Notch3 and the Notch3‐upregulated RNA‐binding protein HuD regulate Ikaros alternative splicing
Open accessAbstract
Constitutive activation of the transmembrane receptor, Notch3, and loss of function of the hematopoietic transcription repressor, Ikaros (IK), play direct roles in T-cell differentiation and leukemogenesis that are dependent on pre-T-cell receptor (pre-TCR) signaling. We demonstrate the occurrence of crosstalk between Notch3 and IK that results in transcriptional regulation of the gene encoding the pTalpha chain of the pre-TCR. We also show that, in the presence of the pre-TCR, constitutive activation of Notch3 in thymocytes causes increased expression of dominantnegative non-DNA-binding IK isoforms, which are able to restrain the IK inhibition of Notch3's transcriptional activation of pTalpha. This effect appears to be mediated by Notch3's pre-TCR-dependent upregulation of the RNA-binding protein, HuD. Notch3 signaling thus appears to play a critical role in the diminished IK activity described in several lymphoid leukemias. By exerting transcription-activating and transcription-repressing effects on the pTalpha promoter, Notch3 and IK cooperate in the fine-tuning of pre-TCR expression and function, which has important implications for the regulation of thymocyte differentiation and proliferation.
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HuD mediates alternative splicing of the Ikaros gene, possibly by suppressing exon 4 inclusion.
“Furthermore, overexpression and down-regulation of HuD in T-cell lines demonstrated that it mediates alternative splicing of the Ikaros gene, possibly by suppressing exon 4 inclusion (Bellavia et al. 2007; Hinman and Lou 2008).”
From Emerging complexity of the HuD/ELAVl4 gene; implications for neuronal development, function, and dysfunction (2013) · cites this paper as Bellavia et al. 2007
The section on HuD-dependent IK variants and Figure 6 report that HuD overexpression in T-cell lines increased short Ikaros dominant-negative isoforms, while HuD knockdown prevented Notch3-induced changes in those isoforms. The paper also identifies an exon-4-lacking Ikaros isoform, but does not establish that HuD specifically suppresses exon 4 inclusion; it leaves open effects on splicing and/or RNA stability. (LLM, conf=0.84)
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Cites
A role for the ELAV RNA-binding proteins in neural stem cells: stabilization of<i>Msi1</i>mRNA
Ratti, A., Fallini, C., Cova, L., Fantozzi, R., Calzarossa, C., Zennaro, E., Pascale, A., Quattrone, A., & Silani, V. (2006) · Journal of Cell Science · doi:10.1242/jcs.02852 · Cited by 86 · cited 2× · see citing works
“…alternative The EMBO Journal VOL 26 | NO 6 | 2007 &2007 European Molecular Biology Organization1676 splicing and translation to modulation of mRNA transport and stability (Levine et al, 1993; Mobarak et al, 2000; Lisbin et al, 2001; Deschenes-Furry et al, 2003; Ratti et al, 2006; Zhu et al, 2006).”
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Diverse molecular functions of Hu proteins
Hinman, M. N., & Lou, H. (2008) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-008-8252-6 · Cited by 587 · see citing works
Bronicki, L. M., & Jasmin, B. J. (2013) · RNA · doi:10.1261/rna.039164.113 · Cited by 126 · see citing works
Promotion of exon 6 inclusion in HuD pre-mRNA by Hu protein family members
Wang, H., Molfenter, J., Zhu, H., & Lou, H. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq028 · Cited by 49 · see citing works
RNA–Binding Protein HuD as a Versatile Factor in Neuronal and Non–Neuronal Systems
Jung, M., & Lee, E. K. (2021) · Biology · doi:10.3390/biology10050361 · Cited by 39 · see citing works
- Authors
- Bellavia, D., Mecarozzi, M., Campese, A. F., Grazioli, P., Talora, C., Frati, L., Gulino, A., & Screpanti, I.
- Affiliations
- Sapienza University of Rome (IT)
- Istituto Neurologico Mediterraneo (IT)
- Istituto Pasteur (IT)
- Corresponding author
- Screpanti, Isabella
- Venue
- The EMBO Journal
- Published
- 2007-03-01
- Volume
- 26
- Issue
- 6
- Pages
- 1670-1680
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC1829386
- OpenAlex
- W2091129822
- Cited by
- 80
- References
- 1
- Citations by year
- 2026: 1 · 2024: 3 · 2023: 3 · 2021: 4 · 2020: 3 · 2019: 2 · 2018: 5 · 2017: 5 · 2016: 2 · 2014: 8 · 2013: 7 · 2012: 6
- FWCI
- 2.92
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Licence
- Locations
- The EMBO Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- IRIS Research product catalog (Sapienza University of Rome) (submittedVersion)
- Funders
- Ministero della Salute
- Ministero dell’Istruzione, dell’Università e della Ricerca
- Associazione Italiana per la Ricerca sul Cancro
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Keywords
- Notch3, Ikaros, HUD, alternative splicing, pre-T cell receptor, thymocyte differentiation, T cell differentiation, lymphoid leukemia, transcriptional regulation, RNA-binding proteins, Notch3 signaling
- MeSH terms
- ELAV-Like Protein 4, Receptor, Notch3, Animals, Cell Differentiation, Flow Cytometry, Gene Expression Regulation, Luciferases, Membrane Glycoproteins, T-Lymphocytes, Blotting, Western, Signal Transduction, Receptors, Antigen, T-Cell, alpha-beta, Alternative Splicing, DNA Primers, Reverse Transcriptase Polymerase Chain Reaction, Electrophoretic Mobility Shift Assay, RNA Interference, Chromatin Immunoprecipitation, Cell Proliferation, Mice, Ikaros Transcription Factor, Receptors, Notch, ELAV Proteins
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