1159/000350326 · Cited by 3,551
Autophagy in Health and Disease: A Double-Edged Sword
Shintani, T., & Klionsky, D. J. (2004) · Science · doi:10.1126/science.1099993 · Cited by 2,559
A ubiquitin-like system mediates protein lipidation
Ichimura, Y., Kirisako, T., Takao, T., Satomi, Y., Shimonishi, Y., Ishihara, N., Mizushima, N., Tanida, I., Kominami, E., Ohsumi, M., et al. (2000) · Nature · doi:10.1038/35044114 · Cited by 2,139
LC3 conjugation system in mammalian autophagy
Tanida, I., Ueno, T., & Kominami, E. (2004) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2004.05.009 · Cited by 1,512
WWW-query: An on-line retrieval system for biological sequence banks
Perrière, G., & Gouy, M. (1996) · Biochimie · doi:10.1016/0300-9084(96)84768-7 · Cited by 1,488
LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation
Kabeya, Y., Mizushima, N., Yamamoto, A., Oshitani-Okamoto, S., Ohsumi, Y., & Yoshimori, T. (2004) · Journal of Cell Science · doi:10.1242/jcs.01131 · Cited by 1,394
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Wang, Y., Nartiss, Y., Steipe, B., McQuibban, G. A., & Kim, P. K. (2012) · Autophagy · doi:10.4161/auto.21211 · Cited by 438
“Both exogenously added hydrogen peroxide (H 2 O 2 ) and superoxide (O 2 ) produced in the mitochondria have been previously shown to upregulate the formation of autophagosomes.(11,12) Furthermore, a recent study demonstrated that photo-irradiation of mitochondria using 488 nm light can cause mitophagy.”
BackgroundAutophagy Is Essential for Mitochondrial Clearance in Mature T Lymphocytes
Pua, H. H., Guo, J., Komatsu, M., & He, Y.-W. (2009) · The Journal of Immunology · doi:10.4049/jimmunol.0801143 · Cited by 438
“This idea is further supported by recent evidence showing that ROS induces autophagy through Atg4 (65).”
BackgroundFree Radicals in Cross Talk Between Autophagy and Apoptosis
Kaminskyy, V. O., & Zhivotovsky, B. (2013) · Antioxidants and Redox Signaling · doi:10.1089/ars.2013.5746 · Cited by 421
Reactive Oxygen Species in Skeletal Muscle Signaling
Barbieri, E., & Sestili, P. (2011) · Journal of Signal Transduction · doi:10.1155/2012/982794 · Cited by 433
“ROS may trigger either autophagy or apoptosis: whether these two pathways will be activated depends on the cell context and on the availability of specific modulators of ROS activity [87].”
InfluentialAkt inhibition promotes autophagy and sensitizes PTEN-null tumors to lysosomotropic agents
Degtyarev, M., De Mazière, A., Orr, C., Lin, J., Lee, B. B., Tien, J. Y., Prior, W. W., van Dijk, S., Wu, H., Gray, D. C., et al. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200801099 · Cited by 366
“S4 C), suggesting a class III PI3K dependence similar to starvation-induced ROS production ( Scherz-Shouval et al., 2007 ).”
The role of NCOA4-mediated ferritinophagy in health and disease
Santana-Codina, N., & Mancias, J. D. (2018) · Pharmaceuticals · doi:10.3390/ph11040114 · Cited by 410
“Increased ferritinophagy flux correlates with reactive oxygen species (ROS) production and a type of cell death known as ferroptosis.”
BackgroundInfluentialTirichen, H., Yaigoub, H., Xu, W., Wu, C., Li, R., & Li, Y. (2021) · Frontiers in Physiology · doi:10.3389/fphys.2021.627837 · Cited by 450
“Oxidation of Atg4 by H2O2 at the critical Cys-81 residue inactivates the protease, thus facilitating autophagosome formation by Atg8 (Scherz-Shouval et al., 2007).”
BackgroundResveratrol: Its Biologic Targets and Functional Activity
Pervaiz, S., & Holme, A. L. (2009) · Antioxidants and Redox Signaling · doi:10.1089/ars.2008.2412 · Cited by 415
The Role of Surface Functionality in Determining Nanoparticle Cytotoxicity
Kim, S. T., Saha, K., Kim, C., & Rotello, V. M. (2013) · Accounts of Chemical Research · doi:10.1021/ar3000647 · Cited by 403
Henry, E. M., Fung, N., Liu, J., Drakakaki, G., & Coaker, G. (2015) · PLoS Genetics · doi:10.1371/journal.pgen.1005199 · Cited by 407
Roles of Autophagy in Oxidative Stress
Yun, H. R., Jo, Y. H., Kim, J., Shin, Y., Kim, S. S., & Choi, T. G. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21093289 · Cited by 413
“Autophagy is related to the maintenance and integrity of neuronal cells for the postmitotic nature of neurons [115,219].”
BackgroundAutophagy in Ischemic Heart Disease
Gustafsson, Å. B., & Gottlieb, R. A. (2009) · Circulation Research · doi:10.1161/circresaha.108.187427 · Cited by 404
The role of autophagy in the heart
Nishida, K., Kyoi, S., Yamaguchi, O., Sadoshima, J., & Otsu, K. (2008) · Cell Death and Differentiation · doi:10.1038/cdd.2008.163 · Cited by 394
“but are also essential for autophagy and specifically regulate Atg4 activity.(48) Increases in cytosolic-free Ca2þ concentration not only activate pro-apoptotic signals(49) but also potently induce autophagy by activating calmodulin-dependent kinase kinase.”
BackgroundSignal Transduction by Mitochondrial Oxidants
Finkel, T. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.r111.271999 · Cited by 390
“This rise in ROS levels was evident within 15 min of starvation (32).”
BackgroundLoss of the Parkinson's disease-linked gene DJ-1 perturbs mitochondrial dynamics
Irrcher, I., Aleyasin, H., Seifert, E. L., Hewitt, S. J., Chhabra, S., Phillips, M., Lutz, A. K., Rousseaux, M. W. C., Bevilacqua, L., Jahani‐Asl, A., et al. (2010) · Human Molecular Genetics · doi:10.1093/hmg/ddq288 · Cited by 394
Martinet, W., & Meyer, G. R. Y. D. (2009) · Circulation Research · doi:10.1161/circresaha.108.188318 · Cited by 390
Complex Inhibitory Effects of Nitric Oxide on Autophagy
Sarkar, S., Korolchuk, V. I., Renna, M., Imarisio, S., Fleming, A., Williams, A. J., Garcı́a-Arencibia, M., Rose, C., Luo, S., Underwood, B. R., et al. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.04.029 · Cited by 386
“Reactive oxygen species (ROS) also regulate autophagy under amino acid and serum starvation conditions, where superoxide has been suggested to be the major ROS species involved in ROS-mediated autophagy (Chen et al., 2009; Scherz-Shouval et al., 2007).”
BackgroundSatoo, K., Noda, N. N., Kumeta, H., Fujioka, Y., Mizushima, N., Ohsumi, Y., & Inagaki, F. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.80 · Cited by 384
“Recently, the activity of HsAtg4A and 4B was shown to be regulated by reactive oxygen species in vivo (Scherz-Shouval et al, 2007).”
BackgroundAutophagy in Idiopathic Pulmonary Fibrosis
Patel, A. S., Lin, L., Geyer, A. I., Haspel, J. A., An, C. H., Cao, J., Rosas, I. O., & Morse, D. (2012) · PLoS ONE · doi:10.1371/journal.pone.0041394 · Cited by 377
“Markers of oxidative stress have also been identified in the lungs of IPF patients [19], and recent studies indicate that oxidative stress or elevated reactive oxygen species activate autophagy [20,21].”
BackgroundCancer cachexia and its pathophysiology: links with sarcopenia, anorexia and asthenia
da Silva, S. P., Santos, J., Silva, M. P. C. E., da Costa, R. M. G., & Medeiros, R. (2020) · Journal of Cachexia Sarcopenia and Muscle · doi:10.1002/jcsm.12528 · Cited by 392
Höhn, A., Weber, D., Jung, T., Ott, C., Hugo, M., Kochlik, B., Kehm, R., König, J., Grune, T., & Castro, J. P. (2016) · Redox Biology · doi:10.1016/j.redox.2016.12.001 · Cited by 388
Tau degradation: the ubiquitin-proteasome system versus the autophagy-lysosome system
Lee, M. J., Lee, J. H., & Rubinsztein, D. C. (2013) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2013.03.001 · Cited by 336
Modulation of intracellular ROS levels by TIGAR controls autophagy
Bensaad, K., Cheung, E. C., & Vousden, K. H. (2009) · The EMBO Journal · doi:10.1038/emboj.2009.242 · Cited by 371
“Indeed, there is evidence that some of the survival and anti-oxidant responses to p53 are down-regulated under conditions of sustained stress when the cells shift to apoptosis (Sablina et al, 2005; Bensaad et al, 2006).”
BackgroundInfluentialAutophagy in immunity and cell‐autonomous defense against intracellular microbes
Deretic, V. P. (2011) · Immunological Reviews · doi:10.1111/j.1600-065x.2010.00995.x · Cited by 378
“During starvation, oxidation [possibly based on the known ROS released from mitochondria in starved cells (103)] of one of the three key cysteine residues, C106, promotes HMGB1 translocation to the cytoplasm from its normal nuclear localization where it plays other roles (101, 102).”
Backgroundvan der Veen, A. G., & Ploegh, H. L. (2012) · Annual Review of Biochemistry · doi:10.1146/annurev-biochem-093010-153308 · Cited by 381
The role of mitochondrial ROS in the aging brain
Stefanatos, R., & Sanz, A. (2018) · FEBS Letters · doi:10.1002/1873-3468.12902 · Cited by 358
“Different reports have shown that the efficiency of cellular quality control is regulated by redox changes in key components such as the 20S proteasome [99] or the cysteine protease ATG4 [100].”
BackgroundOxidative Stress Stimulates Autophagic Flux During Ischemia/Reperfusion
Hariharan, N., Zhai, P., & Sadoshima, J. (2010) · Antioxidants and Redox Signaling · doi:10.1089/ars.2010.3488 · Cited by 352
“During starvation, H 2 O 2 directly oxidizes HsAtg4 and inhibits its cysteine protease activity, thereby causing increased LC3 lipidation and autophagy in cancer cell lines (27).”
Mitochondrial Quality Control and Disease: Insights into Ischemia-Reperfusion Injury
Anzell, A. R., Maizy, R., Przyklenk, K., & Sanderson, T. H. (2017) · Molecular Neurobiology · doi:10.1007/s12035-017-0503-9 · Cited by 359
“ROS has also been shown to activate mitophagy via BNIP3 although, as stated previously, high levels of BNIP3 can induce apoptosis [200, 201].”
microRNA‐101 is a potent inhibitor of autophagy
Frankel, L. B., Wen, J., Lees, M., Høyer‐Hansen, M., Farkas, T., Krogh, A., Jäättelä, M., & Lund, A. H. (2011) · The EMBO Journal · doi:10.1038/emboj.2011.331 · Cited by 312
“Finally, ATG4D is a member of the ATG4 family of cysteine proteases, which regulate autophagosome biogenesis through the pro- cessing of LC3, allowing its subsequent conjugation to phos- phatidylethanolamine (PE) on autophagosomal membranes (Marino et al, 2003; Scherz-Shouval et al, 2007).”
BackgroundTargeting autophagy in obesity: from pathophysiology to management
Zhang, Y., Sowers, J. R., & Ren, J. (2018) · Nature Reviews Endocrinology · doi:10.1038/s41574-018-0009-1 · Cited by 338
Shin, D.-M., Jeon, B., Lee, H., Jin, H. S., Yuk, J., Song, C., Lee, S. H., Lee, Z.-W., Cho, S.-N., Kim, J., et al. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001230 · Cited by 345
“In starvation-induced autophagy, ROS serve as signaling molecules that induce autophagy and regulate cysteine protease HsAtg4 [50].”
BackgroundOu, X., Lee, M. R., Huang, X., Messina‐Graham, S., & Broxmeyer, H. E. (2014) · Stem Cells · doi:10.1002/stem.1641 · Cited by 338
“ROS induces autophagy by inhibition of ATG4 activity [40].”
BackgroundLudin, A., Gur‐Cohen, S., Golan, K., Kaufmann, K. B., Itkin, T., Medaglia, C., Lu, X., Ledergor, G., Kollet, Ó., & Lapidot, T. (2014) · Antioxidants and Redox Signaling · doi:10.1089/ars.2014.5941 · Cited by 349
“Nutrient starvation triggers PI3K, which promotes Atg8 lipidation, which is necessary for autophagy (84).”
Mechanisms of mitophagy: PINK1, Parkin, USP30 and beyond
Bingol, B., & Sheng, M. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.04.015 · Cited by 340
Constitutive Activation of Chaperone-mediated Autophagy in Cells with Impaired Macroautophagy
Kaushik, S., Massey, A. C., Mizushima, N., & Cuervo, A. M. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-11-1155 · Cited by 343
“Macroautophagy and CMA activity are maximally activated under stress conditions such as starvation, oxidative stress, or conditions leading to enhanced protein misfolding (Cuervo et al., 1995; Kiffin et al., 2004; Mizushima et al., 2004; Ravikumar et al., 2004; Iwata et al., 2005; Scherz-Shouval et al., 2007).”
BackgroundAutophagy and Alzheimer’s Disease
Li, Q., Liu, Y., & Sun, M. (2016) · Cellular and Molecular Neurobiology · doi:10.1007/s10571-016-0386-8 · Cited by 337
“However, recent studies have also shown autophagy could be induced by diverse stimulations, such as reactive oxygen species (ROS) (Scherz-Shouval et al. 2007), hypoxia impairments (Mazure and Pouysségur 2010), subcellular organelle damages (Song et al.”
BackgroundAutophagosome biogenesis: From membrane growth to closure
Melia, T. J., Lystad, A. H., & Simonsen, A. (2020) · The Journal of Cell Biology · doi:10.1083/jcb.202002085 · Cited by 340
Sphingolipids: regulators of crosstalk between apoptosis and autophagy
Young, M. M., KESTER, M. A., & Wang, H. (2012) · Journal of Lipid Research · doi:10.1194/jlr.r031278 · Cited by 338
“The generation of ROS during starvation is essential for autophagosome formation through the redox regulation of Atg4 ( 174 ).”
BackgroundLC3 and GATE-16 N Termini Mediate Membrane Fusion Processes Required for Autophagosome Biogenesis
Weidberg, H., Shpilka, T., Shvets, E., Abada, A., Shimron, F., & Elazar, Z. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.02.006 · Cited by 340
“The conjugation of Atg8 to PE is also regulated by the Atg4 protease, which is responsible for both priming of Atg8 by exposing a glycine residue in its C terminus, as well as mediating the cleavage of the lipidated Atg8 from the membrane, a step regulated by reactive oxygen species (ROS) (Kirisako et al., 2000; Scher…”
BackgroundSelf-citationCellular metabolic and autophagic pathways: Traffic control by redox signaling
Dodson, M. B., Darley-Usmar, V. M., & Zhang, J. (2013) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2013.05.014 · Cited by 333
Glutathione in Cancer Cell Death
Ortega, Á., Mena, S., & Estrela, J. M. (2011) · Cancers · doi:10.3390/cancers3011285 · Cited by 320
“The role of GSH in autophagy is not fully understood but replenishment of GSH level using N-acetyl-L-cysteine prevents autophagy induction and autophagosome formation and protein degradation induced by starvation [110,111].”
BackgroundMei, S., Ni, H., Manley, S., Bockus, A. B., Kassel, K. M., Luyendyk, J. P., Copple, B. L., & Ding, W. (2011) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.111.184341 · Cited by 325
“NAC has been widely used as an antioxidant and has been shown to block autophagy in many experimental models (Scherz-Shouval et al., 2007; Ding et al., 2010b).”
MethodThe emerging role of autophagy in the pathophysiology of diabetes mellitus
González, C. D., Lee, M., Marchetti, P., Pietropaolo, M., Towns, R., Vaccaro, M. I., Watada, H., & Wiley, J. W. (2010) · Autophagy · doi:10.4161/auto.7.1.13044 · Cited by 326
Crosstalk Between Autophagy and Apoptosis in Heart Disease
Nishida, K., Yamaguchi, O., & Otsu, K. (2008) · Circulation Research · doi:10.1161/circresaha.108.175448 · Cited by 320
Two ubiquitin-like conjugation systems that mediate membrane formation during autophagy
Nakatogawa, H. (2013) · Essays in Biochemistry · doi:10.1042/bse0550039 · Cited by 322
de Luca, A., Smeekens, S. P., Casagrande, A., Iannitti, R., Conway, K. L., Gresnigt, M. S., Begun, J., Plantinga, T. S., Joosten, L. A. B., van der Meer, J. W. M., et al. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1322831111 · Cited by 313
“Given the suggested role for ROS in autophagy (29, 30), a defective autophagic process responsible for hyperproduction of IL-1β is consistent with NADPH deficiency.”
BackgroundWang, C., Wu, S., Wu, Y., & Wei, Y. (2013) · Experimental Biology and Medicine · doi:10.1177/1535370213493069 · Cited by 321
“Oxidation of Atg4 by H2O2 under starvation condition led to inhibition of its deconjugation activity, which allowed the formation of autophagosome membrane while treatment of cells with antioxidants abolished the induction of autophagy.(128) It was demonstrated that CR can induce autophagy through the inhibition of th…”
BackgroundPosttranslational modification of autophagy-related proteins in macroautophagy
Xie, Y., Kang, R., Sun, X., Zhong, M., Huang, J., Klionsky, D. J., & Tang, D. (2015) · Autophagy · doi:10.4161/15548627.2014.984267 · Cited by 302
Damage of photoreceptor-derived cells in culture induced by light emitting diode-derived blue light
Kuse, Y., Ogawa, K., Tsuruma, K., Shimazawa, M., & Hara, H. (2014) · Scientific Reports · doi:10.1038/srep05223 · Cited by 309
ROS-mediated mechanisms of autophagy stimulation and their relevance in cancer therapy
Dewaele, M., Maes, H., & Agostinis, P. (2010) · Autophagy · doi:10.4161/auto.6.7.12113 · Cited by 314
The role of the autophagy in myocardial ischemia/reperfusion injury
Ma, S., Wang, Y., Chen, Y., & Cao, F. (2014) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2014.05.010 · Cited by 310
Molecular Strategies for Targeting Antioxidants to Mitochondria: Therapeutic Implications
Apostolova, N., & Víctor, V. M. (2014) · Antioxidants and Redox Signaling · doi:10.1089/ars.2014.5952 · Cited by 311
“that trigger autophagy as a cell survival mechanism (284).”
Inflammatory Bowel Disease: Mechanisms, Redox Considerations, and Therapeutic Targets
Biasi, F., Leonarduzzi, G., Oteiza, P. I., & Poli, G. (2013) · Antioxidants and Redox Signaling · doi:10.1089/ars.2012.4530 · Cited by 311
“ROS are essential for autophagosomal degradation of proteins: In particular, H 2 O 2 specifically inactivates ATG4, most likely activating PI3K signaling, thereby promoting ATG8 lipidation, and resulting in enhanced autophagy (223).”
The multiple roles of autophagy in cancer
Rosenfeldt, M. T., & Ryan, K. M. (2011) · Carcinogenesis · doi:10.1093/carcin/bgr031 · Cited by 311
ROS-modulated therapeutic approaches in cancer treatment
Raza, M. H., Siraj, S., Arshad, A., Waheed, U., Aldakheel, F. M., Alduraywish, S. A., & Arshad, M. M. U. D. (2017) · Journal of Cancer Research and Clinical Oncology · doi:10.1007/s00432-017-2464-9 · Cited by 304
Lipofuscin: formation, effects and role of macroautophagy
Höhn, A., & Grune, T. (2013) · Redox Biology · doi:10.1016/j.redox.2013.01.006 · Cited by 298
“All rights reserved.”
Full-coverage regulations of autophagy by ROS: from induction to maturation
Zhou, J., Li, X., Liu, Y. J., Ji, F., Wu, Y., Shen, H., & Lu, G. (2021) · Autophagy · doi:10.1080/15548627.2021.1984656 · Cited by 304
“effect of ATG3 and ATG7 oxidation [59] and the prophagophore expansion effect of ATG4 oxidation [55,57] (Figure 3B).”
BackgroundInfluentialA comprehensive glossary of autophagy-related molecules and processes (2ndedition)
Klionsky, D. J., Baehrecke, E. H., Brumell, J. H., Chu, C. T., Codogno, P., Cuervo, A. M., Debnath, J., Deretic, V. P., Elazar, Z., Eskelinen, E., et al. (2011) · Autophagy · doi:10.4161/auto.7.11.17661 · Cited by 298
Self-citationLi, L., Chen, Y., & Gibson, S. B. (2012) · Cellular Signalling · doi:10.1016/j.cellsig.2012.09.020 · Cited by 301
Phillips, A. R., Suttangkakul, A., & Vierstra, R. D. (2008) · Genetics · doi:10.1534/genetics.107.086199 · Cited by 294
“Recent studies with the human autophagy system showed that this protease is activated by starvation-induced oxidation, thus providing a mechanism to directly regulate ATG8 availability (Scherz-Shouval et al. 2007).”
BackgroundLinking Autophagy to Abiotic and Biotic Stress Responses
Signorelli, S., Tarkowski, Ł. P., den Ende, W. V., & Bassham, D. C. (2019) · Trends in Plant Science · doi:10.1016/j.tplants.2019.02.001 · Cited by 285
“Because too much delipidating activity would reduce ATG8–phosphatidylethanolamine conjugation, which is necessary for autophagosome formation, the authors suggested that in this way ROS could induce autophagy [116].”
BackgroundVarga, Z. V., Giricz, Z., Liaudet, L., Haskó, G., Ferdinandy, P., & Pacher, P. (2014) · Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease · doi:10.1016/j.bbadis.2014.06.030 · Cited by 292
“In addition, certain proteins involved in autophagosome formation and maturation (Atg4, LC3-II) require oxidative posttranslational modifications [35,36], thus, activity of these proteins are also strongly influenced by their redox status [35].”
BackgroundRuart, M., Chavarria, L., Campreciós, G., Suárez-Herrera, N., Montironi, C., Guixé‐Muntet, S., Bosch, J., Friedman, S. L., García‐Pagán, J. C., & Hernández–Gea, V. (2018) · Journal of Hepatology · doi:10.1016/j.jhep.2018.10.015 · Cited by 288
Watch What You (Self-) Eat: Autophagic Mechanisms that Modulate Metabolism
Lahiri, V., Hawkins, W. D., & Klionsky, D. J. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.03.003 · Cited by 287
“However, dysfunctional mitochondria generate ROS that not only damage cellular membranes and DNA but also lead to futile ATP consumption (Lemasters, 2014).”
BackgroundInfluentialAutophagy and mitophagy in cancer metabolic remodelling
Ferro, F., Servais, S., Besson, P., Roger, S., Dumas, J., & Brisson, L. (2019) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2019.05.029 · Cited by 288
“Lazova, R., R.L. Camp, V. Klump, S.F. Siddiqui, R.K. Amaravadi, and J.M. Pawelek, Punctate 608 LC3B expression is a common feature of solid tumors and associated with proliferation, 609 metastasis, and poor outcome.”
BackgroundInfluentialDynamic regulation of macroautophagy by distinctive ubiquitin-like proteins
Klionsky, D. J., & Schulman, B. A. (2014) · Nature Structural & Molecular Biology · doi:10.1038/nsmb.2787 · Cited by 284
Mitochondria and Reactive Oxygen Species: Physiology and Pathophysiology
Bolisetty, S., & Jaimes, E. A. (2013) · International Journal of Molecular Sciences · doi:10.3390/ijms14036306 · Cited by 287
“Nevertheless, research in the past decade has unraveled the autophagy process and provided compelling evidence to suggest a protective role for regulated and controlled autophagy [106,107].”
BackgroundChompoosor, A., Saha, K., Ghosh, P. S., Macarthy, D. J., Miranda, O. R., Zhu, Z., Arcaro, K. F., & Rotello, V. M. (2010) · Small · doi:10.1002/smll.201000463 · Cited by 275
Autophagy proteins control goblet cell function by potentiating reactive oxygen species production
Patel, K., Miyoshi, H., Beatty, W. L., Head, R. D., Malvin, N. P., Cadwell, K., Guan, J., Saitoh, T., Akira, S., Seglen, P. O., et al. (2013) · The EMBO Journal · doi:10.1038/emboj.2013.233 · Cited by 287
“Additionally, intracellular ROS can regulate autophagy by altering Atg4 activity (Scherz-Shouval et al , 2007).”
LC3-Associated Phagocytosis and Inflammation
Heckmann, B. L., Boada-Romero, E., Cunha, L. D., Magne, J., & Green, D. R. (2017) · Journal of Molecular Biology · doi:10.1016/j.jmb.2017.08.012 · Cited by 276
“following induction by different stimuli as reported previously [71], and interestingly, the delipidation activity of ATG4 is inhibited by ROS [72], extending the presence of LC3 proteins in the autophagosomal membrane and favoring autophagy.”
Regulation of the aging process by autophagy.
Salminen, A., & Kaarniranta, K. (2009) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2009.03.004 · Cited by 270
Oxidative stress and the role of redox signalling in chronic kidney disease
Kishi, S., Nagasu, H., Kidokoro, K., & Kashihara, N. (2023) · Nature Reviews Nephrology · doi:10.1038/s41581-023-00775-0 · Cited by 297
“The cysteine protease HsAtg4 is also a direct target of oxidation by H 2 O 2 , and the presence of HsAtg4 is essential for autophagosome formation 23,29 .”
Reactive Oxygen Species and Autophagy in Plants and Algae
Pérez‐Pérez, M. E., Lemaire, S. D., & Crespo, J. L. (2012) · PLANT PHYSIOLOGY · doi:10.1104/pp.112.199992 · Cited by 269
Autophagy During Cardiac Stress: Joys and Frustrations of Autophagy
Gottlieb, R. A., & Mentzer, R. M. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135757 · Cited by 270
“Atg4 is redox regulated and appears to be responsible for upregulating autophagy in the face of oxidative stress (2).”
BackgroundDing, Y., Kim, S. L., Lee, S.-Y., Koo, J. K., Wang, Z., & Choi, M. E. (2014) · Journal of the American Society of Nephrology · doi:10.1681/asn.2013101068 · Cited by 264
Yuan, H., Perry, C. N., Huang, C., Iwai‐Kanai, E., Carreira, R., Glembotski, C. C., & Gottlieb, R. A. (2008) · American Journal of Physiology-Heart and Circulatory Physiology · doi:10.1152/ajpheart.01051.2008 · Cited by 265
How to Live Long and Prosper: Autophagy, Mitochondria, and Aging
Yen, W.-L., & Klionsky, D. J. (2008) · Physiology · doi:10.1152/physiol.00013.2008 · Cited by 271
“Oxidation of this protein leads to inhibition of its deconjugation activity (168), which allows the accumulation of phosphatidylethanolamine-conjugated Atg8 on the autophagosome membrane, an important step in autophagosome formation (204).”
BackgroundInfluentialDehdashtian, E., Mehrzadi, S., Yousefi, B., Hosseinzadeh, A., Reiter, R. J., Safa, M., Ghaznavi, H., & Naseripour, M. (2017) · Life Sciences · doi:10.1016/j.lfs.2017.12.001 · Cited by 267
“5) through mTOR inhibition, increase in Beclin1 expression, and LC3-I to LC3-II conversion (94-97).”
BackgroundHallmarks of Aging: An Autophagic Perspective
Barbosa, M. C., Grosso, R. A., & Fader, C. M. (2019) · Frontiers in Endocrinology · doi:10.3389/fendo.2018.00790 · Cited by 275
“Mitochondrial ROS can activate the autophagic pathway upon starvation by the activation of ATG4 (41), and this in turn leads to autophagic degradation of mitochondria (mitophagy) in order to reduce the ROS levels by limiting the number of mitochondria per cell (42).”
BackgroundWong, C. H., Iskandar, K. B., Yadav, S. K., Hirpara, J. L., Loh, T. K. S., & Pervaiz, S. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009996 · Cited by 263
“Indeed, H2O2 was also found to be an important mediator in starvation-induced autophagy, through its activity in regulating Atg4 protease[20].”
Cardioprotection by resveratrol: a novel mechanism via autophagy involving the mTORC2 pathway
Gurusamy, N., Lekli, I., Mukherjee, S., Ray, D., Ahsan, M. K., Gherghiceanu, M., Popescu, L. M., & Das, D. K. (2009) · Cardiovascular Research · doi:10.1093/cvr/cvp384 · Cited by 267
“Recently, autophagy has been found to be regulated by redox signalling.(11,12) As resveratrol, a polyphenolic phytoalexin found in grapes, wines, peanuts, and several other fruits and vegetables, has been found to precondition the ischaemic myocardium by redox signalling,(13) we used this compound to explore the mecha…”
BackgroundThe Atg8 family: multifunctional ubiquitin-like key regulators of autophagy
Rawet-Slobodkin, M., & Elazar, Z. (2013) · Essays in Biochemistry · doi:10.1042/bse0550051 · Cited by 259
Self-citationMitochondrial ROS Formation in the Pathogenesis of Diabetic Cardiomyopathy
Kaludercic, N., & Lisa, F. D. (2020) · Frontiers in Cardiovascular Medicine · doi:10.3389/fcvm.2020.00012 · Cited by 268
“Mitochondrial ROS are implicated in the activation of the canonical autophagy (178), but on the other hand excessive mitochondrial ROS formation impairs lysosomal biogenesis, function and the autophagy process in the cardiac myocytes (156, 168).”
BackgroundRecent Advances in Understanding the Pathogenesis of Rheumatoid Arthritis: New Treatment Strategies
Mueller, A., Payandeh, Z., Mohammadkhani, N., Mubarak, S. M. H., Zakeri, A., Bahrami, A. A., Brockmueller, A., & Shakibaei, M. (2021) · Cells · doi:10.3390/cells10113017 · Cited by 283
“Since ROS have been demonstrated to be involved in the formation of autophagosomes, ROS-mediated induction of autophagy might be pivotal in the resistance of synovial and peripheral RA T-cells against apoptosis and the production of citrullinated peptides in APCs [153].”
BackgroundBetin, V. M. S., & Lane, J. D. (2009) · Journal of Cell Science · doi:10.1242/jcs.046250 · Cited by 261
“The C54 endopeptidase, Atg4, is a crucial regulatory component of the autophagosome biogenesis pathway (Scherz-Shouval et al., 2007): it cleaves the C-terminus of newly synthesised Atg8 to reveal a glycine residue (priming) required for covalent attachment to PE (lipidation), and later removes PE from outer-membrane-b…”
InfluentialZhang, J., Kim, J., Alexander, A., Cai, S., Tripathi, D. N., Dere, R., Tee, A. R., Tait-Mulder, J., Di Nardo, A., Han, J. M., et al. (2013) · Nature Cell Biology · doi:10.1038/ncb2822 · Cited by 258
“As a major site of ROS generation, we hypothesized TSC at the peroxisome might induce autophagy, which is regulated by both mTORC1 6–8, 11 and ROS 27, 28 .”
Ferraro, E., Giammarioli, A. M., Chiandotto, S., Spoletini, I., & Rosano, G. M. C. (2014) · Antioxidants and Redox Signaling · doi:10.1089/ars.2013.5773 · Cited by 275
“The mechanism through which ROS induce autophagy has not been fully elucidated, but it is believed that ROS could increase Beclin1 expression and/or regulate the activity of Atg4 (27, 28, 165).”
BackgroundInfluentialHuman IRGM regulates autophagy and cell-autonomous immunity functions through mitochondria
Singh, S., Ornatowski, W., Vergne, I., Naylor, J., Delgado, M. A., Roberts, E. A., Ponpuak, M., Master, S. S., Pilli, M., White, E., et al. (2010) · Nature Cell Biology · doi:10.1038/ncb2119 · Cited by 268
“, whereas ROS generated by mitochondria induce autophagy through Atg4 (ref”
BackgroundKeap1 facilitates p62-mediated ubiquitin aggregate clearance via autophagy
Fan, W., Tang, Z., Chen, D., Moughon, D., Ding, X., Chen, S., Zhu, M., & Zhong, Q. (2010) · Autophagy · doi:10.4161/auto.6.5.12189 · Cited by 251
“It has been suggested that oxidative stress might oxidize Atg4 at Cysteine residues to regulate LC3 processing.(36) Here, we provide strong the size of these puncta did not undergo any dramatic change upon CQ treatment (Fig.”
BackgroundMitochondrial morphology in mitophagy and macroautophagy
Gomes, L. C., & Scorrano, L. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2012.02.012 · Cited by 259
“hagy [128].”
ROS-induced DNA damage and PARP-1 are required for optimal induction of starvation-induced autophagy
Rodríguez-Vargas, J. M., Ruiz-Magaña, M. J., Ruiz‐Ruiz, C., Majuelos‐Melguizo, J., Peralta-Leal, A., Rodríguez, M. I., Muñoz‐Gámez, J. A., de Almodóvar, M. R., Siles, E., López‐Rivas, A., et al. (2012) · Cell Research · doi:10.1038/cr.2012.70 · Cited by 256
Mitochondrial dysfunction and mitophagy: the beginning and end to diabetic nephropathy?
Higgins, G. C., & Coughlan, M. T. (2013) · British Journal of Pharmacology · doi:10.1111/bph.12503 · Cited by 257
“It can be further postulated that this excess ROS may stimulate mitophagy activity in the kidney and regulate the turnover of damaged mitochondria (Chen et al., 2007; Scherz-Shouval et al., 2007; Bensaad et al., 2009).”
BackgroundYao, H., & Rahman, I. (2011) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2009.10.022 · Cited by 254
“It has been shown that accumulation of ROS led to autophagy to overcome oxidative stress (Scherz-Shouval et al., 2007a; Scherz-Shouval et al., 2007b).”
BackgroundGlutathione Efflux and Cell Death
Franco, R., & Cidlowski, J. A. (2012) · Antioxidants and Redox Signaling · doi:10.1089/ars.2012.4553 · Cited by 254
Oxidative Stress and Autophagy in Cardiac Disease, Neurological Disorders, Aging and Cancer
Essick, E. E., & Sam, F. (2010) · Oxidative Medicine and Cellular Longevity · doi:10.4161/oxim.3.3.12106 · Cited by 251
Autophagy in age-related macular degeneration
Kaarniranta, K., Błasiak, J., Liton, P. B., Boulton, M. E., Klionsky, D. J., & Sinha, D. (2022) · Autophagy · doi:10.1080/15548627.2022.2069437 · Cited by 250
“Reactive oxygen species (ROS) have been described to be involved in nutrient-starvation-induced autophagy as signaling molecules [17].”
BackgroundLi, M., Hou, Y., Wang, J., Chen, X., Shao, Z.-M., & Yin, X. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.199059 · Cited by 250
miR-376b controls starvation and mTOR inhibition-related autophagy by targeting ATG4C and BECN1
Korkmaz, G., le Sage, C., Tekirdağ, K. A., Agami, R., & Gözüaçık, D. (2012) · Autophagy · doi:10.4161/auto.8.2.18351 · Cited by 252
“The other target, ATG4C, has been shown to function in autophagic membrane elongation through its effects on the maturation of LC3 proteins.(18,19,22,23) ATG4B rather than ATG4C was responsible for LC3 protein delipidation, an event important for autophagosome/late endosome-lysosome fusion and LC3 protein recycling.”
BackgroundThe glutamine-alpha-ketoglutarate (AKG) metabolism and its nutritional implications
Xiao, D., Zeng, L., Kang, Y., Kong, X., Wu, G., & Yin, Y. (2016) · Amino Acids · doi:10.1007/s00726-016-2254-8 · Cited by 246
“ROS is mainly derived from the mitochondrial respiratory chain and initiates autophagy in a manner that is sensitive to amino acids (Scherz-Shouval et al. 2007; Murphy 2009).”
BackgroundThe many roles of NOX2 NADPH oxidase-derived ROS in immunity
Lam, G. Y., Huang, J., & Brumell, J. H. (2010) · Seminars in Immunopathology · doi:10.1007/s00281-010-0221-0 · Cited by 251
“Furthermore, in MEFs with and without Atg5, an essential autophagy component, no difference in the ROS levels was observed [151].”
Background
Metadata
- Authors
- Scherz‐Shouval, R., Shvets, E., Fass, E., Shorer, H., Gil, L., & Elazar, Z.
- Affiliations
- Weizmann Institute of Science (IL)
- Corresponding author
- Elazar, Zvulun
- Venue
- The EMBO Journal
- Published
- 2007-03-08
- Volume
- 26
- Issue
- 7
- Pages
- 1749-1760
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC6517991
- OpenAlex
- W2114806766
- Cited by
- 2,101
- References
- 51
- Citations by year
- 2026: 38 · 2025: 60 · 2024: 77 · 2023: 86 · 2022: 115 · 2021: 141 · 2020: 137 · 2019: 108 · 2018: 122 · 2017: 136 · 2016: 118 · 2015: 132 · 2014: 170 · 2013: 140 · 2012: 146
- FWCI
- 59.86
- Type
- journal article
- Language
- en
- Update notices
- Open access
- bronze
- doi.org
- Licence
- Locations
- The EMBO Journal (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Israel Science Foundation
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Keywords
- reactive oxygen species, autophagy, ATG4, hydrogen peroxide, starvation, redox regulation, cysteine protease, autophagosome formation, oxidative stress signaling, protein degradation
- MeSH terms
- Autophagy-Related Proteins, Amino Acid Sequence, Animals, Autophagy, Cricetulus, Cysteine, Cysteine Endopeptidases, Enzyme Activation, Food Deprivation, Cricetinae, HeLa Cells, Humans, Models, Biological, Molecular Sequence Data, Mutation, Oxidation-Reduction, Phylogeny, CHO Cells, Reactive Oxygen Species, Phosphatidylinositol 3-Kinases, Mice
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