The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
The woodchuck hepatitis virus post-transcriptional regulatory element reduces readthrough transcription from retroviral vectors
Abstract
The woodchuck hepatitis virus post-transcriptional regulatory element (WPRE) increases transgene expression from a variety of viral vectors, although the precise mechanism is not known. WPRE is most effective when placed downstream of the transgene, proximal to the polyadenylation signal. We hypothesized that WPRE likely reduces viral mRNA readthrough transcription by improving transcript termination, which in turn would increase viral titers and expression. Using a Cre-lox-mediated plasmid-based assay, we found significant readthrough transcription from gamma-retroviral vector (RV) long terminal repeat (wt RV-LTR) and RV LTR with a self-inactivating deletion (SIN RV-LTR). WPRE, when placed upstream of the RV LTRs, significantly reduced readthrough transcription. Readthrough, present at much lower levels with the SIN HIV-1 LV-LTR, was also reduced with WPRE. When placed in RV vectors, WPRE increased total RV genomic mRNA; and increased viral titers from transiently transfected 293T cells and stable PG13 producer cells by 7- to 15-fold. The mechanism of increased titers and expression was not due to increased nuclear mRNA export, increased rate of viral transcription or a significant increase in viral mRNA half-life. Our results showed that WPRE improved vector genomic transcript termination to increase titers and expression from RVs.
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“The woodchuck hepatitis post-transcriptional regulatory element (WPRE) is often included in AAV cassettes to improve viral titer and transduction efficiency via stabilizing mRNA and regulating transcriptional termination [26, 27].”
From Designing and optimizing AAV-mediated gene therapy for neurodegenerative diseases: from bench to bedside (2024) · cites this paper as [27]
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Cites
In Vivo Gene Delivery and Stable Transduction of Nondividing Cells by a Lentiviral Vector
Naldini, L., Blömer, U., Gallay, P., Ory, D., Mulligan, R., Gage, F. H., Verma, I. M., & Trono, D. (1996) · Science · doi:10.1126/science.272.5259.263 · Cited by 4,903
Zufferey, R., Donello, J. E., Trono, D., & Hope, T. J. (1999) · Journal of Virology · doi:10.1128/jvi.73.4.2886-2892.1999 · Cited by 1,030
A transient three-plasmid expression system for the production of high titer retroviral vectors
Soneoka, Y., Cannon, P. M., Ramsdale, E. E., Griffiths, J. C., Romano, G., Kingsman, S. M., & Kingsman, A. J. (1995) · Nucleic Acids Research · doi:10.1093/nar/23.4.628 · Cited by 686
Woodchuck hepatitis virus contains a tripartite posttranscriptional regulatory element
Donello, J. E., Loeb, J. E., & Hope, T. J. (1998) · Journal of Virology · doi:10.1128/jvi.72.6.5085-5092.1998 · Cited by 350
Loeb, J. E., Cordier, W. S., Harris, M. E., Weitzman, M. D., & Hope, T. J. (1999) · Human Gene Therapy · doi:10.1089/10430349950016942 · Cited by 279
Inefficient processing impairs release of RNA from the site of transcription
Custódio, N., Carmo‐Fonseca, M., Geraghty, F., Periera, H. S., Grosveld, F. G., & Antoniou, M. N. (1999) · The EMBO Journal · doi:10.1093/emboj/18.10.2855 · Cited by 220
Schambach, A., Wodrich, H., Hildinger, M., Bohne, J., Kräusslich, H.-G., & Baum, C. (2000) · Molecular Therapy · doi:10.1006/mthe.2000.0191 · Cited by 194
Krall, W. J., Challita, P. M., Perlmutter, L., Skelton, D. C., & Kohn, D. B. (1994) · Blood · doi:10.1182/blood.v83.9.2737.2737 · Cited by 163
Self-citationHuang, Z., & Yen, T. S. B. (1995) · Molecular and Cellular Biology · doi:10.1128/mcb.15.7.3864 · Cited by 154
Schambach, A., Bohne, J., Baum, C., Hermann, F. G., Egerer, L., von Laer, D., & Giroglou, T. (2005) · Gene Therapy · doi:10.1038/sj.gt.3302698 · Cited by 145
Robbins, P. B., Skelton, D. C., Yu, X., Halene, S., Leonard, E. H., & Kohn, D. B. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.17.10182 · Cited by 139
Self-citationRNA 3′ Readthrough of Oncoretrovirus and Lentivirus: Implications for Vector Safety and Efficacy
Zaiss, A. K., Son, S., & Chang, L. (2002) · Journal of Virology · doi:10.1128/jvi.76.14.7209-7219.2002 · Cited by 135
Self-citationIsolation of a recombinant murine leukemia virus utilizing a new primer tRNA
Colicelli, J., & Goff, S. P. (1986) · Journal of Virology · doi:10.1128/jvi.57.1.37-45.1986 · Cited by 125
Moreau‐Gaudry, F., Xia, P., Jiang, G., Perelman, N., Bauer, G., Ellis, J., Surinya, K. H., Mavilio, F., Shen, C.-K. J., & Malik, P. (2001) · Blood · doi:10.1182/blood.v98.9.2664 · Cited by 115
Self-citationIntronless mRNA transport elements may affect multiple steps of pre‐mRNA processing
Huang, Y., Wimler, K. M., & Carmichael, G. (1999) · The EMBO Journal · doi:10.1093/emboj/18.6.1642 · Cited by 112
Mogen, B. D., MacDonald, M. H., Graybosch, R. A., & Hunt, A. G. (1990) · The Plant Cell · doi:10.1105/tpc.2.12.1261 · Cited by 95
The hepatitis B virus posttranscriptional regulatory element is composed of two subelements
Donello, J. E., Beeche, A. A., Smith, G. J., Lucero, G. R., & Hope, T. J. (1996) · Journal of Virology · doi:10.1128/jvi.70.7.4345-4351.1996 · Cited by 91
Schek, N., Cooke, C., & Alwine, J. C. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.12.5386 · Cited by 85
Malik, P., McQuiston, S. A., Yu, X., Pepper, K. A., Krall, W. J., Podsakoff, G. M., Kurtzman, G. J., & Kohn, D. B. (1997) · Journal of Virology · doi:10.1128/jvi.71.3.1776-1783.1997 · Cited by 83
Self-citationCRM1-Dependent Function of a cis-Acting RNA Export Element
Popa, I., Harris, M. E., Donello, J. E., & Hope, T. J. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.7.2057-2067.2002 · Cited by 82
WPRE-mediated enhancement of gene expression is promoter and cell line specific
Klein, R., Ruttkowski, B., Knapp, E., Salmons, B., Günzburg, W. H., & Hohenadl, C. (2006) · Gene · doi:10.1016/j.gene.2005.12.018 · Cited by 81
Zang, W.-Q., Fieno, A. M., Grant, R. A., & Yen, T. S. B. (1998) · Virology · doi:10.1006/viro.1998.9255 · Cited by 76
Valsamakis, A., Schek, N., & Alwine, J. C. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.9.3699 · Cited by 70
Russnak, R. (1991) · Nucleic Acids Research · doi:10.1093/nar/19.23.6449 · Cited by 57
Mastroyiannopoulos, N. P., Feldman, M. L., Uney, J. B., Mahadevan, M. S., & Phylactou, L. A. (2005) · EMBO Reports · doi:10.1038/sj.embor.7400390 · Cited by 49
Xu, Z., Mizuguchi, H., Mayumi, T., & Hayakawa, T. (2003) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/s0304-4165(03)00078-3 · Cited by 43
Cherrington, J. M., Russnak, R., & Ganem, D. (1992) · Journal of Virology · doi:10.1128/jvi.66.12.7589-7596.1992 · Cited by 39
Cellular Proteins That Bind to the Hepatitis B Virus Posttranscriptional Regulatory Element
Huang, Z., Zang, W.-Q., & Yen, T. S. B. (1996) · Virology · doi:10.1006/viro.1996.0152 · Cited by 38
Hlavatý, J., Schittmayer, M., Stracke, A., Jandl, G., Knapp, E., Felber, B. K., Salmons, B., Günzburg, W. H., & Renner, M. (2005) · Virology · doi:10.1016/j.virol.2005.06.037 · Cited by 33
Graveley, B. R., & Gilmartin, G. M. (1996) · Journal of Virology · doi:10.1128/jvi.70.3.1612-1617.1996 · Cited by 32
A human U2 RNA mutant stalled in 3' end processing is impaired in nuclear import
Huang, Q. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.4.1025 · Cited by 30
Malik, P., Krall, W. J., Yu, X., Zhou, C., & Kohn, D. B. (1995) · Blood · doi:10.1182/blood.v86.8.2993.2993 · Cited by 27
Self-citationAmino Acids Responsible for Decreased 2, 3-Biphosphosphoglycerate Binding to Fetal Hemoglobin
Adachi, K., Konitzer, P., Pang, J., Reddy, K. S., & Surrey, S. (1997) · Blood · doi:10.1182/blood.v90.8.2916 · Cited by 24
Increased in vitro and in vivo transgene expression levels mediated through cis‐acting elements
Johansen, J. L., Tornøe, J., Møller, A., & Johansen, T. E. (2003) · The Journal of Gene Medicine · doi:10.1002/jgm.444 · Cited by 22
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Lentiviral Vectors to Probe and Manipulate the Wnt Signaling Pathway
Fuerer, C., & Nusse, R. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009370 · Cited by 283
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Schambach, A., Zychlinski, D., Ehrnstroem, B., & Baum, C. (2013) · Human Gene Therapy · doi:10.1089/hum.2012.229 · Cited by 173
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Pauwels, K., Gijsbers, R., Toelen, J., Schambach, A., Willard-Gallo, K., Verheust, C., Debyser, Z., & Herman, P. (2009) · Current Gene Therapy · doi:10.2174/156652309790031120 · Cited by 106
Metadata
- Authors
- Higashimoto, T., Urbinati, F., Perumbeti, A., Jiang, G., Zarzuela, A., Chang, L.-J., Kohn, D. B., & Malik, P.
- Affiliations
- University of Southern California (US)
- University of Florida (US)
- Corresponding author
- Malik, P
- Venue
- Gene Therapy
- Published
- 2007-06-28
- Volume
- 14
- Issue
- 17
- Pages
- 1298-1304
- ISSN
- 0969-7128 (ISSN-L)
- 1476-5462
- OpenAlex
- W1975554944
- Cited by
- 101
- References
- 34
- Citations by year
- 2026: 13 · 2025: 9 · 2024: 10 · 2023: 2 · 2022: 10 · 2021: 4 · 2020: 3 · 2019: 3 · 2018: 1 · 2017: 6 · 2016: 3 · 2015: 2 · 2014: 6 · 2013: 3 · 2012: 5
- FWCI
- 2.86
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Gene Therapy (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (5u54hl070595-05)
- National Heart, Lung, and Blood Institute (P01HL073104, U54-HL070595, R01-HL70135-01, R01HL070135)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Viral Infectious Diseases and Gene Expression in Insects
- Keywords
- read-through transcription, retroviral vectors, long terminal repeat, HIV-1 long terminal repeat, viral titer, transgene expression, polyadenylation signal
- MeSH terms
- Animals, Cell Line, Genetic Engineering, Genetic Vectors, Humans, Leukemia Virus, Murine, Retroviridae, RNA Processing, Post-Transcriptional, Transcription, Genetic, Transfection, Simian Immunodeficiency Virus, Gene Expression, Gene Expression Regulation, Viral, Reading Frames, Hepatitis B Virus, Woodchuck, Transgenes, Terminal Repeat Sequences, Regulatory Elements, Transcriptional
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